| abseil | Extensions to the C++ standard library | libabsl-dev
| bigrquerystorage bigrquerystorage |
|---|
| alsa-lib | Shared library for ALSA applications | libasound2-dev
| harmonium |
|---|
| apparmor | Changehat AppArmor library | libapparmor-dev
| RAppArmor RAppArmor unix unix |
|---|
| arpack | Fortran77 subroutines to solve large scale eigenvalue problems | libarpack2-dev
| birp rlibkriging rlibkriging speakeasyR speakeasyR |
|---|
| atkmm | C++ wrappers for ATK accessibility toolkit | libatkmm-1.6-dev
| HilbertVisGUI |
|---|
| bzip2 | High-quality block-sorting file compressor library | libbz2-dev
| bamsignals csaw deepSNV DiffBind diffHic epialleleR FLAMES GMMAT GMMAT h5vc iscream jackalope jackalope maftools methylKit mitoClone2 podkat QuasR raer Rhtslib Rsamtools scPipe seqminer seqminer SingleMoleculeGenomicsIO VariantAnnotation vcfppR vcfppR |
|---|
| c-blosc | High performance meta-compressor optimized for binary data | libblosc-dev
| blosc blosc Rarr Rarr Rarr |
|---|
| cairo | Cairo 2D vector graphics library | libcairo2-dev
| Cairo Cairo gdtools gdtools mypaintr rsvg rsvg unigd unigd |
|---|
| cln | Class Library for Numbers | libcln-dev
| finitization |
|---|
| clp | Coin-or linear programming solver | coinor-libclp-dev
| coinclp coinclp pcaL1 |
|---|
| coinor-symphony | COIN-OR solver for mixed-integer linear programs | coinor-libsymphony-dev
| lpsymphony Rsymphony Rsymphony |
|---|
| curl | Easy-to-use client-side URL transfer library | libcurl4-openssl-dev
| alabaster.base arrow arrow bamsignals beachmat.hdf5 BigDataStatMeth chihaya cozip cpp11bigwig cpp11bigwig csaw curl curl CytoML deepSNV DiffBind diffHic DropletUtils epialleleR epigraHMM FLAMES flowCore flowWorkspace gdscloud GenomicDataStream h5mread h5vc iscream jackalope jackalope maftools methylclock methylKit mgcca mitoClone2 mRpostman mRpostman mzR ncdfFlow ondisc ondisc otelsdk otelsdk podkat QuasR raer RCurl RCurl rhdf5 rhdf5 rhdf5 Rhtslib rmorie rmoriebricklayer rmoriebricklayer Rsamtools RSQLite RSQLite rtracklayer scPipe SingleMoleculeGenomicsIO smer smer stPipe strawr strawr taco VariantAnnotation vcfppR vcfppR |
|---|
| cyrus-sasl2 | Cyrus SASL authentication abstraction library | libsasl2-dev
| mongolite mongolite |
|---|
| expat | XML parsing C library | libexpat1-dev
| marcxmlr marcxmlr |
|---|
| ffmpeg | FFmpeg library containing media filters | libavfilter-dev
| av av |
|---|
| fftw3 | Library for computing Fast Fourier Transforms | libfftw3-dev
| bioacoustics bioacoustics cartogramR diversitree diversitree fastlpr fftw fftwtools fftwtools hydrorecipes image.CannyEdges image.CannyEdges imager imager KSgeneral KSgeneral MFPCA MFPCA pliman pliman poisbinom poisbinom PoissonBinomial PoissonBinomial PoissonMultinomial qqconf qqconf ravetools ravetools RFIF RFIF Rssa Rssa spate spate SuperGauss SuperGauss |
|---|
| flint | C library for number theory | libflint-dev
| fhe flint flint |
|---|
| fluidsynth | Real-time MIDI software synthesizer | libfluidsynth-dev
| fluidsynth fluidsynth |
|---|
| fontconfig | Generic font configuration library | libfontconfig-dev
| devEMF devEMF skiagd string2path systemfonts systemfonts |
|---|
| fortran | Runtime library for GNU Fortran applications | | acepack acousticTS acousticTS apportion bain bain basicspace BayesFM bayesQR bayesQR bbqr bbqr BFpack BFpack BFpack bgw bsamGP BTSR BTSR bvpSolve bvpSolve caRamel caRamel catch causalSLSE causalSLSE cglasso clinfun clinfun clusterCrit clusterCrit clusterCrit coxphf coxphf coxphw coxphw crimCV cts DAISIE DAISIE dBlockmodeling DCCA Delaporte Delaporte deSolve deSolve dfsaneacc dglars DirStats DirStats DMMF DNAcopy dsdp dtrSurv DySS EcoNetGen EcoNetGen EpiILMCT EpiILMCT eRm extremis FactorCopulaModel faissR FAS FAS fastcox fastcox fastkqr frailtypack frontier frontier funcreg gcdnet gcdnet GeneSelectMMD geoBayes gglasso gglasso glasso gmm gmm groupTesting growth growth grpnet gslnls gslnls HDtweedie hierNest hierNest Hmisc Hmisc islasso islasso JLPM JLPM kerndwd KFAS KFAS ktweedie ktweedie lcmm lcmm LMest localgauss longitree lorec LWFBrook90R LWFBrook90R mcr mcrPioda midasml midasml mixor mixor momentfit momentfit mpath mpath mpmi mpmi MSCMT MSCMT msda msda multimode multitaper multitaper MultNonParam Nmix NormPsy NormPsy npregfast npregfast npROCRegression npsp npsp NScluster numOSL NuPoP nwsrfsr oc oc oscar oscar PEcAn.BASGRA popsom7 prefmod prefmod PropClust PRTree PRTree PWEALL qgg qgg r3PG r3PG RaschSampler RefBasedMI RefBasedMI restrend RGN RGN rms rms rmumps rmumps RobustAFT rrelaxiv rsae rsae rsofun rsofun RZooRoH SALES SALES SatRbedo seq2R seq2R sequoia sequoia sm SmoothHazard smwrQW sparsegl sparsegl sparsenet svd svd swdpwr SynExtend TensorClustering TensorClustering tmvtnorm tmvtnorm transfR TreeSim trend tseriesEntropy tseriesEntropy tseriesTARMA TSSS TULIP twdtw twdtw tweedie tweedie VCA vegan vegan WLreg wnominate wsbackfit |
|---|
| freetype | Freetype 2 font engine | libfreetype-dev
| Cairo Cairo devEMF devEMF gdtools gdtools gridmicrotex gridmicrotex ragg ragg rgl rgl showtext showtext skiagd sysfonts sysfonts systemfonts systemfonts textshaping textshaping xdvir |
|---|
| fribidi | Free Implementation of the Unicode BiDi algorithm | libfribidi-dev
| gridmicrotex gridmicrotex textshaping textshaping |
|---|
| gcc | GCC Quad-Precision Math Library | | acousticTS acousticTS |
|---|
| gdal | Geospatial Data Abstraction Library | libgdal-dev
| gdalBindings gdalcubes gdalcubes gdalraster gdalraster ICESat2VegR ICESat2VegR lasR prepr rGEDIsimulator rlas rlas sf sf terra terra vapour vapour xbioclim xbioclim |
|---|
| geos | Geometry engine for Geographic Information Systems | libgeos-dev
| apcf apcf cvr exactextractr exactextractr lwgeom lwgeom sedonadb sf sf terra terra |
|---|
| ginac | GiNaC symbolic framework runtime library | libginac-dev
| finitization |
|---|
| glib | GLib library of C routines | libgio-2.0-dev
| keyring keyring RcppCWB RcppCWB Rpoppler rsvg rsvg |
|---|
| glibc | GNU C Library: Shared libraries | libc6-dev
| acousticTS acousticTS assist astrochron BayesFM BFpack BFpack BFpack bgw bigdatadist bild bsamGP BTSR BTSR bvpSolve bvpSolve causalSLSE causalSLSE circular crimCV CSTools ddalpha deSolve deSolve dglars DirStats DirStats dplR dplR dti eha EpiILMCT EpiILMCT etasFLP FactorCopulaModel fastcox fastcox fastmatrix fGarch fields fields frailtypack funcreg gcdnet gcdnet GeneSelectMMD geoBayes GeoModels gglasso gglasso glmmML growth growth grpnet gslnls gslnls gss HDtweedie HiddenMarkov hierNest hierNest HMMextra0s IAPWS95 IAPWS95 IndependenceTests islasso islasso JLPM JLPM KFAS KFAS leafblower LMest lmom lmomRFA localgauss longitree ltsk marked marked mclust mets mets mhurdle mhurdle midasml midasml mixor mixor mnormt mongolite mongolite mpath mpath mvtnorm mvtnorm Nmix npROCRegression NScluster numOSL nwsrfsr pcLasso PEcAn.BASGRA PEcAnRTM pingr pingr popPCR popPCR ppmSuite prefmod prefmod probout PropClust PWEALL qgg qMRI quantreg r3PG r3PG RAMP RAMP RcppPlanc RcppPlanc repeated repeated revss revss Rgraphviz rms rms robscale robscale robust robust RobustAFT robustarima robustarima rsofun rsofun rtorf RZooRoH SAPP sequoia sequoia SmoothHazard smwrQW spam spam64 sparsegl sparsegl SPECIES splancs splancs splancs stepPlr swdpwr SynchWave tgcd timsac transfR tseriesEntropy tseriesEntropy TSSS |
|---|
| glibmm | C++ wrapper for the GLib toolkit | libglibmm-2.4-dev
| HilbertVisGUI |
|---|
| glpk | Linear programming kit with integer (MIP) support | libglpk-dev
| glpsol glpsol igraph igraph igraph.dev leidenbase rDEA rDEA Rglpk Rglpk sdcTable |
|---|
| gmp | Multiprecision arithmetic library | libgmp-dev
| arrangements arrangements corels corels flint flint FLSSS GeoFIS gmp hypergeo2 hypergeo2 prepr rcdd RcppAlgos RcppAlgos RcppBigIntAlgos RcppBigIntAlgos Rmpfr Rmpfr sbrl surveyvoi symengine symengine TDA |
|---|
| gpgme | GPGME - GnuPG Made Easy | libgpgme-dev
| gpg |
|---|
| grpc | High performance general RPC framework | libgrpc++-dev
libgrpc-dev
| bigrquerystorage bigrquerystorage rgrpc rgrpc |
|---|
| gsl | GNU Scientific Library (GSL) | libgsl-dev
| abn abn AMOUNTAIN BayesChange BayesChange BayesVarSel BayesVarSel bbl BNSP catSurv catSurv CBN2Path ccfindR cit CLVTools CLVTools coga coga DirichletMultinomial diversitree diversitree dynr eaf eaf EHRmuse EHRmuse excursions excursions fingerPro fingerPro flowPeaks frailtyMMpen frailtyMMpen fRLR fRLR GeneralizedWendland GLAD GPBayes GPBayes gsl gsl gslnls gslnls hgwrr hgwrr hSDM hSDM iBMQ immunoClust IntegMultiReg island jSDM jSDM landsepi LCMCR Libra libstable4u libstable4u lnmixsurv lnmixsurv markets mashr mashr mBvs mcrPioda minimaxALT minimaxALT mixcat mixture mmpca mmpca monoreg mvabund mvabund mvst PEPBVS PEPBVS pladdrr psbcGroup QF rcontroll rcontroll RcppDPR RcppGSL RcppGSL RcppZiggurat RcppZiggurat RDieHarder RDieHarder rGEDIsimulator ridge ridge RJMCMCNucleosomes Rlibeemd Rlibeemd rnetcarto rnetcarto Rsubbotools rtmpt rtmpt sbrl SecAct SemiCompRisks shrinkTVP SimInf SimInf smam smam spaMM stpphawkes stpphawkes survSNP SymTS topicmodels uqsa uqsa uqsa VBLPCM vol2birdR vol2birdR |
|---|
| gtk+ | GTK graphical user interface library - old version | libgtk2.0-dev
| HilbertVisGUI |
|---|
| gtkmm | C++ wrappers for GTK+ 2 | libgtkmm-2.4-dev
| HilbertVisGUI |
|---|
| harfbuzz | OpenType text shaping engine | libharfbuzz-dev
| Cairo Cairo textshaping textshaping |
|---|
| hdf5 | HDF5 C runtime files - serial version | libhdf5-dev
| BPCells hdf5r hdf5r hdf5r RcppPlanc RcppPlanc rGEDIsimulator vol2birdR vol2birdR |
|---|
| highway | Efficient and performance-portable SIMD wrapper | libhwy-dev
| BPCells |
|---|
| hiredis | Minimalistic C client library for Redis | libhiredis-dev
| heartbeatr RcppRedis RcppRedis redux redux |
|---|
| hwloc | Hierarchical view of the machine | libhwloc-dev
| RcppPlanc RcppPlanc |
|---|
| icu | International Components for Unicode | libicu-dev
| Cairo Cairo charr charr stringi stringi |
|---|
| imagemagick | Image manipulation library | libmagick++-7.q16-dev
libmagickwand-7.q16-dev
libmagickcore-7.q16-dev
| magick magick |
|---|
| jags | Just Another Gibbs Sampler for Bayesian MCMC | jags
| abn abn afthd aggreCAT aggreCAT agRee altmeta ArchaeoChron atacInferCnv auRoc autoMR autoMR bacistool baker baker bamdit baskoptr baskoptr basksim basksim baskwrap baskwrap BayesCACE bayescount bayescount BayesGWQS BayesianMediationA bayesmix BayesMoFo bayesMRM bayesmsm bayesmsm BayesPostEst BayesPostEst BayesRS BayesRS BayesTwin BayesTwin BayLum BayLum BCHM BDIB bdribs beaver beaver beer BEND BEND BeQut bfw bfw bhmbasket bhmbasket bipd bipd blrm bml bml bnma bnma boral bsam BTIME BTSPAS BTSPAS buzzMed buzzMed CNVrd2 CoDaLoMic COMBO COMBO cosimmr cosimmr crmPack crmPack crossnma crossnma dclone dclone dcmle dcmle DM dreamer dreamer dscoreMSM EBASE EBASE EcoDiet EcoDiet eefAnalytics eoa3 epts ern eSIR ewoc ewoc EWOC.Comb gconsensus gemtc gemtc gemtcPlus groupWQS handwriter handwriter handwriterApp handwriterApp handwriterRF handwriterRF hbbr hdbma HiLDA historicalborrow IIVpredictor infercnv invitroTKstats invitroTKstats isoWater jagshelper jagshelper JAGSmodule jagstargets jagstargets jagsUI jagsUI jarbes JMbayes JMbayes jmbr JointAI JointAI lcra lcra longit LoTTA MBNMAdose MBNMAdose MBNMAtime MBNMAtime mbpp mcmsupply mcmsupply mcp mcp metainsight midas2 midas2 MigConnectivity MigConnectivity miscF MisRepARMA missingHE missingHE MixSIAR MixSIAR morse morseDR msaeHB MVMR.CUE mvnma mvnma NAPrior NCC NCC neojags neojags nichetools nichetools NMADTA NobBS NobBS occumb occumb OceanTracer optimalThreshold ordinalbayes ordinalbayes ordinalRR pcnetmeta PEcAn.all PEcAn.assim.batch PEcAn.MA PEcAn.photosynthesis PEcAn.priors PEcAn.uncertainty PEcAn.workflow PEcAnAssimSequential PEcAnRTM pexm pexm phase1PRMD phase1PRMD phase1RMD phase1RMD phenoCDM pivmet pivmet popbayes popbayes PottsUtils prevalence prevalence psborrow psborrow PVAClone PVAClone R2jags rACMEMEEV rACMEMEEV RcmdrPlugin.RMTCJags remiod remiod reslr reslr rjags rjags rjags rnmamod rnmamod RoBMA RoBMA RoBSA RoBSA RobustBayesianCopas Romeb Romeb runjags runjags S3VS S3VS saeHB saeHB.ME saeHB.ME.beta saeHB.ME.beta saeHB.panel saeHB.panel saeHB.panel.beta saeHB.panel.beta saeHB.spatial saeHB.spatial saeHB.Spatial.Beta saeHB.Spatial.Beta saeHB.twofold saeHB.twofold saeHB.unit saeHB.unit saeHB.ZIB SAME scDECO scDECO selectKSigs serodynamics serodynamics sharx sharx SIBER SIBER simmr simmr snSMART snSMART sparsesurv sparsesurv ssifs SurviMChd TreeBUGS TreeBUGS UHM UHM unmconf zoib |
|---|
| jq | Lightweight and flexible command-line JSON processor | libjq-dev
| jqr jqr |
|---|
| json-c | JSON manipulation library | libjson-c-dev
| mypaintr |
|---|
| libarchive | Multi-format archive and compression library | libarchive-dev
| archive archive |
|---|
| libavif | Library for handling .avif files | libavif-dev
| avif |
|---|
| libdeflate | Fast, whole-buffer DEFLATE-based compression and decompression | libdeflate-dev
| GMMAT GMMAT MAGEE MAGEE pgenlibr Rpgen vcfppR vcfppR |
|---|
| libffi | Foreign Function Interface library runtime | libffi-dev
| RSimpleFFI |
|---|
| libgit2 | Low-level Git library | libgit2-dev
| gert gert git2r git2r |
|---|
| libglu | Mesa OpenGL utility library | libglu1-mesa-dev
| lidRviewer rgl rgl |
|---|
| libglvnd | Vendor neutral GL dispatch library | libgl-dev
| lidRviewer rgl rgl tigerfb |
|---|
| libidn2 | Internationalized domain names (IDNA2008/TR46) library | libidn2-dev
| punycoder punycoder |
|---|
| libjpeg-turbo | Libjpeg-turbo JPEG runtime library | libjpeg-turbo8-dev
| Cairo Cairo cito jpeg jpeg qpdf qpdf ragg ragg |
|---|
| libopenmpt | Module music library based on OpenMPT | libopenmpt-dev
| openmpt |
|---|
| libpng | PNG library | libpng-dev
| cito ggiraph ggiraph png png ragg ragg rgl rgl rvg rvg svglite svglite unigd unigd vdiffr vdiffr |
|---|
| librsvg | SAX-based renderer library for SVG files | librsvg2-dev
| rsvg rsvg |
|---|
| libsbml | System Biology Markup Language library | libsbml5-dev
| NetPathMiner rsbml |
|---|
| libsdl2 | Simple DirectMedia Layer - "classic" implementation as non-default | | lidRviewer |
|---|
| libsdl3 | Simple DirectMedia Layer, version 3 | libsdl3-dev
| fluidsynth fluidsynth |
|---|
| libsecret | Secret store | libsecret-1-dev
| keyring keyring |
|---|
| libsigc++ | Type-safe Signal Framework for C++ | libsigc++-2.0-dev
| HilbertVisGUI |
|---|
| libsodium | Network communication | libsodium-dev
| rmorie sodium sodium |
|---|
| libssh | Tiny C SSH library | libssh-dev
| ssh ssh |
|---|
| libunwind | Library to determine the call-chain of a program | libunwind-dev
| QuickBLAST winch winch |
|---|
| libuv1 | Asynchronous event notification library | libuv1-dev
| fs fs httpuv httpuv httpuv |
|---|
| libwebp | Lossy compression of digital photographic images | libwebp-dev
| ragg ragg webp webp |
|---|
| libx11 | X11 client-side library | libx11-dev
| Cairo Cairo imager imager rayrender rayrender rgl rgl tigerfb tkrplot |
|---|
| libxcrypt | Libcrypt shared library | libcrypt-dev
| Rserve Rserve |
|---|
| libxml2 | GNOME XML library | libxml2-dev
| arrow arrow CytoML igraph igraph igraph.dev leidenbase marcxmlr marcxmlr NetPathMiner OECDdata OECDdata XML XML xml2 xml2 xmlrectr xmlrectr xslt xslt |
|---|
| libxslt | XSLT 1.0 processing library | libxslt1-dev
| xslt xslt |
|---|
| libzstd | Fast lossless compression algorithm | libzstd-dev
| cytome fraq fstcore GMMAT GMMAT lstar lstar MAGEE MAGEE nanoarrow nanoarrow nanoarrow opentimsr pgenlibr qs2 qs2 Rarr Rarr Rarr Rpgen seqminer seqminer zstd zstd |
|---|
| lz4 | Fast LZ compression algorithm library | liblz4-dev
| cytome fstcore nanoarrow nanoarrow nanoarrow |
|---|
| mbedtls | Lightweight crypto and SSL/TLS library | libmbedtls-dev
| nanonext nanonext nanonext nanonext |
|---|
| mecab | Libraries of Mecab | libmecab-dev
| RcppMeCab RMeCab |
|---|
| mpfr4 | Multiple precision floating-point computation | libmpfr-dev
| flint flint GeoFIS hypergeo2 hypergeo2 multibridge multibridge Rmpfr Rmpfr rvMF rvMF scModels surveyvoi symengine symengine |
|---|
| mysql | MySQL database client library | libmysqlclient-dev
| RMariaDB RMariaDB RMySQL RMySQL |
|---|
| netcdf | Interface for scientific data access to large binary data | libnetcdf-dev
| gdalcubes gdalcubes ncapi ncdf4 RNetCDF RNetCDF |
|---|
| ocl-icd | Generic OpenCL ICD Loader | ocl-icd-opencl-dev
| GeneralizedUmatrixGPU |
|---|
| onetbb | Parallelism library for C++ | libtbb-dev
| AovBay atsar baggr baggr bakR baldur baldur barmixR BASiCStan bayes4psy bayescoveragedeploy bayesdfa bayesdfa bayesforecast bayesforecast BayesGmed BayesGmed BayesGrowth BayesGrowth BayesianPlatformDesignTimeTrend BayesianPlatformDesignTimeTrend bayeslist BayesPET BayesSenMC BayesSenMC bayesZIB bbmix bclogit bclogit beastt beastt BeeGUTS bellreg bellreg bennu bennu Bernadette BinaryReplicates BinaryReplicates BINtools birdie birdie bistablehistory bistablehistory blavaan blavaan bmgarch bmgarch bmggum bmggum bmlm bmlm bmsma bmstdr bmstdr BoundIRT BPrinStratTTE BPrinStratTTE bqmm bqmm breathteststan BRRAT BRRAT bscm bsynth bsynth bws bycatch CARME CausalQueries CausalQueries cbq cellmig cloneRate cloneRate ClustIRR CNVRG CNVRG conStruct conStruct ctsem ctsem DCPO DCPO decemedip decontX densEstBayes dgevbhm disbayes disbayes EcoEnsemble EcoEnsemble eDNAjoint eDNAjoint eggCounts EloSteepness EloSteepness EpiNow2 EpiNow2 EpiPvr EpiStrainDynamics epluspar fcirt fcirt FlexReg ForceChoice gastempt geostan geostan geostan glmbayes glmbayesCore glmbayesCore glmmfields glmmPen glmmPen greencrab.toolkit greencrab.toolkit GUD GUD hbamr hbamr hestia hestia HHBayes HHBayes historicalborrowlong hmde hmde hsstan hsstan hwep hwep IgGeneUsage imt imt imuGAP imuGAP intervalpsych intervalpsych isotracer jfa jfa jointlyr kelpbio lgpr lmebayesCore LMMELSM LMMELSM MADPop MADPop markets measr measr metaBMA MetaboDynamics metamixr metamixr MetaStan MetaStan miniLNM miniLNM MIRES MIRES missknn mlts mlts mlumr mlumr morseTKTD moultmcmc moultmcmcExtra mrbayes mrbayes mrlocus msmbayes multinma multinma multipleDL multipleDL mvdlm nbhdmodel networkscaleup networkscaleup networkscaleup OncoBayes2 OncoBayes2 parTimeROC parTimeROC pcFactorStan pcFactorStan pema pema phacking phacking phylopairs PoolTestR PoolTestR postlink postlink ppcseq ProbBreed ProbBreed prophet prophet prophet proxyC proxyC psBayesborrow psrwe psrwe publipha publipha quanteda quanteda quanteda.textstats quanteda.textstats R2D2ordinal rater rater RBesT rbioacc rbioacc rcbayes rcbayes RcppParallel RcppParallel Rlgt Rlgt rmBayes rmBayes rmdcev rmdcev rmsb rmsb robscale robscale RoBTT rPBK rstanarm rstanarm rstanbdp rstanbdp rstanemax rts2 saeHB.TF.beta saeHB.TF.beta scMET seededlda seededlda serofoi serosv serosv shrinkr shrinkr SLGP spacemodR spacemodR spsurv spsurv ssMousetrack ssrhom stan4bart StanMoMo SteadyStateBVAR SteadyStateBVAR surveil surveil survextrap survextrap survHEhmc survstan survstan TelemetrySpace TelemetrySpace terra terra thurstonianIRT thurstonianIRT tipsae tmbstan tmbstan trialr TriDimRegression TriDimRegression truncnormbayes truncnormbayes tsnet tsnet tvvarss ubms ubms ugcflss varlasso walker walker WhiteLabRt WhiteLabRt winputall WSPsignal WSPsignal YPBP YPBP YPPE YPPE zoid zoid |
|---|
| openbabel | Chemical toolbox library | libopenbabel-dev
| ChemmineOB |
|---|
| openblas | Optimized BLAS | libopenblas0-pthread
| abclass abctools abctools abn abn acc acebayes ACEt ACEt acousticTS acousticTS ActiveLearning4SPM actuar ADAPT adapt3 adapt3 adaptivetau adaptivetau adaptIVPT adaptIVPT ade4 ade4 ade4 adespatial adespatial adimpro adlift AdmixPoly admixtools ADMM ADMM affyPLM aftgee aftgee aftPenCDA aftPenCDA aftsem aftsem afttest afttest AGCA4extremes AGCA4extremes AGHmatrix AGHmatrix ahaz aifeducation aifeducation aihuman aihuman AllelicSeries AllelicSeries alpaca alpaca AlphaSimR AlphaSimR amatrix amatrix.arrayfire Amelia AnalyzeFMRI anclik anMC anMC ANN2 ANN2 anominate aorsf aorsf ape ape apollo APRScenario APRScenario ARCensReg ARCensReg ARCokrig ARCokrig arfima arfima arkhaia arkhaia arrApply arrApply asmbPLS asmbPLS assist ast2ast ast2ast aster ASV ATNr AURMC AURMC Avionic24 aws badp BalancedSampling BalancedSampling bama bamlss bamp bamp BANDITS bandle BAREB bark bark bartisan bartisan BAS BAS baseline baseline BASiCS basicspace baskexact baskexact BASSLINE batchmix batchmix Bayenet Bayenet BayesChange BayesChange bayesCureRateModel BayesDecon bayesDP bayesDP bayesefa bayesEO bayesEO BayesFM BayesianLasso BayesianLasso bayesianVARs bayesianVARs bayeslm bayeslm bayesm BayesMallows BayesMallows BayesMallowsSMC2 BayesPPD BayesPPDSurv bayesQR bayesQR bayesQRsurvey bayesQRsurvey BayesRegDTR BayesRegDTR Bayesrel BayesSpace BayesSUR BayesSUR BayesSUR bayesSurv BayesSurvive BayesSurvive bayestransmission bayesWatch bayesWatch baygel baygel bayMDS BCClong BCClong BCEE bcf bcf BCFM BCFM bcp bcp bcROCsurface bcROCsurface bcv bcv BDgraph bdrc bdrc bdsm bdsvd bdsvd beam beam BEKKs betaBayes betaregscale betaregscale beyondWhittle BFpack BFpack BGGM BGGM BGLR bgms bgms bgns bgns BGVAR BGVAR bhetGP bHIVE BHMSMAfMRI BHMSMAfMRI BHSBVAR bife bife BIFIEsurvey BIFIEsurvey bigalgebra bigalgebra BigDataStatMeth bigergm bigGP bigGP bigKNN bigKNN bigPCAcpp bigPCAcpp bigPLScox bigPLScox bigPLSR bigPLSR bigReg bigReg bigsnpr bigsnpr bigstatsr bigstatsr bigtime bigtime BigVAR BigVAR binaryGP binGroup2 binspp binspp biosensors.usc biosensors.usc birp birtRcpp BKP BKP BKPC BKPC blatent blatent Blend Blend bliss bliss BLMEngineInR BLMEngineInR blockmodels blockmodels blox blox BLPestimatoR blvim blvim BMIselect BMIselect bnlearn BNPmix BNPmix BoltzMM BoltzMM bonsaiforest bootCT bootUR bootUR bpgmm bpgmm bpnreg bpnreg bpr BPRMeth bpvars bpvars bqtl BradleyTerryScalable BranchGLM BranchGLM BRISC brmsmargins brmsmargins brnn bsamGP BSPBSS BSPBSS bspline bspline bssm bssm BSSprep BSTFA BSTFA bsvars bsvars bsvarSIGNs bsvarSIGNs BTLLasso BTSR BTSR BTtest BTtest Buddle BuyseTest BuyseTest bvars bvars bvarsv bvarsv bvartools bvartools CAESAR.Suite CAESAR.Suite capr capr capybara carat CARDspa carts catlearn catlearn causalreg causalreg causalSLSE causalSLSE causl ccaPP ccaPP cccp cccp ccImpute CDatanet CDatanet CEC CEC CelliD CellODE CellOracleR CellProgramMapper cellWise CERFIT CERFIT cevcmm cevcmm cglasso changepointGA changepointGA changepoints changepoints chngpt chngpt choicedata choicedata choicer choicer CholWishart CholWishart chomper chomper cinterpolate cinterpolate circlus circlus circumplex circumplex cIRT cIRT cit CLAMP clarabel clarabel clubpro clubpro ClusPred clusterCrit clusterCrit clusterCrit clusterGGM clusterMI ClusterR ClusterR CLVTools CLVTools cmfilter cmfrec cmfrec CMGFM CMGFM COAP COAP coda.base coda.base coFAST coFAST colorednoise colorednoise combreg combreg COMIX COMMOTR complex complex CompositionalZADR compositions coneproj conleyreg conleyreg conos conos conquer conquer ContaminatedMixt coop coop copCAR Coreset coresynth coresynth corMLPE corMLPE cosimmr cosimmr Countr covglasso CovTools CovTools CoxPlus CPE CPGLIB CPGLIB cplm cppSim cppSim cpr cpr cqrReg crandep crandep crawl crawl crimCV Crossover Crossover CSeQTL CSeQTL CspStandSegmentation CspStandSegmentation ctmcd cTMed cTMed cts cts cvLM cvLM CWT CWT CytoML cytosignal CytoSimplex CytoSimplex dann dann darwin DatabionicSwarm DatabionicSwarm dateutils dateutils dbrobust DCCA dcce dccmidas dccpp dccpp dcov dcurver dcurver deBif deBif deepgp deforestable deform deform DegNorm densemlp densemlp densEstBayes densityratio densityratio DepthProc DepthProc deseats deseats DESeq2 DESeq2 desla desla deSolve deSolve devianLM dexter dexter dfms dfms dfphase1 dglars DGP4LCF DGP4LCF dgtf dgtf diagis diagis DifferentialRegulation DIFM dina dina distinct diversitree diversitree dlm dmbc dmbc dmrfit dmrfit dMrs DoseFinding DoseFinding DOVE dpcid dppmix DR.SC DR.SC drclust dream dream drgee drgee DRIP DRIP drrglm drrglm dsdp DstarM DstarM DSWE DSWE dti dtwclust dtwclust DyadiCarma DyadiCarma dynaTree dynmix dynmix DySS Eagle earth ebdbNet ebdbNet EBEN eBsc eBsc ebTobit ebTobit echoice2 echoice2 echos echos eco eco ecodist ecodist economiccomplexity edgeR EDI EDI edina edina eDMA eDMA eegUtils EFAfactors EFAtools EFAtools eFCM eha eigencore eimpute ELAplus elmNNRcpp elmNNRcpp emBayes EMCluster EMCluster EMgaussian EMgaussian emIRT emIRT EMMIXgene empichar empichar endorse endorse energymethod epicR epicR epigraHMM EpiLPS EpiLPS epistasisGA equateMultiple EquiTrends EquiTrends ergmito ergmito errum errum esaddle esaddle esemifar esreg esreg etm etm evgam evgam evgmrf evgmrf evinf evinf evolqg evolqg exdqlm exdqlm ExhaustiveSearch ExhaustiveSearch exnexSurv exnexSurv experiment experiment expm expm expQ2 ExtremalDep ExtremalDep exuber exuber fabMix factorstochvol factorstochvol fad fad faissR fanc fastadi fastadi FastBandChol fastcpd fastcpd fastei fastei fastFGEE fastFGEE fastGHQuad fastGHQuad fastGLCM fastGLCM fastglmpca fastglmpca fasthurdle fastICA fastkqr FastKRR FastKRR fastliu fastM fastmatrix fastphylosig fastphylosig fastPLS fastPLS fastPLS fastrda fastsae fastsae fastTopics fastTopics FBFsearch fChange fChange fclust fdacluster fdacluster fdaMixed fdaMixed fdaSP fdasrvf fdasrvf fdesigns fDMA fDMA fect fect fEGarch FGLMtrunc fICA fields fields filling filling FIRM fixes fixes FKF FKF flexBART flexBART flexBCF flexBCF FlexVarJM FlexVarJM float float FLORAL FLORAL flowCore FLOWMR flowWorkspace fmri fmriAR fmriAR fmrigds fmrihrf fmrilss fmrireg forecast forecast fourierin fourierin fracdiff fracdiff FRASER FRESA.CAD funcharts funcharts funcreg funMoDisco FusioMR FuzzySimRes FuzzySimRes fwildclusterboot GADAG GADAG gam gamlss2 gamsel gamselBayes GAS GAS gaselect gaselect gasper gasper GauPro GauPro gcKrig gclm gclm gclm gcmrec gcmrec GCPBayes GCSM GCSM GDINA GDINA gdpc gdpc gee GEEaSPU geer geer geigen geiger geiger GEModelR GEMSS GenomicDataStream genpca GenSA geoBayes geocmeans geocmeans geocomplexity geocomplexity GeoDiff geommc geommc GeoModels GeoModels geosmooth geosmooth geostatsp geostatsp GFisher GFM GFM GGMncv GGMncv GGPA ggsc gicf gigg gigg gjam Glarmadillo glcm glcm GLCMTextures GLCMTextures glmbayes glmbayesCore glmbayesCore glmGamPoi glmm glmmEP glmmML glmmsel glmmsel glmSTARMA glmSTARMA glt glt GMCM GMCM gmm gmm GMMAT GMMAT gmtFD gmvjoint gmvjoint gmwmx2 gmwmx2 gMWT gMWT gnm gnm gofar gofar GOFclustering goffda goffda GPCMlasso gpcp gpcp GPFDA GpGp GpGp gps gps gpss gpss GPTCM GPTCM GPvam GPvecchia GRAB graper graphicalEvidence graphicalVAR grasps grasps gratia gRbase gRbase greed greed GreedyEPL GRENITS gridOT gRim gRim grove grpsel grpsel GSE gss gstat gstat GWASBrewer GWASinlps GWASinlps GWmodel hann hann harmony harmony hawkes HDANOVA HDANOVA hdbcp hdbcp HDElliptical HDElliptical hdflex hdflex hdnom hdnom HDNRA HDNRA hdpGLM hdpGLM hdrm hdrm HDSpatialScan HDTD HDTSA HDTSA HDtweedie hgm hgwrr hgwrr hhdynamics hhdynamics hibayes hibayes HiCPotts HiDimDA HiGarrote highfrequency highfrequency hIRT hIRT HiSpaR HistDAWass HistDAWass hitandrun hitandrun hkevp hkevp HLMdiag HLMdiag hmcdm hmcdm hpa HSAR HSAR hsphase HTLR HTLR huge huge hydrorecipes hypervolume hypervolume iapws iAR iAR IBGS IBGS ibr iccbeta iccbeta iClusterVB iClusterVB ICSClust ICSClust ICtest ICtest idefix idefix iDOVE ieTest iglm iglm iglm igraph igraph igraph.dev IMR IMR inca IndependenceTests inferCSN INLAspacetime INLAspacetime INLAtools interep IntervalCensoredMultistateR2 intkrige intkrige intrinsicFRP intrinsicFRP intsurv intsurv ipfp ipfp irlba irlba IRTM islasso islasso ivdoctr ivdoctr ivx ivx jackalope jackalope JANE JANE JFM JMbayes JMbayes JMbayes2 JMbayes2 jmcm jmcm joineRML joineRML jointDiag jointDiag jrSiCKLSNMF jrSiCKLSNMF jSDM jSDM kalmanfilter kazaam kdecopula kdecopula kerndwd KernelKnn KernelKnn kernlab kernR KernSmooth KFAS KFAS kimfilter KODAMA krige ksm ksm kyotil kyotil l0ara L0Learn L0Learn l1spectral LA laGP lakhesis lakhesis LAM LAM LaMa LaMa lame lame lamle Langevin LangevinFlow LangevinFlow LassoHiDFastGibbs LassoHiDFastGibbs latentnet latentnet lavacreg lavacreg lavaSearch2 lavaSearch2 layeranalyzer lazymatrix lazymatrix LCPA ldsep ldsep ldt LEA leafblower lefko3 lefko3 legion legion leidenbase lemur lemur leontief leptokurticMixture lessSEM lessSEM lfa lfe lglasso lgspline lgspline libcoin libcoin LiblineaR lidR lidR LikertMakeR LikertMakeR limma limSolve limSolve linelistBayes linelistBayes list list lit lit ljr lm.br lmebayesCore LMest lmmprobe lmmprobe Lmoments lmSubsets lmSubsets lnmixsurv lnmixsurv localgauss LOCOM2 LOCOM2 LogConcDEAD logconcens logcumulant logcumulant logistf logistf logspline longclust lorec lotri lotri lowmemtkmeans lowmemtkmeans lowpassFilter LowRankQP lpirfs lpirfs lpSolveAPI lpSolveAPI lqmm lsirm12pl LSJM LSJM lsReg ludic ludic luna lwpls lwpls MADMMplasso MADMMplasso MAGEE MAGEE magi MAGICR magree MAINT.Data malan malan manifold ManifoldOptim manifoldsculpting ManlyMix maotai maotai mapfit mapfit maptpx maptpx marble marble MarginalMaxTest MarginalMaxTest markerpen markerpen markophylo markovchain markovchain masc masc mashr mashr mastif MAT MAT matchingMarkets matchingMarkets Matrix Matrix matrixCorr matrixCorr MatrixCorrelation MatrixCorrelation matrixdist matrixdist MatrixExtra MatrixExtra MatTransMix MAVE mbkmeans mboost mboost mccca mccca mcemGLM mclust MCMCprecision MCMCprecision mcmcse mcmcse MDCcure MDCcure mdclust mdgc mdgc mdmb mdmb MDP2 MDP2 mdsOpt MendelianRandomization MendelianRandomization MESS MESS metafolio metafolio MetaHD metaRange metaRange methylclock mets mets mev mev MFSD mgcca mgcv mgcv MGMM MGMM mgwrsar mhpfilter mhpfilter miceadds miceadds miceFast miceFast microsimulation microsimulation mig mig miloR milr milr minimaxALT minimaxALT minimaxApprox minimaxApprox miniPCH miniPCH minpack.lm mirt mirt mirtCAT mirtCAT MissCP missoNet missoNet missSBM missSBM mixAK mixedBayes mixedBayes mixedCCA mixedCCA mixedClust mixedMem mixedMem MixMatrix MixMatrix MixSim MixSim mixsqp mixsqp mixture MLEcens mlegp mlegp mlpack mlpack mlrv mlstm mlstm MMGFM MMGFM mmsample MNARclust mnorm MNP MNP modeLLtest modeLLtest modelSelection modelSelection modsem modsem MOFAT mombf mombf mombf momentfit momentfit momentuHMM momentuHMM MomTrunc MomTrunc monomvn Morpho Morpho moveHMM moveHMM moveMMPP mp mp mpath mpath mpem mpem MR.Corr2 MR.CUE MR.LDP mr.mashr mr.mashr MR.RGM MR.RGM MRAID MRCCC mrfDepth mrgsolve mrgsolve MRPATH MSCMT MSCMT MSGARCH msgps MSIMST MSIMST msm MSstats MSTest MSTest MTLR MTLR multAbund multbxxc MultiCOAP MultiCOAP MultiEFM MultiEFM multilevLCA multilink multilink multinomineq multinomineq multipleOutcomes multipleOutcomes MultiRFM MultiRFM MultiscaleDTM MultiscaleDTM multitaper multitaper multivar MultNonParam MultOrdRS MultOrdRS MultSurvTests MultSurvTests muse muse mutualinf mutualinf mvgam mvgam mvMAPIT mvMAPIT mvMORPH mvMORPH MVMR.CUE MVMRcML mvnfast mvnfast mvrsquared mvrsquared mvtnorm mvtnorm n1qn1 n1qn1 NAM NAM navigation navigation ncpen ncpen netClust netdiffuseR netdiffuseR nethist nethist NetMix NetMix netpanel netpanel NetPathMiner NetRep NetRep NetworkChange NetworkChange NetworkDistance NetworkDistance neurotransform nevada nevada ngme2 ngme2 ngspatial nimble nimble nleqslv nleqslv nlmixr2est nlmixr2est nlmixr2extra nlmixr2extra nlmm nlmm NLPwavelet NLPwavelet nlsur nmathopencl nmathopencl nn2poly nn2poly nonlinearTseries nonlinearTseries nonneg.cg nonneg.cg nonprobsvy nonprobsvy normalblockr normalblockr np np NPCirc NPflow NPflow npRmpi npsp npsp nQuack nQuack nrMCmix o2plsda o2plsda oc oc oeli oeli oem oem ohoegdm ohoegdm OjaNP OjaNP onlineforecast onlinePCA OpenImageR OpenImageR OPSR OPSR optmatch optmatch ordinalClust orthoDr orthoDr OSFD OutcomeWeights OutcomeWeights OUTRIDER pacotest pacotest PAGFL PAGFL pagoda2 pagoda2 pairscale pairscale PanelSelect panglm panglm parallelDist parallelDist parglm parglm pARI pARI parma parma PartialNetwork PartialNetwork partition partition party party pcaL1 pcalg pcalg pcaone pcaPP pcaPP PCMBaseCpp PCMBaseCpp PCMRS pda pdSpecEst pdSpecEst pecora pECV pegs penAFT penAFT penalized PenCoxFrail pense pense pEPA pEPA PEPBVS PEPBVS PESTO PFIM pgee.mixed pgee.mixed pgKDEsphere pgmm phangorn phangorn phangorn PhaseType PhaseType phenofit phenofit PHSMM PhylogeneticEM PhylogeneticEM phylosignal phylosignal phyr phyr PhysioAnalysis picreg picreg PINSPlus PJFM pjrt pladdrr planar PLFD PLFD plgp pliman pliman PLNmodels PLNmodels plsRglm plsRglm plssem plssem pmartR pmartR poismf poismf poLCAParallel poLCAParallel polspline polyapost polykde polykde POMaSPU pomp pomp popPCR popPCR porridge PPCI PPforest PPforest ppgmmga ppgmmga PPMR PPMR pprof pprof PPSFS PPSFS PPtreeExt PPtreeExt pqrBayes pqrBayes PRDA PRDA PRECAST preprocessCore prime prime probe probe ProbSVMs ProFAST ProFAST ProfileGLMM ProfileGLMM profoc profoc projpred projpred pRoloc prospectr prospectr prototest proximetricsR proximetricsR proxyC proxyC PRTree PRTree psbcSpeedUp psbcSpeedUp psd psd pseudoCure pseudoCure PSGD PSGD psgp PSPI PSPI psqn psqn psvr psvr psychonetrics psychonetrics pumBayes pumBayes puniform puniform pyinit pyinit qbld qch qcluster qfa qgg qgg qif qif qpgraph qpmR QR qrjoint qtl qtl qtlpoly QTLRel quadprog quadrupen quadrupen quanteda.textmodels quanteda.textmodels QuantileModels QuantileModels QuantilePeer QuantilePeer quantreg QuantRegGLasso QuantRegGLasso QZ QZ Racmacs Racmacs rags2ridges rags2ridges ramcmc ramcmc RandomForestsGLS randompack rangen rare rare ratematrix ratematrix rbcpd rbridge rbridge rCausalMGM RcppArmadillo RcppArmadillo RcppBlaze RcppBlaze RcppDist RcppDist RcppDPR RcppEigen RcppEigen RcppEnsmallen RcppEnsmallen RcppHMM RcppKalman rcppmlpackexamples rcppmlpackexamples RcppPlanc RcppPlanc RcppSMC RcppSMC RcppTrust RcppTrust Rcsdp Rdimtools Rdimtools rdist rdist Rdsdp ReAD RealVAMS recometrics recometrics redeem redeem redist redist redistmetrics redistmetrics registr registr regmed regmhmm regmhmm regMR regMR regnet regnet regsem regsem relsurv remstimate remstimate rENA rENA repolr reReg reReg resemble resemble reservr reservr resourcecode resourcecode revdbayes revdbayes revealedPrefs rexpokit rexpokit Rfast Rfast Rfast2 Rforestry Rforestry Rggml ribiosMath ribiosMath ridgeBART ridgeBART ridgetorus ridgetorus Riemann Riemann RiemBase RiemBase riskRegression riskRegression rlibkriging rlibkriging rliger rliger Rlinsolve Rlinsolve RLT RLumModel RLumModel rmarchingcubes rmarchingcubes RMCLab RMCLab RMFM RMFM rmgarch rmgarch Rmlx Rmodule rmorie RMR.ICP RMSS RMSS rmumps rmumps rMVP rMVP Rnanoflann RNOmni RNOmni roben roben roboBayes robregcc robregcc RobStatTM RobStatTM robsurvey robsurvey robust robust robustarima robustarima robustbase robustbase robustHD robustHD robustlmm robustlmm RobustLPA robustmatrix rofanova rofanova ROI.plugin.qpoases ROI.plugin.qpoases ROKET roll roll rolleigen rolleigen rolloptim rolloptim rollshap rollshap roptim roptim rotations rotations rpeaks Rphylopars Rphylopars rpm rpm rpms rpql RprobitB RprobitB RQK rr rrcov rrcov RRI RRI rrMixture rrpack rrum rrum rsae rsae RSDC RSDC RSO Rsolnp Rsolnp rsparse rsparse rSPDE RSpectra RSpectra rSpectral rSpectral RSSL RSSL RStoolbox RStoolbox rstpm2 rstpm2 RSTr RSTr rsvddpd rsvddpd rTLS rTLS RTMB RTMB RTMBp rtrend rtrend Rtsne Rtsne RuHere RuHere rupturesRcpp rupturesRcpp rust rust rwig rwig RWNN RWNN rxode2 rxode2 s2net s2net saeRobust saeRobust SAGMM SAGMM SAIGEgds SAMGEP SAMGEP samplr samplr sanba sanba SANvi SANvi sarima sarima sbivar SBmedian SBmedian sbmSDP SBMTrees SBMTrees SC3 scalablebayesm ScatterDensity ScatterDensity scClustEval scde SCENT scGPS scINSIGHT scINSIGHT scmap scMitoMut scNPM scNPM scorecraft scorecraft scoringRules scoringRules SCORPION scran scrapper scs scs sctransform scuttle scVeloR SDALGCP2 SDALGCP2 sdetorus sdetorus sdid sdim sdim sdsfun sdsfun secrdesign secrdesign seine SelectBoost.gamlss SelectBoost.gamlss SelectionTools SelectSim SelectSim sem semidist semidist sentometrics sentometrics sentopics sentopics seqHMM seqHMM seroreconstruct seroreconstruct Seurat sfcr sfcr sgd sgd sgdGMF sgdGMF SGDinference SGDinference sglasso sglssnal sglssnal sgolay sgolay sgs sgs shapr shapr shard shard ShrinkCovMat ShrinkCovMat shrinkDSM shrinkem shrinkTVP shrinkTVPVAR SHT SHT Sieve sievePH sievePH SiFINeT SigBridgeRUtils signeR silentema silentema SimBIID SimBIID simcdm simcdm SimJoint SIMLR simmr simmr simplexgof simplexgof simStateSpace simStateSpace SimTOST SimTOST simts simts singR sirt sirt sits sits slalom slam slcm slcm sleev sleev slfm slideimp SLmetrics smaa smaa SMASH smmR smmR smooth smooth smoothemplik smoothemplik smoots smriti smurf smurf SNPRelate snpsettest snpsettest SoftBart sommer sommer songR sorcering sox spAbundance spAbundance SpaCCI SpaceTimeBSS SpaCOAP SpaCOAP SpaGER spam spam64 spanner spanner spantest sparseDFM sparsediff sparsediff SparseICA SparseICA sparseSEM sparsevb sparsevb sparseVCBART sparseVCBART SpatialBSS SpatialExtremes SpatialExtremes SpatialExtremes SpatialInference SpatialInference spatialreg spatialreg SpatialTools SpatialTools SpatMCA SpatMCA SpatMix SpatMix SpaTopic SpaTopic SpatPCA SpatPCA spbal spBayes spBayes spBayesSurv spBPS spBPS spc spCP spCP spcr specs SpectralMM SpectralMM spEDM spEDM spexvb spexvb spfa spFFBS spFFBS sphunif sphunif SpiecEasi spifa spifa spikeSlabGAM spikeSlabGAM spinBayes spinBayes splikit splikit splines2 splines2 splmm spMC spnn spnn spNNGP spNNGP spOccupancy spOccupancy springer springer spStack spStack srm srm ssgraph Sshaped ssMRCD SSOSVM SSOSVM sstvars sstvars STAREG starma starma statespacer statespacer statgenGWAS statgenGWAS statgenQTLxT StatRec stcos stcos StealLikeBayes StealLikeBayes StempCens stepR stepSplitReg stepSplitReg stLMM stLMM stm stm stochcorr stochQN stochvol stochvol stpphawkes stpphawkes stratEst stratEst StratifiedSampling StratifiedSampling STRIDER strucchangeArmadillo strucchangeRcpp strucchangeRcpp sts sts StuteTest subplex subplex subsampling subsampling subselect summary2joint supclust supclust SuperpixelImageSegmentation SuperpixelImageSegmentation SurrogateParadoxTest SurrogateRegression SurrogateRegression surtvep surtvep survAUC survAUC SurvivalClusteringTree survkl survkl susieR svars svars svd svd SVG SVG SVP svytest svytest switchSelection swjm swjm symMCD symmetry synergyMixR synergyMixR synMicrodata T4cluster T4cluster T4transport T4transport tabularMLC tabularMLC TAG tagtools tagtools TAM TAM TapeS TapeS targeted targeted TauStar TauStar TCIU tclust tclust tcv TDAkit TDAkit TDAvec TDAvec tEDM tEDM tensorBSS TestDesign TestDesign tetrascatt tetrascatt textTinyR textTinyR tfarima tfarima tgp tgstat tgstat tidynorm tidynorm tidypopgen tidypopgen timereg timereg tlars tlars tlrmvnmvt tma TMB TMB tmvtnorm tmvtnorm tmvtnsim topocast topocast TPmsm TPmsm trajeR trajeR trc TreeBUGS TreeBUGS treeclim treeclim treestats treestats TruncatedNormal TruncatedNormal truncProxy truncProxy trunmnt tsBSS tseries tseriesTARMA TSLA tsmarch tsmarch tsPI tsPI tvR tvR twinsvm ubms ubms ucminf ucminf UComp unmarked unmarked unmarked Uno Uno UPCM updog updog varband varband varband varmapack VARSELECTEXPOSURE VarSelLCM VarSelLCM VARtests vbpm vbpm VCA VCBART VCBART vcrpart vcrpart VeccTMVN VeccTMVN VectorForgeML VectorForgeML vegan vegan VEwaningVariant visPedigree visPedigree VMDecomp VMDecomp vMF vMF vntrs vntrs volesti walk walker walker wARMASVp wARMASVp waspr waspr waterlevel watson watson WaveSampling WaveSampling wbacon wbacon wCorr wCorr wdnet wdnet WeibullR WeibullR weibulltools weibulltools WH WH winsorize wishartinference wishartinference womblR womblR WRI wSIR wv wv XDNUTS xplaineff yuima yuima zoomerGP ZVCV ZVCV |
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| opencv | Computer vision Image Codecs library | libopencv-videoio-dev
libopencv-shape-dev
libopencv-flann-dev
libopencv-imgcodecs-dev
libopencv-imgproc-dev
libopencv-objdetect-dev
libopencv-core-dev
libopencv-calib3d-dev
libopencv-video-dev
libopencv-contrib-dev
libopencv-features2d-dev
libopencv-highgui-dev
libopencv-photo-dev
| aznyan opencv opencv opencv rip.opencv rip.opencv VoltRon VoltRon |
|---|
| openjdk | OpenJDK Java runtime, using Hotspot JIT | openjdk-25-jre-headless
| Achilles admetshiny AgroTech alabaster.sfe AntAngioCOOL AntAngioCOOL AQEval AQEval AQLTools arulesNBMiner arulesNBMiner aslib aslib Avionic24 AWR AWR AWR.Kinesis AWR.Kinesis babette babette bartMachine bartMachine bartMachineJARs bartMachineJARs bartMan bartXViz bartXViz BASiNET beastier beastier BeastJar BeastJar blendR blendR bmggum bmggum bnpa boilerpipeR boilerpipeR BridgeDbR CBSr CBSr Characterization Characterization CHRONOS CirceR CirceR CohortGenerator CohortGenerator CohortIncidence CohortIncidence CohortMethod CohortMethod CommonDataModel comunicacion ConvertPar ConvertPar corehunter coreNLP Crossover Crossover d4t4tur DaMiRseq DatabaseConnector DatabaseConnector DatabaseConnectorJars DatabaseConnectorJars DataClean DataClean DataLoader DataQualityDashboard DataQualityDashboard DecorateR DecorateR Deducer DeepPINCS denguedatahub denguedatahub dialr dialr dialrjars dialrjars DIETCOST DIETCOST DIscBIO DIscBIO disclosuR disclosuR DIZutils DIZutils DQAgui DQAgui DQAstats DQAstats drawsample drawsample dsa ELT enmSdmX enmSdmX eprscope esATAC Eunomia Eunomia EvidenceSynthesis EvidenceSynthesis evoper evoper fable.rjd3 fastreeR FastRet FastRet FeatureExtraction FeatureExtraction fioRa fioRa FishEconProdOutput fsdaR fsdaR FSelector FSelector GARS GenProSeq geogenr geogenr ggdemetra ggdemetra ggdemetra3 GGUM GGUM glmulti gMCP gMCP GreedyExperimentalDesign GreedyExperimentalDesign GreedyExperimentalDesignJARs GTbasedIM helloJavaWorld hive InflectSSP informativeSCI informativeSCI InSilicoVA InSilicoVA intamapInteractive IntegratedLearner InterfaceqPCR InterpretMSSpectrum InterpretMSSpectrum iplots islify ISM JATSdecoder JATSdecoder JavaGD JavaGD JGR jNSMR joinXL joinXL lilikoi LipinskiFilters llama LLM loa loa mailR mailR mallet mallet massSpectrometryR matchingMarkets matchingMarkets mauricer mauricer mcbette mcbette metabinR MetabolomicsBasics MetabolomicsBasics methodical miRSM mMARCH.AC moodef moodef MorbiditySpainR MS2Quant MultiGroupSequential mutossGUI mwa mwa NLPutils nodeSub nodeSub odkr OdysseusCharacterizationModule OdysseusPathwayModule OdysseusSurvivalModule OhdsiReportGenerator OhdsiReportGenerator OhdsiShinyAppBuilder oii OnassisJavaLibs openNLP openNLPdata OpenStreetMap OpenStreetMap openVA openVA OptimalRerandExpDesigns OSMscale OSMscale OSTA PatientLevelPrediction PatientLevelPrediction patRoon pems.utils pems.utils pguIMP pguIMP PheValuator PheValuator pubchem.bio publishTC publishTC qCBA qCBA qdap qdap r5r r5r r5rgui r5rgui rapidraker rapidraker RBioFormats rCBA rCBA rcdk rcdk rcdklibs rcdklibs rChoiceDialogs Rcurvep Rcurvep Relectoral Relectoral REPPlab REPPlab REPPlabShiny ResultModelManager ResultModelManager rexer rexer rflsgen rflsgen rgph rGroovy RH2 RH2 rJava rjd3bench rjd3bench rjd3bridge rjd3bridge rjd3filters rjd3filters rjd3highfreq rjd3highfreq rjd3jars rjd3jars rjd3nowcasting rjd3production rjd3production rjd3production rjd3providers rjd3providers rjd3revisions rjd3stl rjd3sts rjd3toolkit rjd3toolkit rjd3tramoseats rjd3tramoseats rjd3workspace rjd3workspace rjd3x11plus rjd3x13 rjd3x13 rjd3xjars rjd3xjars RJDBC RJDBC RJDemetra RJDemetra rjdmarkdown rjdmarkdown rjdqa rjdqa rjdworkspace rjdworkspace RJSDMX RJSDMX rkafkajars RKEA RKEAjars RMassBank rmcfs rmelting RMOA RMOAjars RNetLogo RNetLogo ROhdsiWebApi rolap rolap rOmniDriver rQSAR rRDP rrepast rrepast RSCAT RSentiment RSP rsubgroup rviewgraph RWeka RWekajars RxnSim RxnSim sarks SAvalidation scagnostics scagnostics scider SELEX SelfControlledCaseSeries SelfControlledCaseSeries SelfControlledCohort SelfControlledCohort SensMap SensMap shelltrace shelltrace simplace simplace simplaceUtil sjdbc slowraker slowraker SpatialOmicsOverlay spcosa SQLove SQLove SqlRender SqlRender staplr staplr stops stops streamMOA streamMOA surveycto survHE survHE survHEhmc survHEinla swipeR swipeR tableParser tableParser tabulapdf tabulapdf tpfp tssim TumourMethData tvCoef vacalibration vacalibration VAExprs venneuler venneuler wallace wallace warmthcompetence warmthcompetence WhatsR WhatsR when when wordnet XLConnect XLConnect xlsx xlsx xlsxjars xlsxjars YARF YARFJARs |
|---|
| openjpeg2 | JPEG 2000 image compression/decompression library | libopenjp2-7-dev
| divest divest |
|---|
| openmp | GCC OpenMP (GOMP) support library | | abclass abess abn abn acebayes ActiveLearning4SPM adaptIVPT adaptIVPT adelie adelie adimpro adjclust adjclust adlaplace adlaplace AdmixPoly admixtools ADMM ADMM admvn Aerith aftsem aftsem AGHmatrix AGHmatrix aifeducation aifeducation aihuman aihuman alcyon alcyon AllelicSeries AllelicSeries AlphaSimR AlphaSimR AMISforInfectiousDiseases AMISforInfectiousDiseases ANN2 ANN2 aorsf aorsf Apoderoides Apoderoides apollo approxOT approxOT arbor ARCensReg ARCensReg ARCokrig ARCokrig arcstat arcstat arkhaia arkhaia asmbPLS asmbPLS ASV AsyPeer AsyPeer atakrig ATNr audio.whisper autoFRK aws awsMethods balnet BamScale BamScaleR banditpam banditpam bandle Banksy BAREB BART bartcs bartcs BASiCS batchmix Bayenet Bayenet BayesChange BayesChange BayesDecon bayesefa bayesEO bayesEO BayesMallows BayesMallows BayesMallowsSMC2 bayesPO bayesPO BayesPPD BayesRegDTR BayesRegDTR BayesSpace BayesSUR BayesSUR BayesSUR BayesSurvive BayesSurvive baygel baygel bayNorm BCClong BCClong BCEE BDgraph bdrc bdrc BEKKs BET BGData BGData bgns bgns bhetGP BHMSMAfMRI BHMSMAfMRI BHSBVAR BigDataStatMeth bigergm biglasso biglasso bigsnpr bigsnpr bigstatsr bigstatsr binspp binspp biosensors.usc biosensors.usc BKP BKP blatent blatent Blend Blend blvim blvim BMIselect BMIselect BNPmix BNPmix bonsaiforest bpnreg bpnreg bpr bpvars bpvars BradleyTerryScalable BranchGLM BranchGLM brif BRISC brmsmargins brmsmargins brnn bssm bssm bsvars bsvars bsvarSIGNs bsvarSIGNs BTtest BTtest Buddle BUSseq bvars bvars bvhar bvhar CAESAR.Suite capybara carat CARDspa cartogramR CausalGPS CausalGPS causl CautiousLearning caverify cayleyR cayleyR ccImpute CDatanet CDatanet celda CelliD CellODE CellOracleR CellProgramMapper cellWise CFC cheapr cheapr choicer choicer chouca circlus circlus circtree circumplex circumplex cIRT cIRT cito clubpro clubpro ClusterR ClusterR CLVTools CLVTools cmfilter cmfrec cmfrec CMGFM CMGFM COAP COAP collapse collapse Colossus Colossus combreg combreg COMIX COMMOTR CompositionalZADR conleyreg conleyreg conos conos conquer conquer ConsTree ConsTree coop coop cophescan cophescan copre copre Coreset Coreset coresynth coresynth corMLPE corMLPE cosimmr cosimmr CoSMoS CoSMoS countdata CPGLIB CPGLIB cppdoubles cppSim cppSim craftgrn craftgrn crctStepdown crqa crqa csdR CSeQTL CSeQTL CspStandSegmentation CspStandSegmentation ctl ctmcd cTMed cTMed cusna CVXR CVXR CWT CWT daedalus dann dann data.table dataprep dataprep dccpp dccpp dcurver dcurver DDRTree2 deadwood deadwood DECIPHER deepgp defm defm deform deform DegNorm Delaporte Delaporte DeMixT densityratio densityratio densvis DepthProc DepthProc depthR depthR deseats deseats desla desla devianLM dexter dexter dfmta dicepro dicepro DIFM dipm DirichletRF DirichletRF distributions3 distributions3 DLCA dlmtree dlmtree dmbc dmbc DMCfun dmrfit dmrfit dMrs DNABarcodes dnn dotCall64 DOVE drclust dream dream dsem dsem dust dust2 dynsbm e2tree e2tree Eagle Eagle ebTobit ebTobit echoice2 echoice2 echos echos economiccomplexity edgeR EDI EDI eDMA eDMA eegUtils EFAfactors eFCM ELAplus elfDistr elfDistr elgbd elgbd elmNNRcpp elmNNRcpp emBayes emcAdr emIRT emIRT empichar empichar energymethod Entropic.Scree enviGCMS enviGCMS epigraHMM epigrowthfit epigrowthfit EpiLPS EpiLPS epiworldR epiworldR ergmito ergmito errum errum ETAS ETAS evgam evgam evgmrf evgmrf evinf evinf exactcond exactcond excursions excursions exdqlm exdqlm exnexSurv exnexSurv expmAction expQ2 expSBM fabMix faissR fanc fastadi fastadi fastcpd fastcpd fastGLCM fastGLCM FastHamming FastJM fastJT FastKRR FastKRR fastLink fastLink fastLISA fastLISA fastliu fastlpr fastphylosig fastphylosig fastplyr fastpos fastpos fastrda fastsae fastsae fChange fChange fdacluster fdacluster fdaSP fdasrvf fdasrvf fdesigns fDMA fDMA FDOTT fedmatch fEGarch FENmlm FGLMtrunc fHMM fHMM fido fido filling filling fixes fixes fixest fixest flexBART flexBART flexCountReg FlexRL float float FLORAL FLORAL FLOWMR flownet flownet fmriAR fmrigds fmrihrf fmrilatent fmrilss fmrireg fpROC fpROC frailtypack FRESA.CAD fRLR fRLR fstcore funcharts funcharts funMoDisco fwildclusterboot GauPro GauPro gbm3 gbm3 gcmrec gcmrec GCSM GCSM gedi2 gedi2 GEModelR GeneScape genie genie geocmeans geocmeans geocomplexity geocomplexity GeoDiff geommc geommc GeoModels ggmlR ggmlR ggsc gjam glinternet gllvm gllvm glmmrOptim glmmrOptim glmmTMB glmmTMB gloBFPr gloBFPr gmGeostats GMTM GMTM gmvjoint gmvjoint goat goat goftte gower gower GPBayes GPBayes gpboost GPCMlasso GPFDA GpGp GpGp GPTCM GPTCM GPvecchia graphicalEvidence grasps grasps grattan grattan grattanInflators grattanInflators gravmagsubs greed greed GridOnClusters gridOT groupedSurv gtfstools gtfstools gtfstools GWmodel hann hann hashr hashr hawkesbow hawkesbow hdbcp hdbcp HDclust hdflex hdflex HDNRA HDNRA hdpGLM HDTD healthyAddress healthyAddress hgwrr hgwrr hibayes hibayes highfrequency highfrequency HistDAWass HistDAWass hkevp hkevp hmcdm hmcdm hpsreg hrt HRTnomaly HRTnomaly HSAR hsphase HTLR HTLR huge huge hutilscpp hutilscpp iAR iAR IBGS IBGS iBMQ ICEbox ICEbox iClusterVB iClusterVB icr icr icsp2 idefix idefix iDOVE ieTest iglm iglm iglm image.CornerDetectionHarris image.CornerDetectionHarris image.libfacedetection image.libfacedetection imager imager immApex imply imply inferCSN influenceR influenceR infomap interep IntervalCensoredMultistateR2 intRinsic intRinsic intrinsicFRP intrinsicFRP intsurv intsurv invgamstochvol ipsecr ipsecr iq iq IRanges IRanges irls IRTM iscream ISoLDE isotree isotree JANE JANE JMbayes JMbayes JMbayes2 JMbayes2 jmcm jmcm joineRML joineRML jrSiCKLSNMF jrSiCKLSNMF kalmanfilter kendallknight KernelICA KernelKnn KernelKnn kimfilter kissmig kit kit kmBlock kohonen ksm ksm LA laGP lame lame lamle Langevin lasR lavacreg lavacreg lazymatrix lazymatrix lbfgsb3c lbfgsb3c LCPA ldsep ldsep ldt learner learner leontief lessSEM lessSEM lfl lfl lidR lidR lidRalignment lifecontingencies lifecontingencies lightgbm limma lit lit llamaR llamaR lmmprobe lmmprobe Lmoments LOCOM2 LOCOM2 lotri lotri lowmemtkmeans lowmemtkmeans LPStimeSeries lsirm12pl lsReg lstar lstar ludic ludic MADMMplasso MADMMplasso maotai maotai marble marble MarginalMaxTest MarginalMaxTest markerpen markerpen mashr mashr matchingMarkets matchingMarkets matrixCorr matrixCorr matrixdist matrixdist MatrixExtra MatrixExtra mccca mccca MDCcure MDCcure MDFS mdgc mdgc meanr meanr meanShiftR meanShiftR melt melt methFuse methFuse methimpute methylclock mev mev MFSD mgcca mgcv mgcv mgsa miceFast miceFast mig mig miic miic miloR minimaxALT minimaxALT miniPCH miniPCH minirocketR mirt mirt mispitools mispitools missoNet missoNet mixedBayes mixedBayes mixgb mixgb MixMatrix MixMatrix mixture mlpack mlpack mlrv mlstm mlstm mmand mmand mmcm mmcm MMGFM MMGFM mmpca mmpca mnorm modelSelection modelSelection modsem modsem moire moire mombf MonotonicityTest MonotonicityTest Morpho Morpho motifcounter moveMMPP mpmi mpoxseir MR.Corr2 MR.CUE MR.LDP MR.RGM MR.RGM mrf2d mrf2d mrfse mritc mritc mRMRe mRMRe MRPATH mrtsSphere mrtsSphere MultiCOAP MultiCOAP MultiEFM MultiEFM multilink multilink MultiModalR MultiModalR multinomialLogitMix multinomineq multinomineq MultiRFM MultiRFM multiScaleR multiScaleR multivar MultOrdRS MultOrdRS mutscan mutualinf mutualinf mvalpha mvalpha mvMAPIT mvMAPIT mvnfast mvnfast mvrsquared mvrsquared netClust netdiffuseR netdiffuseR nethist nethist NetMix NetMix NetworkChange NetworkChange NetworkDistance NetworkDistance neurocluster neuroim2 neuroim2 nftbart ngme2 ngme2 nlmeVPC nlmixr2est nlmixr2est NLPwavelet NLPwavelet nmslibR nmslibR nnmf nnsolve nnsolve nonneg.cg nonprobsvy nonprobsvy normr not NOVA NPCirc NPflow NPflow nQuack nQuack nrMCmix NScluster o2plsda o2plsda OccurrenceCleaner odin2test oeli oeli oem oem ohoegdm ohoegdm ompdetect openfhe.R openfhe.R OpenImageR OpenImageR OpenMx OPSR OPSR OptimalBinningWoE OptimalBinningWoE OptOR orthoDr orthoDr OutcomeWeights OutcomeWeights outliertree outliertree PAFit PAFit PAGFL PAGFL pagoda2 pagoda2 pairscale pairscale panglm PANPRSnext parmigene parmigene PartialNetwork PartialNetwork patRoon PCMRS pense pense pgacmdr pgKDEsphere phenofit phenofit phutil phutil PhysioAnalysis PhysioPreprocess pimeta pimeta PLFD PLFD pliman pliman plmmr plmmr poismf poismf pompp pompp poppr poppr ppforest2 ppforest2 PPMR PPMR pprof pprof pqrBayes pqrBayes praznik praznik probe probe ProfileGLMM ProfileGLMM profoc profoc ProjectionBasedClustering prospectr prospectr proximetricsR proximetricsR psbcSpeedUp psbcSpeedUp pscl PSGD PSGD psqn psqn psychonetrics psychonetrics PTE PTE qch qfratio qfratio qgg qtlpoly quadrupen quadrupen qualpalr qualpalr QuantileModels QuantileModels QuantilePeer QuantilePeer Quartet Quartet QUBIC QuickBLAST quitefastmst quitefastmst Racmacs Racmacs ramr randomForestRHF randomForestRHF RandomForestsGLS randomForestSGT randomForestSGT randomForestSRC randomForestSRC rangen rangen rasterKernelEstimates rasterKernelEstimates ratematrix ratematrix rbcpd Rborist rbridge rbridge rCausalMGM RcppArmadillo RcppArmadillo RcppBlaze RcppBlaze RcppColors RcppColors RcppEigen RcppEnsmallen RcppEnsmallen RcppML RcppML rcppmlpackexamples rcppmlpackexamples RcppPlanc RcppPlanc RcppRoll RcppRoll rcpptimer rcpptimer RcppTrust RcppTrust Rdimtools Rdimtools rdist rdist ReAD recometrics recometrics recosystem recosystem reda reda redist redist reglogit regmhmm regmhmm regMR regMR regnet regnet rehh remify remify remotePARTS remotePARTS remstimate remstimate rENA resemble resemble reservr reservr Rfast Rfast Rfast2 rFerns rFerns RhpcBLASctl RhpcBLASctl ribiosGSEA ridgeBART ridgeBART Riemann Riemann RiemBase RiemBase Rlibeemd rlibkriging rlibkriging Rlinsolve Rlinsolve Rlof RLT RLT RMFM RMFM rmgarch rmgarch rmorie RMR.ICP RMSS RMSS rMVP rMVP Rnanoflann RNiftyReg RNiftyReg roben roben roboBayes robustHD robustHD robustmatrix rofanova rofanova ROKET roll roll rolleigen rolleigen rolloptim rolloptim rollshap rollshap rpart.LAD rpc rpc rpf RPhosFate RPhosFate RprobitB RprobitB rrpack rrum rrum RSC RSO Rsomoclu rsparse rsparse RSTr RSTr rsvddpd rsvddpd rTLS rTLS RTMBp rtorf rtrend rtrend Rtsne Rtsne rupturesRcpp rupturesRcpp Rvcg Rvcg RWNN RWNN rxode2 rxode2 rxode2ll rxode2ll s2net s2net SAGMM SAGMM SAM SAM sanba sanba SANple SANple SANvi SANvi SBmedian SBmedian scalablebayesm ScatterDensity ScatterDensity scClustEval sccore sccore scde scip scip scNPM scNPM scorecraft scorecraft SCORPION scregclust scregclust sd2R sd2R SDALGCP2 SDALGCP2 seine SelectBoost.gamlss SelectBoost.gamlss SelectionTools sentometrics sentometrics sentopics sentopics seqHMM seqHMM serrsBayes serrsBayes sgdGMF sgdGMF sgs sgs shapr shapr ShrinkCovMat ShrinkCovMat SHT SHT sievePH SiFINeT SigBridgeRUtils simer simer SimInf SimInf SIMplyBee SIMplyBee simStateSpace simStateSpace singR sircovid sitmo sitmo sits sits slcm slcm sleev sleev slideimp SLmetrics SLOPE SLOPE smarter SMASH smer smer smoots snpsettest snpsettest snreg snreg sommer sommer sox spAbundance spAbundance SpaceTimeBSS SpaCOAP SpaCOAP spaMM spanner spanner SparseArray SparseArray sparseDFM sparseLTSEigen sparseLTSEigen sparsevb sparsevb sparseVCBART sparseVCBART spaths spaths SpatialBSS SpatMCA SpatMCA SpaTopic SpaTopic SpatPCA SpatPCA spBayes spBayes spBPS spBPS specs spEDM spEDM spfa spFFBS spFFBS spifa spifa spinBayes spinBayes SpliceWiz splikit splikit SPlit SplitGLM SplitGLM SplitReg SplitReg splmm spMC spnn spnn spNNGP spNNGP spOccupancy spOccupancy SPOTlight springer springer squat squat ssgraph sshist sshist sstvars sstvars STAREG statespacer statespacer statgenGWAS statgenGWAS statgenQTLxT StatRec STB StealLikeBayes StealLikeBayes stelfi stelfi StempCens stepSplitReg stepSplitReg stLMM stLMM StochBlock stochQN stochtree stochtree stpphawkes stpphawkes stratEst stratEst STRIDER stringdist stringdist StuteTest subrank SuperpixelImageSegmentation SuperpixelImageSegmentation surtvep surtvep survkl survkl survrec survrec susieR svars svars SVP sylcount sylcount synergyMixR synergyMixR SynExtend T4cluster T4cluster T4transport T4transport tabularMLC tabularMLC tagtools tagtools tci tci tclust tclust tcv TDAkit TDAkit TDAvec TDAvec tEDM textTinyR textTinyR tfarima tfarima tidylda tidylda tidypopgen tidypopgen tlars tlars TMB TMB tmvtnsim topocast topocast TPmsm TPmsm trajeR trajeR tramME tramME transfR transitreg transport transport TreeDist TreeDist treehunt treehunt treeSS treeSS TruncatedNormal TruncatedNormal tulpa tulpa tulpaObs tulpaRatio tvR tvR twingp twinning UComp unmarked unmarked unmarked UPCM updog updog varPro varPro VARSELECTEXPOSURE VARtests VCBART VCBART VeccTMVN VeccTMVN VectorForgeML VectorForgeML vectra vectra vein vein VEwaningVariant VIC5 VIC5 VIM VIM visPedigree visPedigree vistla vistla VMDecomp VMDecomp vMF vMF vntrs vntrs vostokR vostokR walk watson watson wbacon wbacon wbsd wcc wCorr wCorr wordspace wordspace WRShd xbioclim xbioclim XDNUTS xgboost xgboost XOMultinom XOMultinom ycevo ycevo yersinia |
|---|
| openmpi | High performance message passing library | | bigGP bigGP npRmpi pbdMPI pbdMPI pbdSLAP pbdSLAP Rhpc Rhpc Rmpi |
|---|
| openssl | Secure Sockets Layer toolkit | libssl-dev
| alabaster.base arcgisplaces arcgisplaces arrow arrow beachmat.hdf5 BigDataStatMeth chihaya cozip CytoML drogonR drogonR DropletUtils EikonDownloader epigraHMM flowCore flowWorkspace gdscloud h5mread methylclock mgcca mongolite mongolite msoc mzR ncdfFlow ondisc ondisc openssl openssl pizzarr PKI PKI readspss rhdf5 rhdf5 rhdf5 RSclient RSclient Rserve Rserve rtracklayer s2 s2 smer smer stPipe taco telegramR telegramR tynding websocket websocket |
|---|
| pangomm | C++ Wrapper for pango | libpangomm-1.4-dev
| HilbertVisGUI |
|---|
| pcre2 | New Perl Compatible Regular Expression Library | libpcre2-dev
| RcppCWB RcppCWB stringfish stringfish |
|---|
| poppler | PDF rendering library | libpoppler-glib-dev
libpoppler-cpp-dev
| pdftools pdftools Rpoppler |
|---|
| portaudio19 | Portable audio I/O C++ bindings | portaudio19-dev
| openmpt |
|---|
| postgresql | PostgreSQL C client library | libpq-dev
| adbcpostgresql adbcpostgresql RPostgres RPostgres RPostgreSQL RPostgreSQL |
|---|
| proj | Cartographic projection library | libproj-dev
| bigcurve gdalBindings ICESat2VegR ICESat2VegR lwgeom lwgeom PROJ PROJ proj4 proj4 projr sf sf terra terra vol2birdR vol2birdR |
|---|
| protobuf | Compiler for protocol buffer definition files | protobuf-compiler
libprotobuf-dev
| bigrquerystorage bigrquerystorage cld3 cld3 otelsdk otelsdk pjrt protolite protolite RProtoBuf RProtoBuf tfevents tfevents |
|---|
| quantlib | Quantitative Finance Library | libquantlib0-dev
| RQuantLib RQuantLib |
|---|
| redland | Redland Resource Description Framework (RDF) library | librdf0-dev
| redland redland |
|---|
| sqlite3 | SQLite 3 shared library | libsqlite3-dev
| adbcsqlite adbcsqlite seqminer seqminer |
|---|
| suitesparse | Sparse LU factorization library | libsuitesparse-dev
| rbff sparselu sparselu |
|---|
| systemd | Libudev shared library | libudev-dev
| axR |
|---|
| tcl | Tcl (the Tool Command Language) v8.6 | libtcl8.6
| tkrplot |
|---|
| tesseract | Tesseract OCR library | libtesseract-dev
| tesseract tesseract |
|---|
| tiff | Tag Image File Format (TIFF) library | libtiff-dev
| Cairo Cairo cito ijtiff ijtiff imager imager ragg ragg tiff tiff unigd unigd |
|---|
| tk | Tk toolkit for Tcl and X11 v8.6 - run-time files | libtk8.6
| tkrplot |
|---|
| udunits | Library for handling of units of physical quantities | libudunits2-dev
| RNetCDF RNetCDF udunits2 units units |
|---|
| unixodbc | ODBC Driver Manager library for Unix | unixodbc-dev
| odbc odbc RODBC |
|---|
| xz-utils | XZ-format compression library | liblzma-dev
| bamsignals csaw deepSNV DiffBind diffHic epialleleR FLAMES h5vc iscream jackalope jackalope maftools methylKit mitoClone2 podkat QuasR raer Rhtslib Rsamtools scPipe SingleMoleculeGenomicsIO VariantAnnotation vcfppR vcfppR |
|---|
| zeromq3 | Lightweight messaging kernel | libzmq3-dev
| clustermq clustermq pbdZMQ pbdZMQ rzmq rzmq |
|---|
| zlib | Compression library | zlib1g-dev
| affyio affyPLM alabaster.base BamScale BamScaleR bamsignals bigsnpr bigsnpr BinaryDosage bio3d birp BPCells cmtkr cmtkr cpp11bigwig cpp11bigwig csaw cytome data.table datasetjson datasetjson DDIwR DDIwR deepSNV DEploid DEploid DEploid.utils devEMF devEMF dgread DiffBind diffHic drogonR drogonR epialleleR FLAMES gaston GenomicDataStream gesel gmapR GMMAT GMMAT GRAB h5vc haven haven HiCDCPlus HiCDOC HiCParser hipread hipread iscream jackalope jackalope knowYourCG ksTFL lstar lstar maftools makecdfenv MethScope methylKit milorGWAS misha misha mitoClone2 mongolite mongolite mRpostman mRpostman mutscan NanoMethViz ndjson ndjson neuroim2 neuroim2 oligo panpathAudit patRoon pgenlibr podkat qio qio qpdf qpdf QuasR raer rbedrock rbedrock RcppCNPy RcppCNPy readspss Rfastp Rgraphviz Rhtslib rmatio rmatio Rminibwa Rmmquant rmoriebricklayer rmoriebricklayer rmoriedata rmoriedata RNifti RNifti Rpgen Rsamtools Rsubread rtracklayer scPipe screenCounter SeqArray seqinr seqinr seqminer seqminer ShortRead Signac Signac SingleMoleculeGenomicsIO snpStats stPipe strawr strawr tidypopgen tidypopgen transmogR unigd unigd VariantAnnotation VCFArrow VCFArrow vcfppR vcfppR vcfR vcfR vol2birdR vol2birdR writexl writexl XVector yyjsonr yyjsonr zlib |
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