R-universe search: website

workflowr

workflowr:A Framework for Reproducible and Collaborative Data Science

Provides a workflow for your analysis projects by combining literate programming ('knitr' and 'rmarkdown') and version control ('Git', via 'git2r') to generate a website containing time-stamped, versioned, and documented results.

Maintained by John Blischak. Last updated 4 months ago.

git project-management rmarkdown website workflow

36.9 match 845 stars 11.83 score 566 scripts

rstudio

blogdown:Create Blogs and Websites with R Markdown

Write blog posts and web pages in R Markdown. This package supports the static site generator 'Hugo' (<https://gohugo.io>) best, and it also supports 'Jekyll' (<https://jekyllrb.com>) and 'Hexo' (<https://hexo.io>).

Maintained by Yihui Xie. Last updated 18 hours ago.

blog-engine blogdown hugo rmarkdown rstudio website-generation

16.3 match 1.8k stars 11.55 score 1.4k scripts 1 dependents

feddelegrand7

ralger:Easy Web Scraping

The goal of 'ralger' is to facilitate web scraping in R.

Maintained by Mohamed El Fodil Ihaddaden. Last updated 8 months ago.

dataextraction webcrawling webscraper-website webscraping

17.3 match 155 stars 7.41 score 33 scripts

rstudio

rmarkdown:Dynamic Documents for R

Convert R Markdown documents into a variety of formats.

Maintained by Yihui Xie. Last updated 4 months ago.

literate-programming markdown pandoc rmarkdown

5.5 match 2.9k stars 21.79 score 14k scripts 3.7k dependents

andreaczhang

qtwAcademic:'Quarto' Website Templates for Academics

Provides three 'Quarto' website templates as an R project, which are commonly used by academics. Templates for personal websites and course/workshop websites are included, as well as a template with minimal content for customization.

Maintained by Chi Zhang. Last updated 2 years ago.

12.3 match 39 stars 5.77 score 1 scripts

psyteachr

webexercises:Create Interactive Web Exercises in 'R Markdown' (Formerly 'webex')

Functions for easily creating interactive web pages using 'R Markdown' that students can use in self-guided learning.

Maintained by Lisa DeBruine. Last updated 2 years ago.

interactive teaching website

10.0 match 32 stars 6.86 score 458 scripts

oxfordihtm

pactr:An Interface to the Pandemic PACT Database

The Pandemic PACT <https://www.pandemicpact.org/> monitors and analyses global funding and research evidence related to diseases with pandemic potential, as well as broader research preparedness efforts, and is equipped to pivot in response to outbreaks. It collects, curates, codes, and analyses data in alignment with WHO priority diseases and other selected illnesses, including pandemic influenza, mpox, and plague. Pandemic PACT aims to guide policy and decision-making for research funders, policymakers, researchers, multilateral agencies. The database is publicly available for download from its website and from Figshare. This package interfaces with the project's Figshare repository to provide programmatic access to the database along with other data products provided by the project.

Maintained by Ernest Guevarra. Last updated 5 months ago.

15.3 match 1 stars 4.07 score 13 scripts

wjawaid

enrichR:Provides an R Interface to 'Enrichr'

Provides an R interface to all 'Enrichr' databases. 'Enrichr' is a web-based tool for analysing gene sets and returns any enrichment of common annotated biological features. Quoting from their website 'Enrichment analysis is a computational method for inferring knowledge about an input gene set by comparing it to annotated gene sets representing prior biological knowledge.' See <https://maayanlab.cloud/Enrichr/> for further details.

Maintained by Wajid Jawaid. Last updated 1 months ago.

5.8 match 90 stars 9.96 score 7 dependents

rstudio

distill:'R Markdown' Format for Scientific and Technical Writing

Scientific and technical article format for the web. 'Distill' articles feature attractive, reader-friendly typography, flexible layout options for visualizations, and full support for footnotes and citations.

Maintained by Christophe Dervieux. Last updated 1 years ago.

5.8 match 422 stars 9.90 score 402 scripts 6 dependents

bioc

memes:motif matching, comparison, and de novo discovery using the MEME Suite

A seamless interface to the MEME Suite family of tools for motif analysis. 'memes' provides data aware utilities for using GRanges objects as entrypoints to motif analysis, data structures for examining & editing motif lists, and novel data visualizations. 'memes' functions and data structures are amenable to both base R and tidyverse workflows.

Maintained by Spencer Nystrom. Last updated 5 months ago.

dataimport functionalgenomics generegulation motifannotation motifdiscovery sequencematching software

6.0 match 49 stars 8.68 score 117 scripts 1 dependents

thinkr-open

fusen:Build a Package from Rmarkdown Files

Use Rmarkdown First method to build your package. Start your package with documentation, functions, examples and tests in the same unique file. Everything can be set from the Rmarkdown template file provided in your project, then inflated as a package. Inflating the template copies the relevant chunks and sections in the appropriate files required for package development.

Maintained by Vincent Guyader. Last updated 2 months ago.

hacktoberfest rmd-first

5.1 match 163 stars 9.45 score 35 scripts

giocomai

castarter:Content Analysis Starter Toolkit

Consistent approaches for basic web scraping, text mining and word frequency analysis of textual datasets

Maintained by Giorgio Comai. Last updated 1 days ago.

tada text-mining

10.4 match 3 stars 4.52 score 2 scripts

rstudio

chromote:Headless Chrome Web Browser Interface

An implementation of the 'Chrome DevTools Protocol', for controlling a headless Chrome web browser.

Maintained by Winston Chang. Last updated 3 days ago.

3.3 match 164 stars 13.82 score 162 scripts 28 dependents

jhudsl

ottrpal:Companion Tools for Open-Source Tools for Training Resources (OTTR)

Tools for converting Open-Source Tools for Training Resources (OTTR) courses into Leanpub or Coursera courses. 'ottrpal' is for use with the OTTR Template repository to create courses.

Maintained by Candace Savonen. Last updated 13 days ago.

edtech-software

7.0 match 3 stars 6.50 score 10 scripts 1 dependents

r-lib

pkgdown:Make Static HTML Documentation for a Package

Generate an attractive and useful website from a source package. 'pkgdown' converts your documentation, vignettes, 'README', and more to 'HTML' making it easy to share information about your package online.

Maintained by Hadley Wickham. Last updated 8 hours ago.

documentation-tool

2.4 match 734 stars 18.47 score 588 scripts 162 dependents

fishr-core-team

FSAdata:Data to Support Fish Stock Assessment ('FSA') Package

The datasets to support the Fish Stock Assessment ('FSA') package.

Maintained by Derek Ogle. Last updated 2 years ago.

fish fisheries fisheries-stock-assessment fishr-website stock-assessment

7.5 match 13 stars 5.75 score 285 scripts

etiennebacher

altdoc:Package Documentation Websites with 'Quarto', 'Docsify', 'Docute', or 'MkDocs'

This is a simple and powerful package to create, render, preview, and deploy documentation websites for 'R' packages. It is a lightweight and flexible alternative to 'pkgdown', with support for many documentation generators, including 'Quarto', 'Docute', 'Docsify', and 'MkDocs'.

Maintained by Etienne Bacher. Last updated 2 months ago.

5.3 match 72 stars 7.88 score 3 scripts

yihui

animation:A Gallery of Animations in Statistics and Utilities to Create Animations

Provides functions for animations in statistics, covering topics in probability theory, mathematical statistics, multivariate statistics, non-parametric statistics, sampling survey, linear models, time series, computational statistics, data mining and machine learning. These functions may be helpful in teaching statistics and data analysis. Also provided in this package are a series of functions to save animations to various formats, e.g. Flash, 'GIF', HTML pages, 'PDF' and videos. 'PDF' animations can be inserted into 'Sweave' / 'knitr' easily.

Maintained by Yihui Xie. Last updated 2 years ago.

animation statistical-computing statistical-graphics statistics

3.3 match 208 stars 12.08 score 2.5k scripts 29 dependents

nlsy-links

NlsyLinks:Utilities and Kinship Information for Research with the NLSY

Utilities and kinship information for behavior genetics and developmental research using the National Longitudinal Survey of Youth (NLSY; <https://www.nlsinfo.org/>).

Maintained by S. Mason Garrison. Last updated 8 days ago.

behavior-genetics kinship-information national-longitudinal-survey nlsy

5.0 match 7 stars 7.49 score 185 scripts

ropensci

rdhs:API Client and Dataset Management for the Demographic and Health Survey (DHS) Data

Provides a client for (1) querying the DHS API for survey indicators and metadata (<https://api.dhsprogram.com/#/index.html>), (2) identifying surveys and datasets for analysis, (3) downloading survey datasets from the DHS website, (4) loading datasets and associate metadata into R, and (5) extracting variables and combining datasets for pooled analysis.

Maintained by OJ Watson. Last updated 17 days ago.

dataset dhs dhs-api extract peer-reviewed survey-data

3.7 match 35 stars 10.07 score 286 scripts 3 dependents

dfv-ms

piwikproR:Access 'Piwik Pro' Website Statistics

Run Queries against the API of 'Piwik Pro' <https://developers.piwik.pro/en/latest/custom_reports/http_api/http_api.html>. The result is a tibble.

Maintained by Martin Stingl. Last updated 2 years ago.

piwik

9.3 match 4.00 score 7 scripts

r-forge

latticeExtra:Extra Graphical Utilities Based on Lattice

Building on the infrastructure provided by the lattice package, this package provides several new high-level functions and methods, as well as additional utilities such as panel and axis annotation functions.

Maintained by Deepayan Sarkar. Last updated 3 years ago.

3.6 match 10.18 score 2.6k scripts 233 dependents

bioc

decoupleR:decoupleR: Ensemble of computational methods to infer biological activities from omics data

Many methods allow us to extract biological activities from omics data using information from prior knowledge resources, reducing the dimensionality for increased statistical power and better interpretability. Here, we present decoupleR, a Bioconductor package containing different statistical methods to extract these signatures within a unified framework. decoupleR allows the user to flexibly test any method with any resource. It incorporates methods that take into account the sign and weight of network interactions. decoupleR can be used with any omic, as long as its features can be linked to a biological process based on prior knowledge. For example, in transcriptomics gene sets regulated by a transcription factor, or in phospho-proteomics phosphosites that are targeted by a kinase.

Maintained by Pau Badia-i-Mompel. Last updated 5 months ago.

differentialexpression functionalgenomics geneexpression generegulation network software statisticalmethod transcription

3.2 match 230 stars 11.27 score 316 scripts 3 dependents

rstudio

rsconnect:Deploy Docs, Apps, and APIs to 'Posit Connect', 'shinyapps.io', and 'RPubs'

Programmatic deployment interface for 'RPubs', 'shinyapps.io', and 'Posit Connect'. Supported content types include R Markdown documents, Shiny applications, Plumber APIs, plots, and static web content.

Maintained by Aron Atkins. Last updated 16 days ago.

2.3 match 139 stars 14.90 score 3.1k scripts 6 dependents

pharmar

riskmetric:Risk Metrics to Evaluating R Packages

Facilities for assessing R packages against a number of metrics to help quantify their robustness.

Maintained by Eli Miller. Last updated 9 days ago.

3.5 match 167 stars 8.89 score 43 scripts

modeloriented

modelDown:Make Static HTML Website for Predictive Models

Website generator with HTML summaries for predictive models. This package uses 'DALEX' explainers to describe global model behavior. We can see how well models behave (tabs: Model Performance, Auditor), how much each variable contributes to predictions (tabs: Variable Response) and which variables are the most important for a given model (tabs: Variable Importance). We can also compare Concept Drift for pairs of models (tabs: Drifter). Additionally, data available on the website can be easily recreated in current R session. Work on this package was financially supported by the NCN Opus grant 2017/27/B/ST6/01307 at Warsaw University of Technology, Faculty of Mathematics and Information Science.

Maintained by Kamil Romaszko. Last updated 4 years ago.

5.4 match 120 stars 5.80 score 15 scripts

ready4-dev

ready4:Develop and Use Modular Health Economic Models

A template model module, tools to help find model modules derived from this template and a programming syntax to use these modules in health economic analyses. These elements are the foundation for a prototype software framework for developing living and transferable models and using those models in reproducible health economic analyses. The software framework is extended by other R libraries. For detailed documentation about the framework and how to use it visit <https://www.ready4-dev.com/>. For a background to the methodological issues that the framework is attempting to help solve, see Hamilton et al. (2024) <doi:10.1007/s40273-024-01378-8>.

Maintained by Matthew Hamilton. Last updated 4 months ago.

computational-modeling health-economics software-framework

4.6 match 2 stars 6.84 score 95 scripts

hzambran

hydroTSM:Time Series Management and Analysis for Hydrological Modelling

S3 functions for management, analysis, interpolation and plotting of time series used in hydrology and related environmental sciences. In particular, this package is highly oriented to hydrological modelling tasks. The focus of this package has been put in providing a collection of tools useful for the daily work of hydrologists (although an effort was made to optimise each function as much as possible, functionality has had priority over speed). Bugs / comments / questions / collaboration of any kind are very welcomed, and in particular, datasets that can be included in this package for academic purposes.

Maintained by Mauricio Zambrano-Bigiarini. Last updated 1 months ago.

hydrology hydrology-modeling hydrology-statistical resource water-resources

3.0 match 45 stars 10.14 score 340 scripts 10 dependents

bioc

ELMER:Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

ELMER is designed to use DNA methylation and gene expression from a large number of samples to infere regulatory element landscape and transcription factor network in primary tissue.

Maintained by Tiago Chedraoui Silva. Last updated 5 months ago.

dnamethylation geneexpression motifannotation software generegulation transcription network

4.1 match 7.42 score 176 scripts

r-lib

ymlthis:Write 'YAML' for 'R Markdown', 'bookdown', 'blogdown', and More

Write 'YAML' front matter for R Markdown and related documents. Work with 'YAML' objects more naturally and write the resulting 'YAML' to your clipboard or to 'YAML' files related to your project.

Maintained by Malcolm Barrett. Last updated 3 years ago.

3.0 match 165 stars 9.91 score 196 scripts 14 dependents

husson

FactoMineR:Multivariate Exploratory Data Analysis and Data Mining

Exploratory data analysis methods to summarize, visualize and describe datasets. The main principal component methods are available, those with the largest potential in terms of applications: principal component analysis (PCA) when variables are quantitative, correspondence analysis (CA) and multiple correspondence analysis (MCA) when variables are categorical, Multiple Factor Analysis when variables are structured in groups, etc. and hierarchical cluster analysis. F. Husson, S. Le and J. Pages (2017).

Maintained by Francois Husson. Last updated 3 months ago.

2.0 match 47 stars 14.71 score 5.6k scripts 112 dependents

yuanchao-xu

gfer:Green Finance and Environmental Risk

Focuses on data collecting, analyzing and visualization in green finance and environmental risk research and analysis. Main function includes environmental data collecting from official websites such as MEP (Ministry of Environmental Protection of China, <https://www.mee.gov.cn>), water related projects identification and environmental data visualization.

Maintained by Yuanchao Xu. Last updated 3 months ago.

corporate-social-responsibility csr data-analysis data-scraping environmental-risk green-finance stock-data

5.9 match 8 stars 4.81 score 16 scripts

frbcesab

rcompendium:Create a Package or Research Compendium Structure

Makes easier the creation of R package or research compendium (i.e. a predefined files/folders structure) so that users can focus on the code/analysis instead of wasting time organizing files. A full ready-to-work structure is set up with some additional features: version control, remote repository creation, CI/CD configuration (check package integrity under several OS, test code with 'testthat', and build and deploy website using 'pkgdown'). This package heavily relies on the R packages 'devtools' and 'usethis' and follows recommendations made by Wickham H. (2015) <ISBN:9781491910597> and Marwick B. et al. (2018) <doi:10.7287/peerj.preprints.3192v2>.

Maintained by Nicolas Casajus. Last updated 1 months ago.

reproducible-research research-compendium

4.2 match 40 stars 6.72 score 22 scripts

carpentries

sandpaper:Create and Curate Carpentries Lessons

We provide tools to build a Carpentries-themed lesson repository into an accessible standalone static website. These include local tools and those designed to be used in a continuous integration context so that all the lesson author needs to focus on is writing the content of the actual lesson.

Maintained by Robert Davey. Last updated 2 months ago.

carpentries carpentries-infrastructure carpentries-workbench lesson-template lessons markdown static-site-generator

3.6 match 44 stars 7.72 score 8 scripts

petebaker

cropgrowdays:Crop Growing Degree Days and Agrometeorological Calculations

Calculate agrometeorological variables for crops including growing degree days (McMaster, GS & Wilhelm, WW (1997) <doi:10.1016/S0168-1923(97)00027-0>), cumulative rainfall, number of stress days and cumulative or mean radiation and evaporation. Convert dates to day of year and vice versa. Also, download curated and interpolated Australian weather data from the Queensland Government DES longpaddock website <https://www.longpaddock.qld.gov.au/>. This data is freely available under the Creative Commons 4.0 licence.

Maintained by Peter Baker. Last updated 1 years ago.

6.7 match 4.11 score 13 scripts

rntq472

RBNZ:Download Data from the Reserve Bank of New Zealand Website

Provides a convenient way of accessing data published by the Reserve Bank of New Zealand (RBNZ) on their website, <https://www.rbnz.govt.nz/statistics>. A range of financial and economic data is provided in spreadsheet format including exchange and interest rates, commercial lending statistics, Reserve Bank market operations, financial institution statistics, household financial data, New Zealand debt security information, and economic indicators. This package provides a method to download those spreadsheets and read them directly into R.

Maintained by Jasper Watson. Last updated 2 years ago.

6.8 match 2 stars 4.00 score 4 scripts

sstoeckl

FFdownload:Download Data from Kenneth French's Website

Downloads all the datasets (you can exclude the daily ones or specify a list of those you are targeting specifically) from Kenneth French's Website at <https://mba.tuck.dartmouth.edu/pages/faculty/ken.french/data_library.html>, process them and convert them to list of 'xts' (time series).

Maintained by Sebastian Stoeckl. Last updated 9 months ago.

5.3 match 9 stars 5.03 score 12 scripts

r-forge

car:Companion to Applied Regression

Functions to Accompany J. Fox and S. Weisberg, An R Companion to Applied Regression, Third Edition, Sage, 2019.

Maintained by John Fox. Last updated 5 months ago.

1.8 match 15.29 score 43k scripts 901 dependents

yihui

MSG:Data and Functions for the Book Modern Statistical Graphics

A companion to the Chinese book ``Modern Statistical Graphics''.

Maintained by Yihui Xie. Last updated 4 years ago.

chinese-book statistical-graphics

3.8 match 37 stars 6.99 score 133 scripts

seankross

postcards:Create Beautiful, Simple Personal Websites

A collection of R Markdown templates for creating simple and easy to personalize single page websites.

Maintained by Sean Kross. Last updated 3 years ago.

cc0 rmarkdown rmarkdown-template rstudio

3.5 match 559 stars 7.35 score 132 scripts

mhpob

matos:Interface with the Mid-Atlantic Acoustic Telemetry Observing System (MATOS)

This package provides HTML-scaping functions to interact with the MATOS website (https://matos.asascience.com/), allowing aggregation of data and the downloading and posting of files.

Maintained by Michael OBrien. Last updated 3 months ago.

animal-tracking api api-wrapper biotelemetry fish fisheries fisheries-research

5.9 match 3 stars 4.35 score 9 scripts

cloudyr

aws.s3:'AWS S3' Client Package

A simple client package for the Amazon Web Services ('AWS') Simple Storage Service ('S3') 'REST' 'API' <https://aws.amazon.com/s3/>.

Maintained by Simon Urbanek. Last updated 5 years ago.

amazon aws aws-s3 cloudyr s3 s3-storage

2.0 match 383 stars 12.47 score 1.4k scripts 17 dependents

bioc

GEOquery:Get data from NCBI Gene Expression Omnibus (GEO)

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data. Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.

Maintained by Sean Davis. Last updated 5 months ago.

microarray dataimport onechannel twochannel sage bioconductor bioinformatics data-science genomics ncbi-geo

1.7 match 92 stars 14.46 score 4.1k scripts 44 dependents

pepijn-devries

ECOTOXr:Download and Extract Data from US EPA's ECOTOX Database

The US EPA ECOTOX database is a freely available database with a treasure of aquatic and terrestrial ecotoxicological data. As the online search interface doesn't come with an API, this package provides the means to easily access and search the database in R. To this end, all raw tables are downloaded from the EPA website and stored in a local SQLite database <doi:10.1016/j.chemosphere.2024.143078>.

Maintained by Pepijn de Vries. Last updated 5 days ago.

3.9 match 10 stars 6.20 score 6 scripts

hugomflavio

actel:Acoustic Telemetry Data Analysis

Designed for studies where animals tagged with acoustic tags are expected to move through receiver arrays. This package combines the advantages of automatic sorting and checking of animal movements with the possibility for user intervention on tags that deviate from expected behaviour. The three analysis functions (explore(), migration() and residency()) allow the users to analyse their data in a systematic way, making it easy to compare results from different studies. CJS calculations are based on Perry et al. (2012) <https://www.researchgate.net/publication/256443823_Using_mark-recapture_models_to_estimate_survival_from_telemetry_data>.

Maintained by Hugo Flávio. Last updated 24 days ago.

acoustic-telemetry fish-packages telemetry-data

3.8 match 26 stars 6.49 score 16 scripts

thinkr-open

togglr:'Toggl.com' Api for 'Rstudio'

Use the <https://toggl.com> time tracker api through R.

Maintained by Vincent Guyader. Last updated 1 years ago.

hacktoberfest toggl-api toggler

3.5 match 49 stars 6.81 score 33 scripts

eliaskrainski

INLAspacetime:Spatial and Spatio-Temporal Models using 'INLA'

Prepare objects to implement models over spatial and spacetime domains with the 'INLA' package (<https://www.r-inla.org>). These objects contain data to for the 'cgeneric' interface in 'INLA', enabling fast parallel computations. We implemented the spatial barrier model, see Bakka et. al. (2019) <doi:10.1016/j.spasta.2019.01.002>, and some of the spatio-temporal models proposed in Lindgren et. al. (2023) <https://www.idescat.cat/sort/sort481/48.1.1.Lindgren-etal.pdf>. Details are provided in the available vignettes and from the URL bellow.

Maintained by Elias Teixeira Krainski. Last updated 3 days ago.

openblas

3.3 match 4 stars 7.05 score 56 scripts

dmurdoch

rgl:3D Visualization Using OpenGL

Provides medium to high level functions for 3D interactive graphics, including functions modelled on base graphics (plot3d(), etc.) as well as functions for constructing representations of geometric objects (cube3d(), etc.). Output may be on screen using OpenGL, or to various standard 3D file formats including WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.

Maintained by Duncan Murdoch. Last updated 2 months ago.

graphics opengl rgl webgl libglu libglvnd libpng libx11 freetype cpp

1.3 match 91 stars 17.49 score 7.3k scripts 300 dependents

dankelley

oce:Analysis of Oceanographic Data

Supports the analysis of Oceanographic data, including 'ADCP' measurements, measurements made with 'argo' floats, 'CTD' measurements, sectional data, sea-level time series, coastline and topographic data, etc. Provides specialized functions for calculating seawater properties such as potential temperature in either the 'UNESCO' or 'TEOS-10' equation of state. Produces graphical displays that conform to the conventions of the Oceanographic literature. This package is discussed extensively by Kelley (2018) "Oceanographic Analysis with R" <doi:10.1007/978-1-4939-8844-0>.

Maintained by Dan Kelley. Last updated 1 days ago.

oceanography fortran cpp

1.5 match 146 stars 15.42 score 4.2k scripts 18 dependents

kwb-r

kwb.site:R Package for Scraping Our Offical KWB Website (Before Re-Design in 2021)

This package contains functions for scraping our official [KWB website](https://kompetenz-wasser.de). The data for all projects and people can be collected in order to provide an overview of the website`s content and in order to be integrate that data into a KWB knowledge repo.

Maintained by Michael Rustler. Last updated 3 years ago.

knowledge-repo project-fakin r-selenium rvest web-scraping website

13.6 match 1.70 score 2 scripts

jdblischak

faviconPlease:Find the URL to the 'Favicon' for a Website

Finds the URL to the 'favicon' for a website. This is useful if you want to display the 'favicon' in an HTML document or web application, especially if the website is behind a firewall.

Maintained by John Blischak. Last updated 4 months ago.

favicon-grabber favicons

5.8 match 8 stars 3.90 score 3 scripts

yihui

servr:A Simple HTTP Server to Serve Static Files or Dynamic Documents

Start an HTTP server in R to serve static files, or dynamic documents that can be converted to HTML files (e.g., R Markdown) under a given directory.

Maintained by Yihui Xie. Last updated 2 months ago.

http-server web-server websocket

1.8 match 283 stars 12.51 score 190 scripts 94 dependents

icosa-grid

icosa:Global Triangular and Penta-Hexagonal Grids Based on Tessellated Icosahedra

Implementation of icosahedral grids in three dimensions. The spherical-triangular tessellation can be set to create grids with custom resolutions. Both the primary triangular and their inverted penta-hexagonal grids can be calculated. Additional functions are provided that allow plotting of the grids and associated data, the interaction of the grids with other raster and vector objects, and treating the grids as a graphs.

Maintained by Adam T. Kocsis. Last updated 7 months ago.

grid cpp

4.1 match 4 stars 5.41 score 65 scripts

msberends

AMR:Antimicrobial Resistance Data Analysis

Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in <doi:10.18637/jss.v104.i03>.

Maintained by Matthijs S. Berends. Last updated 3 hours ago.

amr antimicrobial-data epidemiology microbiology software

1.8 match 92 stars 11.87 score 182 scripts 6 dependents

predictiveecology

SpaDES.core:Core Utilities for Developing and Running Spatially Explicit Discrete Event Models

Provides the core framework for a discrete event system to implement a complete data-to-decisions, reproducible workflow. The core components facilitate the development of modular pieces, and enable the user to include additional functionality by running user-built modules. Includes conditional scheduling, restart after interruption, packaging of reusable modules, tools for developing arbitrary automated workflows, automated interweaving of modules of different temporal resolution, and tools for visualizing and understanding the within-project dependencies. The suggested package 'NLMR' can be installed from the repository (<https://PredictiveEcology.r-universe.dev>).

Maintained by Eliot J B McIntire. Last updated 19 days ago.

discrete-events-simulations simulation-framework simulation-modeling

2.0 match 10 stars 10.61 score 142 scripts 6 dependents

ropensci

cde:Download Data from the Catchment Data Explorer Website

Facilitates searching, download and plotting of Water Framework Directive (WFD) reporting data for all waterbodies within the UK Environment Agency area. The types of data that can be downloaded are: WFD status classification data, Reasons for Not Achieving Good (RNAG) status, objectives set for waterbodies, measures put in place to improve water quality and details of associated protected areas. The site accessed is <https://environment.data.gov.uk/catchment-planning/>. The data are made available under the Open Government Licence v3.0 <https://www.nationalarchives.gov.uk/doc/open-government-licence/version/3/>.

Maintained by Rob Briers. Last updated 5 months ago.

4.5 match 5 stars 4.52 score 22 scripts

manalytics

opitools:Analyzing the Opinions in a Big Text Document

Designed for performing impact analysis of opinions in a digital text document (DTD). The package allows a user to assess the extent to which a theme or subject within a document impacts the overall opinion expressed in the document. The package can be applied to a wide range of opinion-based DTD, including commentaries on social media platforms (such as 'Facebook', 'Twitter' and 'Youtube'), online products reviews, and so on. The utility of 'opitools' was originally demonstrated in Adepeju and Jimoh (2021) <doi:10.31235/osf.io/c32qh> in the assessment of COVID-19 impacts on neighbourhood policing using Twitter data. Further examples can be found in the vignette of the package.

Maintained by Monsuru Adepeju. Last updated 2 years ago.

3.8 match 12 stars 5.30 score 11 scripts

skvrnami

hlidacr:Access Data from the 'Hlídač Státu' API

Provides access to datasets published by 'Hlídač státu' <https://www.hlidacstatu.cz/>, a Czech watchdog, via their API.

Maintained by Michael Škvrňák. Last updated 3 years ago.

czech-republic datasets open-data

4.3 match 8 stars 4.60 score 6 scripts

uribo

jmastats:Download Weather Data from Japan Meteorological Agency Website

Provides features that allow users to download weather data published by the Japan Meteorological Agency (JMA) website (<https://www.jma.go.jp/jma/index.html>). The data includes information dating back to 1976 and aligns with the categories available on the website. Additionally, users can process the best track data of typhoons and easily handle earthquake record files.

Maintained by Shinya Uryu. Last updated 2 months ago.

climate-change weather

3.6 match 23 stars 5.36 score 25 scripts

discindo

newscatcheR:Programmatically Collect Normalized News from (Almost) Any Website

Programmatically collect normalized news from (almost) any website. An 'R' clone of the <https://github.com/kotartemiy/newscatcher> 'Python' module.

Maintained by Novica Nakov. Last updated 1 years ago.

hacktoberfest news-sites newscatcher rss-feed tidyrss

3.5 match 30 stars 5.65 score 7 scripts

fishr-core-team

FSA:Simple Fisheries Stock Assessment Methods

A variety of simple fish stock assessment methods.

Maintained by Derek H. Ogle. Last updated 2 months ago.

fish fisheries fisheries-management fisheries-stock-assessment population-dynamics stock-assessment

1.8 match 68 stars 11.08 score 1.7k scripts 6 dependents

giocomai

latlon2map:Facilitates matching lat/lon data with administrative units and other geographic shapes

Facilitates matching lat/lon data with administrative units and other geographic shapes

Maintained by Giorgio Comai. Last updated 5 months ago.

rspatial shiny

5.2 match 10 stars 3.70 score

pedropark99

figma:Web Client/Wrapper to the 'Figma API'

An easy-to-use web client/wrapper for the 'Figma API' <https://www.figma.com/developers/api>. It allows you to bring all data from a 'Figma' file to your 'R' session. This includes the data of all objects that you have drawn in this file, and their respective canvas/page metadata.

Maintained by Pedro Faria. Last updated 2 years ago.

api api-rest figma

3.6 match 4 stars 5.30 score 33 scripts

ncss-tech

sharpshootR:A Soil Survey Toolkit

A collection of data processing, visualization, and export functions to support soil survey operations. Many of the functions build on the `SoilProfileCollection` S4 class provided by the aqp package, extending baseline visualization to more elaborate depictions in the context of spatial and taxonomic data. While this package is primarily developed by and for the USDA-NRCS, in support of the National Cooperative Soil Survey, the authors strive for generalization sufficient to support any soil survey operation. Many of the included functions are used by the SoilWeb suite of websites and movile applications. These functions are provided here, with additional documentation, to enable others to replicate high quality versions of these figures for their own purposes.

Maintained by Dylan Beaudette. Last updated 13 days ago.

2.2 match 18 stars 8.37 score 327 scripts

ipums

ipumsr:An R Interface for Downloading, Reading, and Handling IPUMS Data

An easy way to work with census, survey, and geographic data provided by IPUMS in R. Generate and download data through the IPUMS API and load IPUMS files into R with their associated metadata to make analysis easier. IPUMS data describing 1.4 billion individuals drawn from over 750 censuses and surveys is available free of charge from the IPUMS website <https://www.ipums.org>.

Maintained by Derek Burk. Last updated 19 days ago.

1.7 match 28 stars 11.07 score 720 scripts 2 dependents

norival

theiaR:Download and Manage Data from Theia

Provides a simple interface to search available data provided by Theia (<https://theia.cnes.fr>), download it, and manage it. Data can be downloaded based on a search result or from a cart file downloaded from Theia website.

Maintained by Xavier Laviron. Last updated 2 years ago.

4.4 match 3 stars 4.18 score 7 scripts

nareal

frenchdata:Download Data Sets from Kenneth's French Finance Data Library Site

Download data sets from Kenneth's French finance data library site <http://mba.tuck.dartmouth.edu/pages/faculty/ken.french/data_library.html>, reads all the data subsets from the file. Allows R users to collect the data as 'tidyverse'-ready data frames.

Maintained by Nelson Areal. Last updated 12 months ago.

data finance

3.4 match 11 stars 5.36 score 42 scripts

gk-crop

simplaceUtil:Provides Utility Functions and ShinyApps to work with the modeling framework 'SIMPLACE'

Provides Utility Functions and ShinyApps to work with the modeling framework 'SIMPLACE'. It visualises components of a solution, runs simulations and displays results.

Maintained by Gunther Krauss. Last updated 20 days ago.

openjdk

5.2 match 1 stars 3.48 score 2 scripts

paolomaranzano

ARPALData:Retrieving and Analyzing Air Quality and Weather Data from ARPA Lombardia

Contains functions for retrieving, managing and analysing air quality and weather data from Regione Lombardia open database (<https://www.dati.lombardia.it/>). Data are collected by ARPA Lombardia (Lombardia Environmental Protection Agency), Italy, through its ground monitoring network (<https://www.dati.lombardia.it/stories/s/auv9-c2sj>). See the webpage <https://www.arpalombardia.it/> for further information on ARPA Lombardia's activities and history. Data quality (e.g. missing values, exported values, graphical mapping) has been checked involving members of the ARPA Lombardia's office for air quality control. The package makes available observations since 1989 (for weather) and 1968 (for air quality) and are updated with daily frequency by the regional agency. Full description of the package can be retrieved in the companion paper Maranzano \& Algieri (2024), "ARPALData: an R package for retrieving and analyzing air quality and weather data from ARPA Lombardia (Italy)", Environmental and Ecological Statistics, <doi:10.1007/s10651-024-00599-6>.

Maintained by Paolo Maranzano. Last updated 2 months ago.

10.1 match 1.76 score 19 scripts

troyhill

VulnToolkit:Analysis of Tidal Datasets

Contains functions for analysis and summary of tidal datasets. Also provides access to tidal data collected by the National Oceanic and Atmospheric Administration's Center for Operational Oceanographic Products and Services and the Permanent Service for Mean Sea Level. For detailed description and application examples, see Hill, T.D. and S.C. Anisfeld (2021) <doi:10.6084/m9.figshare.14161202.v1> and Hill, T.D. and S.C. Anisfeld (2015) <doi:10.1016/j.ecss.2015.06.004>.

Maintained by Troy Hill. Last updated 4 years ago.

3.4 match 8 stars 5.18 score 19 scripts

lazappi

clamour:Website for Twitter analysis results

clamour provides a template for setting up a website to display the results of analysis of Twitter hashtags.

Maintained by Luke Zappia. Last updated 5 years ago.

analysis twitter

5.2 match 5 stars 3.40 score 2 scripts

yanrong-stacy-song

creditr:Credit Default Swaps

Price credit default swaps using 'C' code from the International Swaps and Derivatives Association CDS Standard Model. See <https://www.cdsmodel.com/cdsmodel/documentation.html> for more information about the model and <https://www.cdsmodel.com/cdsmodel/cds-disclaimer.html> for license details for the 'C' code.

Maintained by Yanrong Song. Last updated 20 days ago.

3.5 match 4.98 score 32 scripts

bayesball

ProbBayes:Probability and Bayesian Modeling

Functions and datasets to accompany J. Albert and J. Hu, "Probability and Bayesian Modeling", CRC Press, (2019, ISBN: 1138492566).

Maintained by Jim Albert. Last updated 4 years ago.

4.0 match 5 stars 4.30 score 80 scripts

yulab-smu

scholar:Analyse Citation Data from Google Scholar

Provides functions to extract citation data from Google Scholar. Convenience functions are also provided for comparing multiple scholars and predicting future h-index values.

Maintained by Guangchuang Yu. Last updated 1 years ago.

1.8 match 43 stars 9.63 score 468 scripts 3 dependents

sportsdataverse

hoopR:Access Men's Basketball Play by Play Data

A utility to quickly obtain clean and tidy men's basketball play by play data. Provides functions to access live play by play and box score data from ESPN<https://www.espn.com> with shot locations when available. It is also a full NBA Stats API<https://www.nba.com/stats/> wrapper. It is also a scraping and aggregating interface for Ken Pomeroy's men's college basketball statistics website<https://kenpom.com>. It provides users with an active subscription the capability to scrape the website tables and analyze the data for themselves.

Maintained by Saiem Gilani. Last updated 1 years ago.

basketball college-basketball espn kenpom nba nba-analytics nba-api nba-data nba-statistics nba-stats nba-stats-api ncaa ncaa-basketball ncaa-bracket ncaa-players ncaa-ratings ncaam sportsdataverse

2.4 match 91 stars 6.93 score 261 scripts

natverse

nat:NeuroAnatomy Toolbox for Analysis of 3D Image Data

NeuroAnatomy Toolbox (nat) enables analysis and visualisation of 3D biological image data, especially traced neurons. Reads and writes 3D images in NRRD and 'Amira' AmiraMesh formats and reads surfaces in 'Amira' hxsurf format. Traced neurons can be imported from and written to SWC and 'Amira' LineSet and SkeletonGraph formats. These data can then be visualised in 3D via 'rgl', manipulated including applying calculated registrations, e.g. using the 'CMTK' registration suite, and analysed. There is also a simple representation for neurons that have been subjected to 3D skeletonisation but not formally traced; this allows morphological comparison between neurons including searches and clustering (via the 'nat.nblast' extension package).

Maintained by Gregory Jefferis. Last updated 5 months ago.

3d connectomics image-analysis neuroanatomy neuroanatomy-toolbox neuron neuron-morphology neuroscience visualisation

1.7 match 67 stars 9.94 score 436 scripts 2 dependents

bioc

recount:Explore and download data from the recount project

Explore and download data from the recount project available at https://jhubiostatistics.shinyapps.io/recount/. Using the recount package you can download RangedSummarizedExperiment objects at the gene, exon or exon-exon junctions level, the raw counts, the phenotype metadata used, the urls to the sample coverage bigWig files or the mean coverage bigWig file for a particular study. The RangedSummarizedExperiment objects can be used by different packages for performing differential expression analysis. Using http://bioconductor.org/packages/derfinder you can perform annotation-agnostic differential expression analyses with the data from the recount project as described at http://www.nature.com/nbt/journal/v35/n4/full/nbt.3838.html.

Maintained by Leonardo Collado-Torres. Last updated 3 months ago.

coverage differentialexpression geneexpression rnaseq sequencing software dataimport immunooncology annotation-agnostic bioconductor count derfinder deseq2 exon gene human illumina junction recount

1.8 match 41 stars 9.57 score 498 scripts 3 dependents

ropensci

tidyhydat:Extract and Tidy Canadian 'Hydrometric' Data

Provides functions to access historical and real-time national 'hydrometric' data from Water Survey of Canada data sources (<https://dd.weather.gc.ca/hydrometric/csv/> and <https://collaboration.cmc.ec.gc.ca/cmc/hydrometrics/www/>) and then applies tidy data principles.

Maintained by Sam Albers. Last updated 5 days ago.

citz government-data hydrology hydrometrics tidy-data water-resources

1.7 match 71 stars 9.59 score 202 scripts 3 dependents

davidruvolo51

rdConvert:Convert Rd files to Markdown files loaded with YAML

As R6 class for converting Rd files to markdown with YAML headers. This may be useful if you wish to use package documentation in static site generators outside of the R ecosystem (e.g., React, Vue, Svelte, Gatsby, etc.). By default, Rd files are rendered into their own directory with an independent `index.md` file. The Rd name is parsed and set as the child directory name.

Maintained by David Ruvolo. Last updated 4 years ago.

gatsby-template package-development rmarkdown rmarkdown-websites workflow

7.5 match 3 stars 2.18 score

jimmyday12

fitzRoy:Easily Scrape and Process AFL Data

An easy package for scraping and processing Australia Rules Football (AFL) data. 'fitzRoy' provides a range of functions for accessing publicly available data from 'AFL Tables' <https://afltables.com/afl/afl_index.html>, 'Footy Wire' <https://www.footywire.com> and 'The Squiggle' <https://squiggle.com.au>. Further functions allow for easy processing, cleaning and transformation of this data into formats that can be used for analysis.

Maintained by James Day. Last updated 2 months ago.

1.5 match 134 stars 10.74 score 324 scripts

zyang2k

bluebike:Blue Bike Comprehensive Data

Facilitates the importation of the Boston Blue Bike trip data since 2015. Functions include the computation of trip distances of given trip data. It can also map the location of stations within a given radius and calculate the distance to nearby stations. Data is from <https://www.bluebikes.com/system-data>.

Maintained by Ziyue Yang. Last updated 3 years ago.

3.4 match 4 stars 4.60 score 7 scripts

great-northern-diver

loon:Interactive Statistical Data Visualization

An extendable toolkit for interactive data visualization and exploration.

Maintained by R. Wayne Oldford. Last updated 2 years ago.

data-analysis data-science data-visualization exploratory-analysis exploratory-data-analysis high-dimensional-data interactive-graphics interactive-visualizations loon python statistical-analysis statistical-graphics statistics tcl-extension tk

1.7 match 48 stars 9.00 score 93 scripts 5 dependents

mattcowgill

readabs:Download and Tidy Time Series Data from the Australian Bureau of Statistics

Downloads, imports, and tidies time series data from the Australian Bureau of Statistics <https://www.abs.gov.au/>.

Maintained by Matt Cowgill. Last updated 15 days ago.

abs australia australian-bureau-of-statistics australian-data statistics tidy-data time-series

1.7 match 104 stars 8.85 score 180 scripts

mikelydeamore

condensr:Academic Group Website Generator

Helps automate 'Quarto' website creation for small academic groups. Builds a database-like structure of people, projects and publications, linking them together with a string-based ID system. Then, provides functions to automate production of clean markdown for these structures, and in-built CSS formatting using CSS flexbox.

Maintained by Michael Lydeamore. Last updated 2 years ago.

5.5 match 1 stars 2.70 score 6 scripts

sebastien-plutniak

archeoViz:Visualisation, Exploration, and Web Communication of Archaeological Spatial Data

An R 'Shiny' application for visual and statistical exploration and web communication of archaeological spatial data, either remains or sites. It offers interactive 3D and 2D visualisations (cross sections and maps of remains, timeline of the work made in a site) which can be exported in SVG and HTML formats. It performs simple spatial statistics (convex hull, regression surfaces, 2D kernel density estimation) and allows exporting data to other online applications for more complex methods. 'archeoViz' can be used offline locally or deployed on a server, either with interactive input of data or with a static data set. Example is provided at <https://analytics.huma-num.fr/archeoviz/en>.

Maintained by Sebastien Plutniak. Last updated 1 months ago.

archaeology archeology data-visualization

2.0 match 19 stars 7.23 score 6 scripts

sbgraves237

Ecfun:Functions for 'Ecdat'

Functions and vignettes to update data sets in 'Ecdat' and to create, manipulate, plot, and analyze those and similar data sets.

Maintained by Spencer Graves. Last updated 4 months ago.

1.8 match 7.94 score 85 scripts 4 dependents

ropensci

UCSCXenaTools:Download and Explore Datasets from UCSC Xena Data Hubs

Download and explore datasets from UCSC Xena data hubs, which are a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others. Databases are normalized so they can be combined, linked, filtered, explored and downloaded.

Maintained by Shixiang Wang. Last updated 5 months ago.

api-client bioinformatics ccle downloader icgc tcga toil treehouse ucsc ucsc-xena

1.7 match 106 stars 8.55 score 163 scripts 1 dependents

chuxinyuan

ecce:Translate English Sentence into Chinese, or Translate Chinese Sentence into English

If translate English or Chinese sentence, there is a faster way for R user. You can pass in an English or Chinese sentence, ecce package support both English and Chinese translation. It also support browse translation results in website. In addition, also support obtain the pinyin of the Chinese character, you can more easily understand the pronunciation of the Chinese character.

Maintained by Xinyuan Chu. Last updated 9 months ago.

3.5 match 4.00 score 4 scripts

sem-in-r

seminr:Building and Estimating Structural Equation Models

A powerful, easy to syntax for specifying and estimating complex Structural Equation Models. Models can be estimated using Partial Least Squares Path Modeling or Covariance-Based Structural Equation Modeling or covariance based Confirmatory Factor Analysis. Methods described in Ray, Danks, and Valdez (2021).

Maintained by Nicholas Patrick Danks. Last updated 3 years ago.

common-factors composites construct pls-models

1.8 match 62 stars 7.46 score 284 scripts

nifu-no

saros.base:Base Tools for Semi-Automatic Reporting of Ordinary Surveys

Scaffold an entire web-based report using template chunks, based on a small chapter overview and a dataset. Highly adaptable with prefixes, suffixes, translations, etc. Also contains tools for password-protecting, e.g. for each organization's report on a website. Developed for the common case of a survey across multiple organizations/sites where each organization wants to obtain results for their organization compared with everyone else. See 'saros' (<https://CRAN.R-project.org/package=saros>) for tools used for authors in the drafted reports.

Maintained by Stephan Daus. Last updated 1 months ago.

2.2 match 1 stars 5.98 score 7 scripts

tidy-finance

tidyfinance:Tidy Finance Helper Functions

Helper functions for empirical research in financial economics, addressing a variety of topics covered in Scheuch, Voigt, and Weiss (2023) <doi:10.1201/b23237>. The package is designed to provide shortcuts for issues extensively discussed in the book, facilitating easier application of its concepts. For more information and resources related to the book, visit <https://www.tidy-finance.org/r/index.html>.

Maintained by Christoph Scheuch. Last updated 3 months ago.

finance

1.7 match 15 stars 7.56 score 24 scripts

ropensci

babelquarto:Renders a Multilingual Quarto Book

Automate rendering and cross-linking of Quarto books following a prescribed structure.

Maintained by Maëlle Salmon. Last updated 1 months ago.

1.7 match 43 stars 7.52 score 23 scripts 1 dependents

smouksassi

ggquickeda:Quickly Explore Your Data Using 'ggplot2' and 'table1' Summary Tables

Quickly and easily perform exploratory data analysis by uploading your data as a 'csv' file. Start generating insights using 'ggplot2' plots and 'table1' tables with descriptive stats, all using an easy-to-use point and click 'Shiny' interface.

Maintained by Samer Mouksassi. Last updated 10 hours ago.

1.5 match 73 stars 8.34 score 27 scripts

ropensci

fingertipsR:Fingertips Data for Public Health

Fingertips (<http://fingertips.phe.org.uk/>) contains data for many indicators of public health in England. The underlying data is now more easily accessible by making use of the API.

Maintained by Annabel Westermann. Last updated 1 years ago.

api-wrapper fingertips health open-data peer-reviewed public-health public-health-england

1.6 match 96 stars 7.89 score 268 scripts 1 dependents

csdaw

uniprotREST:R wrapper for the UniProt website REST API

Simple functions to access the UniProt website REST API. Wraps httr2 functions to easily map IDs and query all available databases.

Maintained by Charlotte Dawson. Last updated 2 years ago.

rest-api uniprot

3.4 match 7 stars 3.69 score 14 scripts

kjhealy

gssrdoc:Document General Social Survey Variable

The General Social Survey (GSS) is a long-running, mostly annual survey of US households. It is administered by the National Opinion Research Center (NORC). This package contains the a tibble with information on the survey variables, together with every variable documented as an R help page. For more information on the GSS see \url{http://gss.norc.org}.

Maintained by Kieran Healy. Last updated 11 months ago.

5.5 match 2.28 score 38 scripts

paul-carteron

happign:R Interface to 'IGN' Web Services

Automatic open data acquisition from resources of IGN ('Institut National de Information Geographique et forestiere') (<https://www.ign.fr/>). Available datasets include various types of raster and vector data, such as digital elevation models, state borders, spatial databases, cadastral parcels, and more. There also access to point clouds data ('LIDAR') and specifics API (<https://apicarto.ign.fr/api/doc/>).

Maintained by Paul Carteron. Last updated 2 months ago.

1.8 match 29 stars 6.88 score 35 scripts

msperlin

BatchGetSymbols:Downloads and Organizes Financial Data for Multiple Tickers

Makes it easy to download financial data from Yahoo Finance <https://finance.yahoo.com/>.

Maintained by Marcelo Perlin. Last updated 3 years ago.

financial-data individual-stocks tickers yahoo-finance

1.7 match 18 stars 7.21 score 393 scripts

fschaffner

websearchr:Access Domains and Search Popular Websites

Functions for accessing domains and a number of search engines.

Maintained by Florian S. Schaffner. Last updated 5 years ago.

internet search search-engine web

3.0 match 11 stars 4.04 score 20 scripts

mlampros

IceSat2R:ICESat-2 Altimeter Data using R

Programmatic connection to the 'OpenAltimetry API' <https://openaltimetry.earthdatacloud.nasa.gov/data/openapi/swagger-ui/index.html/> to download and process 'ATL03' (Global Geolocated Photon Data), 'ATL06' (Land Ice Height), 'ATL07' (Sea Ice Height), 'ATL08' (Land and Vegetation Height), 'ATL10' (Sea Ice Freeboard), 'ATL12' (Ocean Surface Height) and 'ATL13' (Inland Water Surface Height) 'ICESat-2' Altimeter Data. The user has the option to download the data by selecting a bounding box from a 1- or 5-degree grid globally utilizing a shiny application. The 'ICESat-2' mission collects altimetry data of the Earth's surface. The sole instrument on 'ICESat-2' is the Advanced Topographic Laser Altimeter System (ATLAS) instrument that measures ice sheet elevation change and sea ice thickness, while also generating an estimate of global vegetation biomass. 'ICESat-2' continues the important observations of ice-sheet elevation change, sea-ice freeboard, and vegetation canopy height begun by 'ICESat' in 2003.

Maintained by Lampros Mouselimis. Last updated 1 months ago.

icesat-2 openaltimetry

1.8 match 12 stars 6.64 score 3 scripts

bioc

biocViews:Categorized views of R package repositories

Infrastructure to support 'views' used to classify Bioconductor packages. 'biocViews' are directed acyclic graphs of terms from a controlled vocabulary. There are three major classifications, corresponding to 'software', 'annotation', and 'experiment data' packages.

Maintained by Bioconductor Package Maintainer. Last updated 5 months ago.

infrastructure bioconductor-package core-package

1.2 match 4 stars 9.71 score 30 scripts 14 dependents

openwashdata

washr:Publication Toolkit for Water, Sanitation and Hygiene (WASH) Data

A toolkit to set up an R data package in a consistent structure. Automates tasks like tidy data export, data dictionary documentation, README and website creation, and citation management.

Maintained by Colin Walder. Last updated 4 months ago.

2.3 match 2 stars 4.95 score 7 scripts

ropengov

europarl:Scrap Data from Europarlament's Website

Scrap data from europarlament's website.

Maintained by The package maintainer. Last updated 2 years ago.

ropengov

3.8 match 11 stars 3.04 score

r-ifpe

sistec:Tools to Analyze 'Sistec' Datasets

The Brazilian system for diploma registration and validation on technical and superior courses are managing by 'Sistec' platform, see <https://sistec.mec.gov.br/>. This package provides tools for Brazilian institutions to update the student's registration and make data analysis about their situation, retention and drop out.

Maintained by Samuel Macêdo. Last updated 4 years ago.

shiny sistec

3.2 match 6 stars 3.52 score 11 scripts

ropensci

r2readthedocs:Convert R Package Documentation to a 'readthedocs' Website

Convert R package documentation to a 'readthedocs' website.

Maintained by Mark Padgham. Last updated 9 months ago.

3.5 match 16 stars 3.20 score 1 scripts

chiliubio

file2meco:Transform Files to 'microtable' Object with 'microeco' Package

Transform output files of some tools to the 'microtable' object of 'microtable' class in 'microeco' package. The 'microtable' class is the basic class in 'microeco' package and is necessary for the downstream microbial community data analysis.

Maintained by Chi Liu. Last updated 3 months ago.

1.8 match 25 stars 6.12 score 75 scripts

bioc

SurfR:Surface Protein Prediction and Identification

Identify Surface Protein coding genes from a list of candidates. Systematically download data from GEO and TCGA or use your own data. Perform DGE on bulk RNAseq data. Perform Meta-analysis. Descriptive enrichment analysis and plots.

Maintained by Aurora Maurizio. Last updated 2 days ago.

software sequencing rnaseq geneexpression transcription differentialexpression principalcomponent genesetenrichment pathways batcheffect functionalgenomics visualization dataimport functionalprediction geneprediction go dge enrichment-analysis metaanalysis plots proteins public-data surface surfaceome

2.0 match 3 stars 5.43 score 3 scripts

msperlin

GetTDData:Get Data for Brazilian Bonds (Tesouro Direto)

Downloads and aggregates data for Brazilian government issued bonds directly from the website of Tesouro Direto <https://www.tesourodireto.com.br/>.

Maintained by Marcelo Perlin. Last updated 7 months ago.

2.2 match 23 stars 4.79 score 27 scripts

calcita

ech:Downloading and Processing Microdata from ECH-INE (Uruguay)

A consistent tool for downloading ECH data, processing them and generating new indicators: poverty, education, employment, etc. All data are downloaded from the official site of the National Institute of Statistics at <https://www.gub.uy/instituto-nacional-estadistica/datos-y-estadisticas/encuestas/encuesta-continua-hogares>.

Maintained by Gabriela Mathieu. Last updated 1 years ago.

1.7 match 16 stars 6.15 score 22 scripts

blue-matter

openMSE:Easily Install and Load the 'openMSE' Packages

The 'openMSE' package is designed for building operating models, doing simulation modelling and management strategy evaluation for fisheries. 'openMSE' is an umbrella package for the 'MSEtool' (Management Strategy Evaluation toolkit), 'DLMtool' (Data-Limited Methods toolkit), and SAMtool (Stock Assessment Methods toolkit) packages. By loading and installing 'openMSE', users have access to the full functionality contained within these packages. Learn more about 'openMSE' at <https://openmse.com/>.

Maintained by Adrian Hordyk. Last updated 6 months ago.

1.9 match 14 stars 5.57 score 89 scripts

eikeluedeling

chillR:Statistical Methods for Phenology Analysis in Temperate Fruit Trees

The phenology of plants (i.e. the timing of their annual life phases) depends on climatic cues. For temperate trees and many other plants, spring phases, such as leaf emergence and flowering, have been found to result from the effects of both cool (chilling) conditions and heat. Fruit tree scientists (pomologists) have developed some metrics to quantify chilling and heat (e.g. see Luedeling (2012) <doi:10.1016/j.scienta.2012.07.011>). 'chillR' contains functions for processing temperature records into chilling (Chilling Hours, Utah Chill Units and Chill Portions) and heat units (Growing Degree Hours). Regarding chilling metrics, Chill Portions are often considered the most promising, but they are difficult to calculate. This package makes it easy. 'chillR' also contains procedures for conducting a PLS analysis relating phenological dates (e.g. bloom dates) to either mean temperatures or mean chill and heat accumulation rates, based on long-term weather and phenology records (Luedeling and Gassner (2012) <doi:10.1016/j.agrformet.2011.10.020>). As of version 0.65, it also includes functions for generating weather scenarios with a weather generator, for conducting climate change analyses for temperature-based climatic metrics and for plotting results from such analyses. Since version 0.70, 'chillR' contains a function for interpolating hourly temperature records.

Maintained by Eike Luedeling. Last updated 4 months ago.

cpp

1.7 match 3 stars 6.13 score 346 scripts 1 dependents

amalan-constat

SouthParkRshiny:Data and 'Shiny' Application for the Show 'SouthPark'

Ratings, votes, swear words and sentiments are analysed for the show 'SouthPark' through a 'Shiny' application after web scraping from 'IMDB' and the website <https://southpark.fandom.com/wiki/South_Park_Archives>.

Maintained by Amalan Mahendran. Last updated 1 years ago.

3.7 match 1 stars 2.70 score

forestgeo

fgeo:Analyze Forest Diversity and Dynamics

To help you access, transform, analyze, and visualize ForestGEO data, we developed a collection of R packages (<https://forestgeo.github.io/fgeo/>). This package, in particular, helps you to install and load the entire package-collection with a single R command, and provides convenient ways to find relevant documentation. Most commonly, you should not worry about the individual packages that make up the package-collection as you can access all features via this package. To learn more about ForestGEO visit <http://www.forestgeo.si.edu/>.

Maintained by Mauro Lepore. Last updated 5 years ago.

abundance demography dynamic dynamics ecology fgeo forestgeo forests habitat metapackage tree

1.8 match 31 stars 5.50 score 12 scripts

ropengov

rogtemplate:'pkgdown' Template for 'rOpenGov' Packages

This is a private template for use by core rOpenGov packages. Please don’t use for your own code.

Maintained by Diego Hernangómez. Last updated 1 months ago.

ropengov template github-actions pkgdown pkgdown-template

1.9 match 2 stars 5.16 score 3 scripts

psolymos

mefa:Multivariate Data Handling in Ecology and Biogeography

A framework package aimed to provide standardized computational environment for specialist work via object classes to represent the data coded by samples, taxa and segments (i.e. subpopulations, repeated measures). It supports easy processing of the data along with cross tabulation and relational data tables for samples and taxa. An object of class `mefa' is a project specific compendium of the data and can be easily used in further analyses. Methods are provided for extraction, aggregation, conversion, plotting, summary and reporting of `mefa' objects. Reports can be generated in plain text or LaTeX format. Vignette contains worked examples.

Maintained by Peter Solymos. Last updated 10 months ago.

2.0 match 2 stars 4.82 score 111 scripts 2 dependents

ocean-tracking-network

glatos:A package for the Great Lakes Acoustic Telemetry Observation System

Functions useful to members of the Great Lakes Acoustic Telemetry Observation System https://glatos.glos.us; many more broadly relevant to simulating, processing, analysing, and visualizing acoustic telemetry data.

Maintained by Christopher Holbrook. Last updated 6 months ago.

1.5 match 10 stars 6.38 score 112 scripts

nateybear

probstats4econ:Companion Package to Probability and Statistics for Economics and Business

Utilities for multiple hypothesis testing, companion datasets from "Probability and Statistics for Economics and Business: An Introduction Using R" by Jason Abrevaya (MIT Press, under contract).

Maintained by Nathan Gardner Hattersley. Last updated 7 months ago.

7.3 match 1.30 score

thinkr-open

rtodoist:Create and Manage Todolist using 'Todoist.com' API

Allows you to interact with the API of the "Todoist" platform. 'Todoist' <https://todoist.com/> provides an online task manager service for teams.

Maintained by Cervan Girard. Last updated 2 years ago.

2.0 match 12 stars 4.78 score 7 scripts

unhcr-dataviz

unhcrdown:UNHCR Branded Templates for R Markdown Documents

Create United Nations High Commissioner for Refugees (UNHCR) branded documents, presentations, and reports using R Markdown templates. This package provides customized formats that align with UNHCR's official brand guidelines for creating professional PDF reports, Word documents, PowerPoint presentations, and HTML outputs.

Maintained by Cédric Vidonne. Last updated 2 months ago.

pagedown rmarkdown rmarkdown-template xaringan

1.8 match 19 stars 5.28 score 1 scripts

marcinkosinski

archivist.github:Tools for Archiving, Managing and Sharing R Objects via GitHub

The extension of the 'archivist' package integrating the archivist with GitHub via GitHub API, 'git2r' packages and 'httr' package.

Maintained by Marcin Kosinski. Last updated 7 years ago.

2.0 match 5 stars 4.74 score 11 scripts

bioc

HiTC:High Throughput Chromosome Conformation Capture analysis

The HiTC package was developed to explore high-throughput 'C' data such as 5C or Hi-C. Dedicated R classes as well as standard methods for quality controls, normalization, visualization, and further analysis are also provided.

Maintained by Nicolas Servant. Last updated 5 months ago.

sequencing highthroughputsequencing hic

1.8 match 5.40 score 42 scripts

bioc

Anaquin:Statistical analysis of sequins

The project is intended to support the use of sequins (synthetic sequencing spike-in controls) owned and made available by the Garvan Institute of Medical Research. The goal is to provide a standard open source library for quantitative analysis, modelling and visualization of spike-in controls.

Maintained by Ted Wong. Last updated 5 months ago.

immunooncology differentialexpression preprocessing rnaseq geneexpression software

2.0 match 4.65 score 45 scripts

gagolews

stringi:Fast and Portable Character String Processing Facilities

A collection of character string/text/natural language processing tools for pattern searching (e.g., with 'Java'-like regular expressions or the 'Unicode' collation algorithm), random string generation, case mapping, string transliteration, concatenation, sorting, padding, wrapping, Unicode normalisation, date-time formatting and parsing, and many more. They are fast, consistent, convenient, and - thanks to 'ICU' (International Components for Unicode) - portable across all locales and platforms. Documentation about 'stringi' is provided via its website at <https://stringi.gagolewski.com/> and the paper by Gagolewski (2022, <doi:10.18637/jss.v103.i02>).

Maintained by Marek Gagolewski. Last updated 1 months ago.

icu icu4c natural-language-processing nlp regex regexp string-manipulation stringi stringr text text-processing tidy-data unicode cpp

0.5 match 309 stars 18.31 score 10k scripts 8.6k dependents

vanzanden

ggsolvencyii:A 'ggplot2'-Plot of Composition of Solvency II SCR: SF and IM

An implementation of 'ggplot2'-methods to present the composition of Solvency II Solvency Capital Requirement (SCR) as a series of concentric circle-parts. Solvency II (Solvency 2) is European insurance legislation, coming in force by the delegated acts of October 10, 2014. <https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=OJ%3AL%3A2015%3A012%3ATOC>. Additional files, defining the structure of the Standard Formula (SF) method of the SCR-calculation are provided. The structure files can be adopted for localization or for insurance companies who use Internal Models (IM). Options are available for combining smaller components, horizontal and vertical scaling, rotation, and plotting only some circle-parts. With outlines and connectors several SCR-compositions can be compared, for example in ORSA-scenarios (Own Risk and Solvency Assessment).

Maintained by Marco van Zanden. Last updated 6 years ago.

1.6 match 3 stars 5.58 score 63 scripts

tscnlab

LightLogR:Process Data from Wearable Light Loggers and Optical Radiation Dosimeters

Import, processing, validation, and visualization of personal light exposure measurement data from wearable devices. The package implements features such as the import of data and metadata files, conversion of common file formats, validation of light logging data, verification of crucial metadata, calculation of common parameters, and semi-automated analysis and visualization.

Maintained by Johannes Zauner. Last updated 24 days ago.

dosimetry light time-series-analysis wearable-devices wearable-sensors

1.5 match 12 stars 5.91 score 28 scripts

ropensci

dataspice:Create Lightweight Schema.org Descriptions of Data

The goal of 'dataspice' is to make it easier for researchers to create basic, lightweight, and concise metadata files for their datasets. These basic files can then be used to make useful information available during analysis, create a helpful dataset "README" webpage, and produce more complex metadata formats to aid dataset discovery. Metadata fields are based on the 'Schema.org' and 'Ecological Metadata Language' standards.

Maintained by Bryce Mecum. Last updated 4 years ago.

data dataset metadata schema-org unconf unconf18

1.2 match 162 stars 7.45 score 25 scripts

bioc

mastR:Markers Automated Screening Tool in R

mastR is an R package designed for automated screening of signatures of interest for specific research questions. The package is developed for generating refined lists of signature genes from multiple group comparisons based on the results from edgeR and limma differential expression (DE) analysis workflow. It also takes into account the background noise of tissue-specificity, which is often ignored by other marker generation tools. This package is particularly useful for the identification of group markers in various biological and medical applications, including cancer research and developmental biology.

Maintained by Jinjin Chen. Last updated 5 months ago.

software geneexpression transcriptomics differentialexpression visualization

1.8 match 4 stars 5.08 score 3 scripts

sportsdataverse

wehoop:Access Women's Basketball Play by Play Data

A utility for working with women's basketball data. A scraping and aggregating interface for the WNBA Stats API <https://stats.wnba.com/> and ESPN's <https://www.espn.com> women's college basketball and WNBA statistics. It provides users with the capability to access the game play-by-plays, box scores, standings and results to analyze the data for themselves.

Maintained by Saiem Gilani. Last updated 8 months ago.

college-basketball espn espn-stats ncaa ncaa-basketball professional-basketball-data sportsdataverse wnba wnba-players wnba-stats womens-basketball

1.7 match 28 stars 5.36 score 54 scripts

weiguonimh

mMARCH.AC:Processing of Accelerometry Data with 'GGIR' in mMARCH

Mobile Motor Activity Research Consortium for Health (mMARCH) is a collaborative network of studies of clinical and community samples that employ common clinical, biological, and digital mobile measures across involved studies. One of the main scientific goals of mMARCH sites is developing a better understanding of the inter-relationships between accelerometry-measured physical activity (PA), sleep (SL), and circadian rhythmicity (CR) and mental and physical health in children, adolescents, and adults. Currently, there is no consensus on a standard procedure for a data processing pipeline of raw accelerometry data, and few open-source tools to facilitate their development. The R package 'GGIR' is the most prominent open-source software package that offers great functionality and tremendous user flexibility to process raw accelerometry data. However, even with 'GGIR', processing done in a harmonized and reproducible fashion requires a non-trivial amount of expertise combined with a careful implementation. In addition, novel accelerometry-derived features of PA/SL/CR capturing multiscale, time-series, functional, distributional and other complimentary aspects of accelerometry data being constantly proposed and become available via non-GGIR R implementations. To address these issues, mMARCH developed a streamlined harmonized and reproducible pipeline for loading and cleaning raw accelerometry data, extracting features available through 'GGIR' as well as through non-GGIR R packages, implementing several data and feature quality checks, merging all features of PA/SL/CR together, and performing multiple analyses including Joint Individual Variation Explained (JIVE), an unsupervised machine learning dimension reduction technique that identifies latent factors capturing joint across and individual to each of three domains of PA/SL/CR. In detail, the pipeline generates all necessary R/Rmd/shell files for data processing after running 'GGIR' (v2.4.0) for accelerometer data. In module 1, all csv files in the 'GGIR' output directory were read, transformed and then merged. In module 2, the 'GGIR' output files were checked and summarized in one excel sheet. In module 3, the merged data was cleaned according to the number of valid hours on each night and the number of valid days for each subject. In module 4, the cleaned activity data was imputed by the average Euclidean norm minus one (ENMO) over all the valid days for each subject. Finally, a comprehensive report of data processing was created using Rmarkdown, and the report includes few exploratory plots and multiple commonly used features extracted from minute level actigraphy data. Reference: Guo W, Leroux A, Shou S, Cui L, Kang S, Strippoli MP, Preisig M, Zipunnikov V, Merikangas K (2022) Processing of accelerometry data with GGIR in Motor Activity Research Consortium for Health (mMARCH) Journal for the Measurement of Physical Behaviour, 6(1): 37-44.

Maintained by Wei Guo. Last updated 2 years ago.

openjdk

2.0 match 2 stars 4.41 score 26 scripts

paulrougieux

FAOSTAT:Download Data from the FAOSTAT Database

Download Data from the FAOSTAT Database of the Food and Agricultural Organization (FAO) of the United Nations. A list of functions to download statistics from FAOSTAT (database of the FAO <https://www.fao.org/faostat/>) and WDI (database of the World Bank <https://data.worldbank.org/>), and to perform some harmonization operations.

Maintained by Paul Rougieux. Last updated 7 months ago.

1.6 match 5.30 score 132 scripts

cran

jmuOutlier:Permutation Tests for Nonparametric Statistics

Performs a permutation test on the difference between two location parameters, a permutation correlation test, a permutation F-test, the Siegel-Tukey test, a ratio mean deviance test. Also performs some graphing techniques, such as for confidence intervals, vector addition, and Fourier analysis; and includes functions related to the Laplace (double exponential) and triangular distributions. Performs power calculations for the binomial test.

Maintained by Steven T. Garren. Last updated 6 years ago.

3.8 match 2.26 score 1 dependents

humaniverse

asylum:Data on Asylum and Resettlement for the UK

Data on Asylum and Resettlement for the UK, provided by the Home Office <https://www.gov.uk/government/statistical-data-sets/immigration-system-statistics-data-tables>.

Maintained by Matthew Gwynfryn Thomas. Last updated 17 days ago.

1.7 match 3 stars 4.99 score 36 scripts

thinkr-open

fakir:Generate Fake Datasets for Prototyping and Teaching

Create fake datasets that can be used for prototyping and teaching. This package provides a set of functions to generate fake data for a variety of data types, such as dates, addresses, and names. It can be used for prototyping (notably in 'shiny') or as a tool to teach data manipulation and data visualization.

Maintained by Colin Fay. Last updated 7 months ago.

charlatan fake-datasets golemverse hacktoberfest

1.3 match 133 stars 6.24 score 26 scripts

alisonlanski

IPEDSuploadables:Transforms Institutional Data into Text Files for IPEDS Automated Import/Upload

Starting from user-supplied institutional data, these scripts transform, aggregate, and reshape the information to produce key-value pair data files that are able to be uploaded to IPEDS (Integrated Postsecondary Education Data System) through their submission portal <https://surveys.nces.ed.gov/ipeds/>. Starting data specifications can be found in the vignettes. Final files are saved locally to a location of the user's choice. User-friendly readable files can also be produced for purposes of data review and validation.

Maintained by Alison Lanski. Last updated 3 months ago.

1.2 match 8 stars 7.05 score 39 scripts

sumanstats

phrases:Phrasal Verbs in English Club Website

Contains all phrasal verbs listed in <https://www.englishclub.com/ref/Phrasal_Verbs/> as data frame. Useful for educational purpose as well as for text mining.

Maintained by Suman Khanal. Last updated 2 years ago.

3.0 match 1 stars 2.70 score 4 scripts

jlmelville

uwot:The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality Reduction

An implementation of the Uniform Manifold Approximation and Projection dimensionality reduction by McInnes et al. (2018) <doi:10.48550/arXiv.1802.03426>. It also provides means to transform new data and to carry out supervised dimensionality reduction. An implementation of the related LargeVis method of Tang et al. (2016) <doi:10.48550/arXiv.1602.00370> is also provided. This is a complete re-implementation in R (and C++, via the 'Rcpp' package): no Python installation is required. See the uwot website (<https://github.com/jlmelville/uwot>) for more documentation and examples.

Maintained by James Melville. Last updated 20 days ago.

dimensionality-reduction umap cpp

0.5 match 328 stars 15.74 score 2.0k scripts 140 dependents

hubverse-org

hubDevs:Utilities for Creating and Standardising Hubverse Packages

What the package does (one paragraph).

Maintained by Anna Krystalli. Last updated 2 months ago.

hubverse

1.8 match 4.43 score 3 scripts

tidyverse

reprex:Prepare Reproducible Example Code via the Clipboard

Convenience wrapper that uses the 'rmarkdown' package to render small snippets of code to target formats that include both code and output. The goal is to encourage the sharing of small, reproducible, and runnable examples on code-oriented websites, such as <https://stackoverflow.com> and <https://github.com>, or in email. The user's clipboard is the default source of input code and the default target for rendered output. 'reprex' also extracts clean, runnable R code from various common formats, such as copy/paste from an R session.

Maintained by Jennifer Bryan. Last updated 6 months ago.

github reproducibility rmarkdown stackoverflow

0.5 match 744 stars 15.58 score 498 scripts 127 dependents

theeliteanalyst

Riex:IEX Stocks and Market Data

Retrieves efficiently and reliably Investors Exchange ('IEX') stock and market data using 'IEX Cloud API'. The platform is offered by Investors Exchange Group (IEX Group). Main goal is to leverage 'R' capabilities including existing packages to effectively provide financial and statistical analysis as well as visualization in support of fact-based decisions. In addition, continuously improve and enhance 'Riex' by applying best practices and being in tune with users' feedback and requirements. Please, make sure to review and acknowledge Investors Exchange Group (IEX Group) terms and conditions before using 'Riex' (<https://iexcloud.io/terms/>).

Maintained by Myriam Ibrahim. Last updated 4 years ago.

finance financial-analysis financial-data iex iex-api iexcloud

1.6 match 9 stars 4.69 score 11 scripts

danielkovtun

rpredictit:Interface to the 'PredictIt' API

Wrapper to retrieve market data, explore available markets, and plot historical price data from the 'PredictIt' public API (<https://www.predictit.org/api/marketdata/all/>). The package comes with a demo 'shiny' application for illustrating example use cases. License to use data made available via the API is for non-commercial use and 'PredictIt' is the sole source of such data.

Maintained by Daniel Kovtun. Last updated 3 years ago.

1.7 match 4 stars 4.30 score 8 scripts

thinkr-open

papillon:Build And Highlight Package Documentation With Customized Templates

Helps creating company visual identity. Build your templates for your package vignettes, reports with {bookdown}, package presentation with {pkgdown}. Highlight your documentation in your projects. Allow for code folding.

Maintained by Sébastien Rochette. Last updated 2 years ago.

1.7 match 11 stars 4.34 score 4 scripts

bioc

pgxRpi:R wrapper for Progenetix

The package is an R wrapper for Progenetix REST API built upon the Beacon v2 protocol. Its purpose is to provide a seamless way for retrieving genomic data from Progenetix database—an open resource dedicated to curated oncogenomic profiles. Empowered by this package, users can effortlessly access and visualize data from Progenetix.

Maintained by Hangjia Zhao. Last updated 13 days ago.

copynumbervariation genomicvariation dataimport software

1.2 match 3 stars 5.95 score 6 scripts

rmi-pacta

pacta.data.scraping:Scrapes data from various web sources needed for PACTA

This package provides tools to scrape data from various web sources needed for PACTA.

Maintained by CJ Yetman. Last updated 5 months ago.

climate-change pacta pactaverse sustainable-finance

1.8 match 2 stars 3.89 score 3 scripts 1 dependents

business-science

tidyquant:Tidy Quantitative Financial Analysis

Bringing business and financial analysis to the 'tidyverse'. The 'tidyquant' package provides a convenient wrapper to various 'xts', 'zoo', 'quantmod', 'TTR' and 'PerformanceAnalytics' package functions and returns the objects in the tidy 'tibble' format. The main advantage is being able to use quantitative functions with the 'tidyverse' functions including 'purrr', 'dplyr', 'tidyr', 'ggplot2', 'lubridate', etc. See the 'tidyquant' website for more information, documentation and examples.

Maintained by Matt Dancho. Last updated 1 months ago.

dplyr financial-analysis financial-data financial-statements multiple-stocks performance-analysis performanceanalytics quantmod stock stock-exchanges stock-indexes stock-lists stock-performance stock-prices stock-symbol tidyverse time-series timeseries xts

0.5 match 872 stars 13.34 score 5.2k scripts

alex-danilin

serpstatr:'Serpstat' API Wrapper

The primary goal of 'Serpstat' API <https://serpstat.com/api/> is to reduce manual SEO (search engine optimization) and PPC (pay-per-click) tasks. You can automate your keywords research or competitors analysis with this API wrapper.

Maintained by Alex Danilin. Last updated 7 months ago.

4.0 match 1.70 score 2 scripts

bioc

MSstatsQC:Longitudinal system suitability monitoring and quality control for proteomic experiments

MSstatsQC is an R package which provides longitudinal system suitability monitoring and quality control tools for proteomic experiments.

Maintained by Eralp Dogu. Last updated 5 months ago.

software qualitycontrol proteomics massspectrometry

1.5 match 4.48 score 7 scripts 1 dependents

edonnachie

ICD10gm:Metadata Processing for the German Modification of the ICD-10 Coding System

Provides convenient access to the German modification of the International Classification of Diagnoses, 10th revision (ICD-10-GM). It provides functionality to aid in the identification, specification and historisation of ICD-10 codes. Its intended use is the analysis of routinely collected data in the context of epidemiology, medical research and health services research. The underlying metadata are released by the German Institute for Medical Documentation and Information <https://www.dimdi.de>, and are redistributed in accordance with their license.

Maintained by Ewan Donnachie. Last updated 1 years ago.

bfarm charlson comorbidities diagnoses dimdi icd-10 metadata routinedaten versorgungsforschung

1.3 match 10 stars 5.30 score 20 scripts

petrbouchal

ispv:Use Czech labour market survey data

Retrieve and load data from the Czech Information System on Average Earnings (ISPV) at <https://www.ispv.cz>.

Maintained by Petr Bouchal. Last updated 9 months ago.

3.3 match 2 stars 2.00 score 5 scripts

visbanking

fdicdata:Accessing FDIC Bank Data

A system provides a set of functions for working with data from the Federal Deposit Insurance Corporation (FDIC), including retrieving financial data for FDIC-insured institutions and accessing the data taxonomy.

Maintained by Ugur Dar. Last updated 2 years ago.

1.8 match 9 stars 3.65 score 3 scripts

luizesser

chooseGCM:Selecting General Circulation Models for Species Distribution Modeling

Methods to help selecting General Circulation Models (GCMs) in the context of projecting models to future scenarios. It is provided clusterization algorithms, distance and correlation metrics, as well as a tailor-made algorithm to detect the optimum subset of GCMs that recreate the environment of all GCMs as proposed in Esser et al. (2025) <doi:10.1111/gcb.70008>.

Maintained by Luíz Esser. Last updated 19 days ago.

1.1 match 8 stars 6.23 score 5 scripts

rmi-pacta

pacta.portfolio.audit:Functions for Calculating Audit Statistics for PACTA on Capital Transition Monitor

These utils include functions that facilitate calculation of useful audit statistics for PACTA on Capital Transition Monitor.

Maintained by CJ Yetman. Last updated 3 months ago.

climate-change pacta pactaverse sustainable-finance

1.8 match 1 stars 3.71 score 5 scripts 1 dependents

greta-dev

greta:Simple and Scalable Statistical Modelling in R

Write statistical models in R and fit them by MCMC and optimisation on CPUs and GPUs, using Google 'TensorFlow'. greta lets you write your own model like in BUGS, JAGS and Stan, except that you write models right in R, it scales well to massive datasets, and it’s easy to extend and build on. See the website for more information, including tutorials, examples, package documentation, and the greta forum.

Maintained by Nicholas Tierney. Last updated 6 days ago.

0.5 match 566 stars 12.53 score 396 scripts 6 dependents

javanderwal

readapra:Download and Tidy Data from the Australian Prudential Regulation Authority

Download the latest data from the Australian Prudential Regulation Authority <https://www.apra.gov.au/> and import it into R as a tidy data frame.

Maintained by Jarrod van der Wal. Last updated 22 days ago.

1.8 match 3.65 score

chuxinyuan

ipkg:Install R Packages or Download File from GitHub via the Proxy Site

When you want to install R package or download file from GitHub, but you can't access GitHub, this package helps you install R packages or download file from GitHub via the proxy website <https://gh-proxy.com/> or <https://ghfast.top/>, which is in real-time sync with GitHub.

Maintained by Xinyuan Chu. Last updated 17 days ago.

2.3 match 2.70 score

sanfordweisberg

alr4:Data to Accompany Applied Linear Regression 4th Edition

Datasets to Accompany S. Weisberg (2014, ISBN: 978-1-118-38608-8), "Applied Linear Regression," 4th edition. Many data files in this package are included in the `alr3` package as well, so only one of them should be used.

Maintained by Sanford Weisberg. Last updated 7 years ago.

1.8 match 1 stars 3.45 score 306 scripts

oscarperpinan

rasterVis:Visualization Methods for Raster Data

Methods for enhanced visualization and interaction with raster data. It implements visualization methods for quantitative data and categorical data, both for univariate and multivariate rasters. It also provides methods to display spatiotemporal rasters, and vector fields. See the website for examples.

Maintained by Oscar Perpinan Lamigueiro. Last updated 12 months ago.

0.5 match 85 stars 11.74 score 4.2k scripts 13 dependents

ljvillanueva

pumilioR:Pumilio in R

R package to query and get data out of a Pumilio sound archive system (http://ljvillanueva.github.io/pumilio/).

Maintained by Luis J. Villanueva-Rivera. Last updated 11 years ago.

1.5 match 2 stars 4.00 score 7 scripts

bioc

MSstatsQCgui:A graphical user interface for MSstatsQC package

MSstatsQCgui is a Shiny app which provides longitudinal system suitability monitoring and quality control tools for proteomic experiments.

Maintained by Eralp Dogu. Last updated 5 months ago.

software qualitycontrol proteomics massspectrometry gui

1.5 match 4.00 score 1 scripts

nenuial

geovizr:Support for Knitr (Quarto/Rmd)

Provide support functions for Quarto and Rmd documents.

Maintained by Pascal Burkhard. Last updated 23 days ago.

2.3 match 2.60 score 3 scripts

ropensci

drake:A Pipeline Toolkit for Reproducible Computation at Scale

A general-purpose computational engine for data analysis, drake rebuilds intermediate data objects when their dependencies change, and it skips work when the results are already up to date. Not every execution starts from scratch, there is native support for parallel and distributed computing, and completed projects have tangible evidence that they are reproducible. Extensive documentation, from beginner-friendly tutorials to practical examples and more, is available at the reference website <https://docs.ropensci.org/drake/> and the online manual <https://books.ropensci.org/drake/>.

Maintained by William Michael Landau. Last updated 3 months ago.

data-science drake high-performance-computing makefile peer-reviewed pipeline reproducibility reproducible-research ropensci workflow

0.5 match 1.3k stars 11.49 score 1.7k scripts 1 dependents

b-cubed-eu

impIndicator:Impact Indicators of Alien Taxa

Compute impact indicators of alien taxa using GBIF occurrence cube and EICAT assessment of alien species. Aggregates species impact of various scores due to mecahnism. Aggregates site impact of various scores due to species.

Maintained by Mukhtar Muhammed Yahaya. Last updated 10 hours ago.

biodiversity-indicators impact invasive-species

1.3 match 4.38 score 4 scripts

kwstat

agridat:Agricultural Datasets

Datasets from books, papers, and websites related to agriculture. Example graphics and analyses are included. Data come from small-plot trials, multi-environment trials, uniformity trials, yield monitors, and more.

Maintained by Kevin Wright. Last updated 28 days ago.

data

0.5 match 125 stars 11.02 score 1.7k scripts 2 dependents

rudeboybert

fivethirtyeight:Data and Code Behind the Stories and Interactives at 'FiveThirtyEight'

Datasets and code published by the data journalism website 'FiveThirtyEight' available at <https://github.com/fivethirtyeight/data>. Note that while we received guidance from editors at 'FiveThirtyEight', this package is not officially published by 'FiveThirtyEight'.

Maintained by Albert Y. Kim. Last updated 2 years ago.

data-science datajournalism fivethirtyeight statistics

0.5 match 453 stars 10.98 score 1.7k scripts

bioc

XINA:Multiplexes Isobaric Mass Tagged-based Kinetics Data for Network Analysis

The aim of XINA is to determine which proteins exhibit similar patterns within and across experimental conditions, since proteins with co-abundance patterns may have common molecular functions. XINA imports multiple datasets, tags dataset in silico, and combines the data for subsequent subgrouping into multiple clusters. The result is a single output depicting the variation across all conditions. XINA, not only extracts coabundance profiles within and across experiments, but also incorporates protein-protein interaction databases and integrative resources such as KEGG to infer interactors and molecular functions, respectively, and produces intuitive graphical outputs.

Maintained by Lang Ho Lee. Last updated 5 months ago.

systemsbiology proteomics rnaseq network

1.3 match 4.30 score 3 scripts

jamiemkass

ENMeval:Automated Tuning and Evaluations of Ecological Niche Models

Runs ecological niche models over all combinations of user-defined settings (i.e., tuning), performs cross validation to evaluate models, and returns data tables to aid in selection of optimal model settings that balance goodness-of-fit and model complexity. Also has functions to partition data spatially (or not) for cross validation, to plot multiple visualizations of results, to run null models to estimate significance and effect sizes of performance metrics, and to calculate range overlap between model predictions, among others. The package was originally built for Maxent models (Phillips et al. 2006, Phillips et al. 2017), but the current version allows possible extensions for any modeling algorithm. The extensive vignette, which guides users through most package functionality but unfortunately has a file size too big for CRAN, can be found here on the package's Github Pages website: <https://jamiemkass.github.io/ENMeval/articles/ENMeval-2.0-vignette.html>.

Maintained by Jamie M. Kass. Last updated 2 months ago.

0.5 match 49 stars 11.25 score 332 scripts 2 dependents

indecis-project

INQC:Quality Control of Climatological Daily Time Series

Collection of functions for quality control (QC) of climatological daily time series (e.g. the ECA&D station data).

Maintained by Enric Aguilar. Last updated 4 years ago.

1.7 match 4 stars 3.30 score 1 scripts

njtierney

ozroaddeaths:Pulls Data From Australian Road Deaths Database

ozroaddeaths is a package that pulls data from the Australian Road Deaths Database, run by the Bureau of Infrastructure, Transport and Regional Economics (BITRE). This provides basic details of road transport crash fatalities in Australia as reported by the police each month to the State and Territory road safety authorities. The details provided in the database fall into two groups: 1) the circumstances of the crash, for example, date, location, crash type some details regarding the persons killed, for example, age, gender and road user group.

Maintained by Nicholas Tierney. Last updated 5 months ago.

ozunconf17 unconf

1.2 match 6 stars 4.62 score 7 scripts

shinyworks

cookies:Use Browser Cookies with 'shiny'

Browser cookies are name-value pairs that are saved in a user's browser by a website. Cookies allow websites to persist information about the user and their use of the website. Here we provide tools for working with cookies in 'shiny' apps, in part by wrapping the 'js-cookie' JavaScript library <https://github.com/js-cookie/js-cookie>.

Maintained by Jon Harmon. Last updated 4 months ago.

0.9 match 33 stars 5.71 score 26 scripts 2 dependents

bioc

iCNV:Integrated Copy Number Variation detection

Integrative copy number variation (CNV) detection from multiple platform and experimental design.

Maintained by Zilu Zhou. Last updated 5 months ago.

immunooncology exomeseq wholegenome snp copynumbervariation hiddenmarkovmodel

1.3 match 4.30 score 5 scripts

yihui

litedown:A Lightweight Version of R Markdown

Render R Markdown to Markdown (without using 'knitr'), and Markdown to lightweight HTML or 'LaTeX' documents with the 'commonmark' package (instead of 'Pandoc'). Some missing Markdown features in 'commonmark' are also supported, such as raw HTML or 'LaTeX' blocks, 'LaTeX' math, superscripts, subscripts, footnotes, element attributes, and appendices, but not all 'Pandoc' Markdown features are (or will be) supported. With additional JavaScript and CSS, you can also create HTML slides and articles. This package can be viewed as a trimmed-down version of R Markdown and 'knitr'. It does not aim at rich Markdown features or a large variety of output formats (the primary formats are HTML and 'LaTeX'). Book and website projects of multiple input documents are also supported.

Maintained by Yihui Xie. Last updated 2 days ago.

litedown markdown r-markdown report-generator reproducible-research

0.5 match 197 stars 10.44 score 16 scripts 3 dependents

jbdorey

BeeBDC:Occurrence Data Cleaning

Flags and checks occurrence data that are in Darwin Core format. The package includes generic functions and data as well as some that are specific to bees. This package is meant to build upon and be complimentary to other excellent occurrence cleaning packages, including 'bdc' and 'CoordinateCleaner'. This package uses datasets from several sources and particularly from the Discover Life Website, created by Ascher and Pickering (2020). For further information, please see the original publication and package website. Publication - Dorey et al. (2023) <doi:10.1101/2023.06.30.547152> and package website - Dorey et al. (2023) <https://github.com/jbdorey/BeeBDC>.

Maintained by James B. Dorey. Last updated 4 months ago.

0.9 match 3 stars 5.68 score 7 scripts

opencpu

opencpu:Producing and Reproducing Results

A system for embedded scientific computing and reproducible research with R. The OpenCPU server exposes a simple but powerful HTTP api for RPC and data interchange with R. This provides a reliable and scalable foundation for statistical services or building R web applications. The OpenCPU server runs either as a single-user development server within the interactive R session, or as a multi-user Linux stack based on Apache2. The entire system is fully open source and permissively licensed. The OpenCPU website has detailed documentation and example apps.

Maintained by Jeroen Ooms. Last updated 5 months ago.

0.5 match 733 stars 10.17 score 168 scripts 2 dependents

curious-joe

pell:Data About Historic Pell Grant Distribution in the US

Historic Pell grant data as provided by the US Department of Education. This package contains data about how much pell grant was awarded by which institution in which year. This data comes from the US Department of Education. Raw data can be downloaded from here: <https://www2.ed.gov/finaid/prof/resources/data/pell-institution.html>.

Maintained by Arafath Hossain. Last updated 2 years ago.

1.2 match 4.30 score 7 scripts

cjendres1

nhanesA:NHANES Data Retrieval

Utility to retrieve data from the National Health and Nutrition Examination Survey (NHANES) website <https://www.cdc.gov/nchs/nhanes/>.

Maintained by Christopher Endres. Last updated 2 months ago.

nhanes

0.5 match 59 stars 9.37 score 239 scripts

ropensci

lingtypology:Linguistic Typology and Mapping

Provides R with the Glottolog database <https://glottolog.org/> and some more abilities for purposes of linguistic mapping. The Glottolog database contains the catalogue of languages of the world. This package helps researchers to make a linguistic maps, using philosophy of the Cross-Linguistic Linked Data project <https://clld.org/>, which allows for while at the same time facilitating uniform access to the data across publications. A tutorial for this package is available on GitHub pages <https://docs.ropensci.org/lingtypology/> and package vignette. Maps created by this package can be used both for the investigation and linguistic teaching. In addition, package provides an ability to download data from typological databases such as WALS, AUTOTYP and some others and to create your own database website.

Maintained by George Moroz. Last updated 5 months ago.

abvd afbo atlas autotype bivaltyp clld glottolog-database linguistic-maps linguistics phoible sails typology wals

0.5 match 51 stars 9.58 score 694 scripts

eddelbuettel

random:True Random Numbers using RANDOM.ORG

The true random number service provided by the RANDOM.ORG website created by Mads Haahr samples atmospheric noise via radio tuned to an unused broadcasting frequency together with a skew correction algorithm due to John von Neumann. More background is available in the included vignette based on an essay by Mads Haahr. In its current form, the package offers functions to retrieve random integers, randomized sequences and random strings.

Maintained by Dirk Eddelbuettel. Last updated 29 days ago.

random-number-generators

0.5 match 9 stars 9.47 score 1.4k scripts 2 dependents

dmi3kno

polite:Be Nice on the Web

Be responsible when scraping data from websites by following polite principles: introduce yourself, ask for permission, take slowly and never ask twice.

Maintained by Dmytro Perepolkin. Last updated 2 years ago.

crawler memoise rate-limiter robotstxt rvest scraper webscraping

0.5 match 327 stars 8.98 score 596 scripts 5 dependents

stevenmmortimer

salesforcer:An Implementation of 'Salesforce' APIs Using Tidy Principles

Functions connecting to the 'Salesforce' Platform APIs (REST, SOAP, Bulk 1.0, Bulk 2.0, Metadata, Reports and Dashboards) <https://trailhead.salesforce.com/content/learn/modules/api_basics/api_basics_overview>. "API" is an acronym for "application programming interface". Most all calls from these APIs are supported as they use CSV, XML or JSON data that can be parsed into R data structures. For more details please see the 'Salesforce' API documentation and this package's website <https://stevenmmortimer.github.io/salesforcer/> for more information, documentation, and examples.

Maintained by Steven M. Mortimer. Last updated 4 months ago.

api-wrappers r-language r-programming salesforce salesforce-apis

0.5 match 82 stars 9.27 score 191 scripts

ropensci

stats19:Work with Open Road Traffic Casualty Data from Great Britain

Tools to help download, process and analyse the UK road collision data collected using the 'STATS19' form. The datasets are provided as 'CSV' files with detailed road safety information about the circumstances of car crashes and other incidents on the roads resulting in casualties in Great Britain from 1979 to present. Tables are available on 'colissions' with the circumstances (e.g. speed limit of road), information about 'vehicles' involved (e.g. type of vehicle), and 'casualties' (e.g. age). The statistics relate only to events on public roads that were reported to the police, and subsequently recorded, using the 'STATS19' collision reporting form. See the Department for Transport website <https://www.data.gov.uk/dataset/cb7ae6f0-4be6-4935-9277-47e5ce24a11f/road-accidents-safety-data> for more information on these datasets. The package is described in a paper in the Journal of Open Source Software (Lovelace et al. 2019) <doi:10.21105/joss.01181>. See Gilardi et al. (2022) <doi:10.1111/rssa.12823>, Vidal-Tortosa et al. (2021) <doi:10.1016/j.jth.2021.101291>, and Tait et al. (2023) <doi:10.1016/j.aap.2022.106895> for examples of how the data can be used for methodological and empirical road safety research.

Maintained by Robin Lovelace. Last updated 2 months ago.

stats19 road-safety transport car-crashes ropensci data

0.5 match 64 stars 9.20 score 193 scripts

azure

azuremlsdk:Interface to the 'Azure Machine Learning' 'SDK'

Interface to the 'Azure Machine Learning' Software Development Kit ('SDK'). Data scientists can use the 'SDK' to train, deploy, automate, and manage machine learning models on the 'Azure Machine Learning' service. To learn more about 'Azure Machine Learning' visit the website: <https://docs.microsoft.com/en-us/azure/machine-learning/service/overview-what-is-azure-ml>.

Maintained by Diondra Peck. Last updated 3 years ago.

amlcompute azure azure-machine-learning azureml dsi machine-learning rstudio sdk-r

0.5 match 106 stars 8.91 score 221 scripts

cran

BAwiR:Analysis of Basketball Data

Collection of tools to work with European basketball data. Functions available are related to friendly web scraping, data management and visualization. Data were obtained from <https://www.euroleaguebasketball.net/euroleague/>, <https://www.euroleaguebasketball.net/eurocup/> and <https://www.acb.com/>, following the instructions of their respectives robots.txt files, when available. Box score data are available for the three leagues. Play-by-play data are also available for the Spanish league. Methods for analysis include a population pyramid, 2D plots, circular plots of players' percentiles, plots of players' monthly/yearly stats, team heatmaps, team shooting plots, team four factors plots, cross-tables with the results of regular season games, maps of nationalities, combinations of lineups, possessions-related variables, timeouts, performance by periods, personal fouls and offensive rebounds. Please see Vinue (2020) <doi:10.1089/big.2018.0124> and Vinue (2024) <doi:10.1089/big.2023.0177>.

Maintained by Guillermo Vinue. Last updated 30 days ago.

1.8 match 1 stars 2.60 score

bioc

CINdex:Chromosome Instability Index

The CINdex package addresses important area of high-throughput genomic analysis. It allows the automated processing and analysis of the experimental DNA copy number data generated by Affymetrix SNP 6.0 arrays or similar high throughput technologies. It calculates the chromosome instability (CIN) index that allows to quantitatively characterize genome-wide DNA copy number alterations as a measure of chromosomal instability. This package calculates not only overall genomic instability, but also instability in terms of copy number gains and losses separately at the chromosome and cytoband level.

Maintained by Yuriy Gusev. Last updated 5 months ago.

software copynumbervariation genomicvariation acgh microarray genetics sequencing

1.1 match 4.08 score 2 scripts

mrmaxent

maxnet:Fitting 'Maxent' Species Distribution Models with 'glmnet'

Procedures to fit species distributions models from occurrence records and environmental variables, using 'glmnet' for model fitting. Model structure is the same as for the 'Maxent' Java package, version 3.4.0, with the same feature types and regularization options. See the 'Maxent' website <http://biodiversityinformatics.amnh.org/open_source/maxent> for more details.

Maintained by Steven Phillips. Last updated 2 years ago.

0.5 match 75 stars 8.68 score 169 scripts 7 dependents

kcuilla

reactablefmtr:Streamlined Table Styling and Formatting for Reactable

Provides various features to streamline and enhance the styling of interactive reactable tables with easy-to-use and highly-customizable functions and themes. Apply conditional formatting to cells with data bars, color scales, color tiles, and icon sets. Utilize custom table themes inspired by popular websites such and bootstrap themes. Apply sparkline line & bar charts (note this feature requires the 'dataui' package which can be downloaded from <https://github.com/timelyportfolio/dataui>). Increase the portability and reproducibility of reactable tables by embedding images from the web directly into cells. Save the final table output as a static image or interactive file.

Maintained by Kyle Cuilla. Last updated 2 years ago.

customization data-visualization easy-to-use reproducible tables

0.5 match 209 stars 8.79 score 460 scripts 4 dependents

jemus42

poddr:Collect Metadata for Selected Podcasts

Collecting all the data, but just for The Incomparable, Relay.fm and ATP.

Maintained by Lukas Burk. Last updated 15 days ago.

1.8 match 1 stars 2.54 score 6 scripts

computationalstylistics

stylo:Stylometric Multivariate Analyses

Supervised and unsupervised multivariate methods, supplemented by GUI and some visualizations, to perform various analyses in the field of computational stylistics, authorship attribution, etc. For further reference, see Eder et al. (2016), <https://journal.r-project.org/archive/2016/RJ-2016-007/index.html>. You are also encouraged to visit the Computational Stylistics Group's website <https://computationalstylistics.github.io/>, where a reasonable amount of information about the package and related projects are provided.

Maintained by Maciej Eder. Last updated 2 months ago.

0.5 match 187 stars 8.58 score 462 scripts

dirkschumacher

ompr:Model and Solve Mixed Integer Linear Programs

Model mixed integer linear programs in an algebraic way directly in R. The model is solver-independent and thus offers the possibility to solve a model with different solvers. It currently only supports linear constraints and objective functions. See the 'ompr' website <https://dirkschumacher.github.io/ompr/> for more information, documentation and examples.

Maintained by Dirk Schumacher. Last updated 2 years ago.

integer-programming linear-programming milp mip optimization

0.5 match 268 stars 8.33 score 321 scripts 6 dependents

ropensci

weathercan:Download Weather Data from Environment and Climate Change Canada

Provides means for downloading historical weather data from the Environment and Climate Change Canada website (<https://climate.weather.gc.ca/historical_data/search_historic_data_e.html>). Data can be downloaded from multiple stations and over large date ranges and automatically processed into a single dataset. Tools are also provided to identify stations either by name or proximity to a location.

Maintained by Steffi LaZerte. Last updated 11 days ago.

environment-canada peer-reviewed weather-data weather-downloader

0.5 match 107 stars 8.33 score 189 scripts

ropensci

rinat:Access 'iNaturalist' Data Through APIs

A programmatic interface to the API provided by the 'iNaturalist' website <https://www.inaturalist.org/> to download species occurrence data submitted by citizen scientists.

Maintained by Stéphane Guillou. Last updated 3 years ago.

inaturalist spocc

0.5 match 56 stars 8.06 score 213 scripts

snoweye

phyclust:Phylogenetic Clustering (Phyloclustering)

Phylogenetic clustering (phyloclustering) is an evolutionary Continuous Time Markov Chain model-based approach to identify population structure from molecular data without assuming linkage equilibrium. The package phyclust (Chen 2011) provides a convenient implementation of phyloclustering for DNA and SNP data, capable of clustering individuals into subpopulations and identifying molecular sequences representative of those subpopulations. It is designed in C for performance, interfaced with R for visualization, and incorporates other popular open source programs including ms (Hudson 2002) <doi:10.1093/bioinformatics/18.2.337>, seq-gen (Rambaut and Grassly 1997) <doi:10.1093/bioinformatics/13.3.235>, Hap-Clustering (Tzeng 2005) <doi:10.1002/gepi.20063> and PAML baseml (Yang 1997, 2007) <doi:10.1093/bioinformatics/13.5.555>, <doi:10.1093/molbev/msm088>, for simulating data, additional analyses, and searching the best tree. See the phyclust website for more information, documentations and examples.

Maintained by Wei-Chen Chen. Last updated 2 years ago.

0.5 match 9 stars 8.45 score 126 scripts 8 dependents

wallaceecomod

wallace:A Modular Platform for Reproducible Modeling of Species Niches and Distributions

The 'shiny' application Wallace is a modular platform for reproducible modeling of species niches and distributions. Wallace guides users through a complete analysis, from the acquisition of species occurrence and environmental data to visualizing model predictions on an interactive map, thus bundling complex workflows into a single, streamlined interface. An extensive vignette, which guides users through most package functionality can be found on the package's GitHub Pages website: <https://wallaceecomod.github.io/wallace/articles/tutorial-v2.html>.

Maintained by Mary E. Blair. Last updated 9 days ago.

openjdk

0.5 match 133 stars 8.36 score 96 scripts

adeelk93

collapsibleTree:Interactive Collapsible Tree Diagrams using 'D3.js'

Interactive Reingold-Tilford tree diagrams created using 'D3.js', where every node can be expanded and collapsed by clicking on it. Tooltips and color gradients can be mapped to nodes using a numeric column in the source data frame. See 'collapsibleTree' website for more information and examples.

Maintained by Adeel Khan. Last updated 1 years ago.

d3js htmlwidgets shiny

0.5 match 159 stars 8.25 score 472 scripts 6 dependents

ropensci

gistr:Work with 'GitHub' 'Gists'

Work with 'GitHub' 'gists' from 'R' (e.g., <https://en.wikipedia.org/wiki/GitHub#Gist>, <https://docs.github.com/en/github/writing-on-github/creating-gists/>). A 'gist' is simply one or more files with code/text/images/etc. This package allows the user to create new 'gists', update 'gists' with new files, rename files, delete files, get and delete 'gists', star and 'un-star' 'gists', fork 'gists', open a 'gist' in your default browser, get embed code for a 'gist', list 'gist' 'commits', and get rate limit information when 'authenticated'. Some requests require authentication and some do not. 'Gists' website: <https://gist.github.com/>.

Maintained by Scott Chamberlain. Last updated 2 years ago.

http https api web-services github github api gist gists code script snippet api-wrapper github-api github-gist

0.5 match 104 stars 8.30 score 42 scripts 2 dependents

ropensci

wateRinfo:Download Time Series Data from Waterinfo.be

wateRinfo facilitates access to waterinfo.be (<https://www.waterinfo.be>), a website managed by the Flanders Environment Agency (VMM) and Flanders Hydraulics Research. The website provides access to real-time water and weather related environmental variables for Flanders (Belgium), such as rainfall, air pressure, discharge, and water level. The package provides functions to search for stations and variables, and download time series.

Maintained by Stijn Van Hoey. Last updated 3 years ago.

api climate lifewatch open-science oscibio ropensci water weather

0.8 match 14 stars 5.36 score 27 scripts

vinhdizzo

DisImpact:Calculates Disproportionate Impact When Binary Success Data are Disaggregated by Subgroups

Implements methods for calculating disproportionate impact: the percentage point gap, proportionality index, and the 80% index. California Community Colleges Chancellor's Office (2017). Percentage Point Gap Method. <https://www.cccco.edu/-/media/CCCCO-Website/About-Us/Divisions/Digital-Innovation-and-Infrastructure/Research/Files/PercentagePointGapMethod2017.ashx>. California Community Colleges Chancellor's Office (2014). Guidelines for Measuring Disproportionate Impact in Equity Plans. <https://www.cccco.edu/-/media/CCCCO-Website/Files/DII/guidelines-for-measuring-disproportionate-impact-in-equity-plans-tfa-ada.pdf>.

Maintained by Vinh Nguyen. Last updated 2 years ago.

0.8 match 2 stars 5.41 score 17 scripts 1 dependents

dipterix

threeBrain:Your Advanced 3D Brain Visualization

A fast, interactive cross-platform, and easy to share 'WebGL'-based 3D brain viewer that visualizes 'FreeSurfer' and/or 'AFNI/SUMA' surfaces. The viewer widget can be either standalone or embedded into 'R-shiny' applications. The standalone version only require a web browser with 'WebGL2' support (for example, 'Chrome', 'Firefox', 'Safari'), and can be inserted into any websites. The 'R-shiny' support allows the 3D viewer to be dynamically generated from reactive user inputs. Please check the publication by Wang, Magnotti, Zhang, and Beauchamp (2023, <doi:10.1523/ENEURO.0328-23.2023>) for electrode localization. This viewer has been fully adopted by 'RAVE' <https://rave.wiki>, an interactive toolbox to analyze 'iEEG' data by Magnotti, Wang, and Beauchamp (2020, <doi:10.1016/j.neuroimage.2020.117341>). Please check citation("threeBrain") for details.

Maintained by Zhengjia Wang. Last updated 2 days ago.

brain ecog electroencephalography ieeg localization mri-brain neuroimaging template-brains

0.5 match 44 stars 8.24 score 38 scripts 1 dependents

uptake

pkgnet:Get Network Representation of an R Package

Tools from the domain of graph theory can be used to quantify the complexity and vulnerability to failure of a software package. That is the guiding philosophy of this package. 'pkgnet' provides tools to analyze the dependencies between functions in an R package and between its imported packages. See the pkgnet website for vignettes and other supplementary information.

Maintained by Brian Burns. Last updated 10 months ago.

code-quality dependency-analysis dependency-graph graph-theory

0.5 match 160 stars 7.91 score 86 scripts

hturner

PlackettLuce:Plackett-Luce Models for Rankings

Functions to prepare rankings data and fit the Plackett-Luce model jointly attributed to Plackett (1975) <doi:10.2307/2346567> and Luce (1959, ISBN:0486441369). The standard Plackett-Luce model is generalized to accommodate ties of any order in the ranking. Partial rankings, in which only a subset of items are ranked in each ranking, are also accommodated in the implementation. Disconnected/weakly connected networks implied by the rankings may be handled by adding pseudo-rankings with a hypothetical item. Optionally, a multivariate normal prior may be set on the log-worth parameters and ranker reliabilities may be incorporated as proposed by Raman and Joachims (2014) <doi:10.1145/2623330.2623654>. Maximum a posteriori estimation is used when priors are set. Methods are provided to estimate standard errors or quasi-standard errors for inference as well as to fit Plackett-Luce trees. See the package website or vignette for further details.

Maintained by Heather Turner. Last updated 2 years ago.

plackett-luce-models preferences ranking rankings-data statistical-models

0.5 match 20 stars 7.97 score 86 scripts 3 dependents

bjw34032

waveslim:Basic Wavelet Routines for One-, Two-, and Three-Dimensional Signal Processing

Basic wavelet routines for time series (1D), image (2D) and array (3D) analysis. The code provided here is based on wavelet methodology developed in Percival and Walden (2000); Gencay, Selcuk and Whitcher (2001); the dual-tree complex wavelet transform (DTCWT) from Kingsbury (1999, 2001) as implemented by Selesnick; and Hilbert wavelet pairs (Selesnick 2001, 2002). All figures in chapters 4-7 of GSW (2001) are reproducible using this package and R code available at the book website(s) below.

Maintained by Brandon Whitcher. Last updated 10 months ago.

wavelets

0.5 match 3 stars 7.88 score 108 scripts 23 dependents

schlosslab

mikropml:User-Friendly R Package for Supervised Machine Learning Pipelines

An interface to build machine learning models for classification and regression problems. 'mikropml' implements the ML pipeline described by Topçuoğlu et al. (2020) <doi:10.1128/mBio.00434-20> with reasonable default options for data preprocessing, hyperparameter tuning, cross-validation, testing, model evaluation, and interpretation steps. See the website <https://www.schlosslab.org/mikropml/> for more information, documentation, and examples.

Maintained by Kelly Sovacool. Last updated 2 years ago.

machine-learning

0.5 match 56 stars 7.83 score 86 scripts