Library	Description	Debian (Headers)	Used by R packages
abseil	Extensions to the C++ standard library	libabsl-dev	bigrquerystorage bigrquerystorage
alsa-lib	Shared library for ALSA applications	libasound2-dev	harmonium
apparmor	Changehat AppArmor library	libapparmor-dev	RAppArmor RAppArmor unix unix
arpack	Fortran77 subroutines to solve large scale eigenvalue problems	libarpack2-dev	rlibkriging speakeasyR speakeasyR
bzip2	High-quality block-sorting file compressor library	libbz2-dev	bamsignals csaw deepSNV DiffBind diffHic epialleleR FLAMES GMMAT GMMAT h5vc jackalope jackalope maftools maftools methylKit mitoClone2 podkat QuasR raer Rhtslib Rsamtools scPipe seqminer seqminer TransView VariantAnnotation vcfppR vcfppR
c-blosc	High performance meta-compressor optimized for binary data	libblosc-dev	Rarr Rarr
cairo	Cairo 2D vector graphics library	libcairo2-dev	Cairo Cairo gdtools gdtools rsvg rsvg unigd unigd
clp	Coin-or linear programming solver	coinor-libclp-dev	pcaL1 rcbc
coinor-cbc	Coin-or branch-and-cut mixed integer programming solver	coinor-libcbc-dev	rcbc
coinor-symphony	COIN-OR solver for mixed-integer linear programs	coinor-libsymphony-dev	lpsymphony Rsymphony Rsymphony
coinutils	COIN-OR collection of utility classes	coinor-libcoinutils-dev	rcbc
curl	Easy-to-use client-side URL transfer library	libcurl4-openssl-dev	arrow arrow bamsignals csaw curl curl deepSNV DiffBind diffHic epialleleR FLAMES h5mread h5vc jackalope jackalope maftools maftools methylKit mitoClone2 podkat QuasR raer RCurl rhdf5 rhdf5 Rhtslib Rsamtools rtracklayer scPipe strawr strawr TransView VariantAnnotation vcfppR vcfppR
cyrus-sasl2	Cyrus SASL authentication abstraction library	libsasl2-dev	mongolite mongolite
ffmpeg	FFmpeg library containing media filters	libavfilter-dev	av av
fftw3	Library for computing Fast Fourier Transforms	libfftw3-dev	bioacoustics bioacoustics cartogramR diversitree diversitree fftw fftwtools fftwtools image.CannyEdges image.CannyEdges imager imager KSgeneral MFPCA MFPCA poisbinom poisbinom PoissonBinomial PoissonBinomial PoissonMultinomial qqconf qqconf ravetools ravetools Rssa Rssa spate spate specklestar spFW SuperGauss SuperGauss
fluidsynth	Real-time MIDI software synthesizer	libfluidsynth-dev	fluidsynth fluidsynth
fontconfig	Generic font configuration library	libfontconfig-dev	devEMF devEMF systemfonts systemfonts
fortran	Runtime library for GNU Fortran applications		acepack bain bain basicspace BayesFM bayesQR bayesQR BFpack BFpack BFpack bgw bsamGP BTSR caRamel caRamel catch causalSLSE cglasso clinfun clinfun clusterCrit clusterCrit clusterCrit CohensdpLibrary CohensdpLibrary coxphf coxphf coxphw coxphw crimCV DAISIE DAISIE dBlockmodeling DCCA Delaporte Delaporte deSolve deSolve dfsaneacc dglars DirStats DirStats DMMF DNAcopy dsdp dsdp dtrSurv DySS EcoNetGen EcoNetGen EpiILMCT EpiILMCT eRm extremis facets FAS FAS fastcox fastcox fastkqr frailtypack frontier frontier gcdnet gcdnet GeneSelectMMD geoBayes gglasso gglasso glasso glinvci glinvci glmnet gmm gmm groupTesting growth growth grpnet gslnls gslnls HDtweedie Hmisc Hmisc iClusterPlus islasso JLPM JLPM KERE kerndwd KFAS KFAS ktweedie ktweedie lbfgsb3c lbfgsb3c lcmm lcmm limSolve LMest localgauss lorec LWFBrook90R LWFBrook90R mcr mcrPioda mcrPioda midasml midasml momentfit momentfit mpath mpath mpmi mpmi MSCMT multimode multitaper multitaper MultNonParam Nmix NormPsy NormPsy npregfast npregfast npROCRegression npsp npsp NScluster numOSL NuPoP oc oc oscar oscar PEcAn.BASGRA prefmod PropClust PRTree PWEALL qgg qgg r3PG r3PG RaschSampler RefBasedMI RefBasedMI restrend RGN RGN rms rmumps rmumps RobustAFT rrelaxiv rsae rsae rsofun rsofun SALES SALES seq2R seq2R sequoia sequoia slp sm SmoothHazard smwrQW sparsegl sparsegl sparsenet svd svd swdpwr SynExtend TensorClustering tmvtnorm tmvtnorm transfR TreeSim trend tripack tseriesEntropy tseriesEntropy tseriesTARMA TSSS TULIP twdtw twdtw VCA vegan vegan WLreg wnominate wsbackfit
freetype	FreeType 2 font engine	libfreetype-dev	Cairo Cairo devEMF devEMF gdtools gdtools ragg ragg rgl rgl showtext showtext sysfonts sysfonts systemfonts systemfonts textshaping textshaping
fribidi	Free Implementation of the Unicode BiDi algorithm	libfribidi-dev	textshaping textshaping
gdal	Geospatial Data Abstraction Library	libgdal-dev	gdalBindings gdalcubes gdalcubes gdalraster gdalraster ICESat2VegR lasR prepr rgdal rGEDIsimulator sf sf terra terra vapour vapour
geos	Geometry engine for Geographic Information Systems	libgeos-dev	apcf apcf exactextractr exactextractr lwgeom lwgeom rgeos sf sf terra terra
glib	GLib library of C routines	libglib2.0-dev	keyring keyring RcppCWB RcppCWB Rpoppler rsvg rsvg
glibc	GNU C Library: Shared libraries	libc6-dev	bgx GeoModels GeoModels gslnls gslnls IAPWS95 IAPWS95 mongolite mongolite PEcAn.BASGRA pingr pingr r3PG r3PG SAPP SPECIES
glpk	Linear programming kit with integer (MIP) support	libglpk-dev	glpkAPI igraph igraph leidenbase leidenbase rDEA rDEA Rglpk Rglpk sdcTable
gmp	Multiprecision arithmetic library	libgmp-dev	Apollonius Apollonius arrangements arrangements corels corels FLSSS FLSSS GeoFIS gmp hypergeo2 hypergeo2 interpolation interpolation jack jack prepr qspray qspray RationalMatrix RationalMatrix ratioOfQsprays ratioOfQsprays rcdd RcppAlgos RcppAlgos RcppBigIntAlgos RcppBigIntAlgos resultant resultant Rmpfr Rmpfr sbrl surveyvoi symbolicQspray symbolicQspray symengine symengine TDA
gpgme	GPGME - GnuPG Made Easy	libgpgme-dev	gpg gpg
grpc	High performance general RPC framework	libgrpc-dev libgrpc++-dev	bigrquerystorage bigrquerystorage
gsl	GNU Scientific Library (GSL)	libgsl-dev	abn abn AMOUNTAIN BayesChange BayesChange BayesVarSel BayesVarSel bbl BNSP catSurv catSurv ccfindR cit cit CLVTools CLVTools coga coga DirichletMultinomial diversitree diversitree dynr eaf eaf econetwork excursions excursions fingerPro flan flan flowPeaks frailtyMMpen frailtyMMpen fRLR fRLR GeneralizedWendland GLAD GPBayes GPBayes gsl gsl gslnls gslnls GWmodel3 hgwrr hgwrr hSDM hSDM iBMQ immunoClust island jSDM jSDM landsepi LCMCR Libra libstable4u libstable4u lnmixsurv lnmixsurv markets mashr mashr mBvs mcrPioda mixcat mixture mmpca mmpca monoreg mvabund mvabund mvst PEPBVS PICS PING psbcGroup QF rcontroll rcontroll RcppGSL RcppGSL RcppZiggurat RcppZiggurat RDieHarder RDieHarder rGEDIsimulator ridge ridge RJMCMCNucleosomes RKHSMetaMod Rlibeemd Rlibeemd rnetcarto rnetcarto rtmpt rtmpt sbrl SemiCompRisks shrinkTVP SimInf SimInf simplexreg smam smam spaMM SPARSEMODr SPARSEMODr stpphawkes survSNP SymTS topicmodels VBLPCM vol2birdR vol2birdR
harfbuzz	OpenType text shaping engine	libharfbuzz-dev	Cairo Cairo textshaping textshaping
hdf5	HDF5 High Level runtime files - serial version	libhdf5-dev	BPCells hdf5r hdf5r RcppPlanc rGEDIsimulator vol2birdR vol2birdR
hiredis	Minimalistic C client library for Redis	libhiredis-dev	heartbeatr RcppRedis RcppRedis redux redux
hwloc	Hierarchical view of the machine	libhwloc-dev	RcppPlanc
icu	International Components for Unicode	libicu-dev	Cairo Cairo stringi stringi
imagemagick	Low-level image manipulation library	libmagick++-6.q16-dev libmagickwand-6.q16-dev libmagickcore-6.q16-dev	magick magick
jags	Just Another Gibbs Sampler for Bayesian MCMC	jags	abmR abn abn afthd agRee altmeta ArchaeoChron auRoc BACCT bacistool BaHZING baker baker bamdit BANOVA banter banter basksim basksim BayesCACE bayescount bayescount BayesGWQS BayesianMediationA bayesmix bayesMRM BayesOrdDesign BayesPostEst BayesPostEst BayesRS BayesRS BayesTwin BayesTwin BayLum BayLum BCHM bdribs beaver beaver beer BEND BEND BeQut bfw bfw bhmbasket bipd bipd blrm bnma bnma boral bsam bsam BTSPAS BTSPAS CCTpack CCTpack CNVrd2 CoDaLoMic COMBO COMBO cosimmr cosimmr crmPack crmPack crmPack crossnma crossnma crputils CRTspat CRTspat CruzPlot CruzPlot dclone dclone dcmle dcmle DM doublIn doublIn dreamer dreamer dscoreMSM EBASE EBASE EcoDiet EcoDiet eefAnalytics eefAnalytics eivtools eivtools eoa3 ern eSIR ewoc ewoc EWOC.Comb gbs2ploidy gconsensus gemtc gemtc gemtcPlus glossa glossa groupWQS handwriter handwriter handwriterApp handwriterApp handwriterRF handwriterRF hbbr hdbma HDSpatialScan HETOP HETOP HiLDA historicalborrow IIVpredictor infercnv IsotopeR IsotopeR isoWater jagshelper jagshelper jagstargets jagstargets JAGStree JAGStree jagsUI jagsUI jarbes JMbayes JMbayes jmbr JointAI JointAI lcra lcra lira longit MADSEQ MBNMAdose MBNMAdose MBNMAtime MBNMAtime mbpp mcmsupply mcmsupply mcp mcp midas2 midas2 MigConnectivity MigConnectivity miscF missingHE missingHE MixSIAR MixSIAR morse MPTmultiverse MPTmultiverse msaeHB NCC NCC neojags neojags nichetools nichetools NMADiagT NobBS NobBS occumb occumb optimalThreshold ordinalbayes ordinalbayes ordinalRR pcnetmeta PEcAn.all PEcAn.assim.batch PEcAn.BIOCRO PEcAn.data.land PEcAn.ED2 PEcAn.LDNDC PEcAn.LINKAGES PEcAn.MA PEcAn.photosynthesis PEcAn.priors PEcAn.SIPNET PEcAn.uncertainty PEcAn.workflow PEcAnAssimSequential PEcAnRTM Petersen Petersen pexm pexm phase1PRMD phase1PRMD phase1RMD phase1RMD phenoCDM pivmet pivmet popbayes popbayes PottsUtils prevalence prevalence psborrow psborrow PVAClone PVAClone R2jags R2jags RcmdrPlugin.RMTCJags remiod remiod reslr reslr rfPermute rfPermute rjags rnmamod rnmamod RoBMA RoBMA RoBSA RoBSA RobustBayesianCopas runjags saeHB saeHB.ME saeHB.ME.beta saeHB.ME.beta saeHB.panel saeHB.panel saeHB.panel.beta saeHB.panel.beta saeHB.spatial saeHB.spatial saeHB.twofold saeHB.twofold saeHB.unit saeHB.unit saeHB.ZIB SAME scDECO scDECO selectKSigs SeqFeatR sharx sharx SIBER SIBER simmr simmr snSMART snSMART sprex sprex ssifs ssifs strataG SurviMChd swfscAirDAS swfscAirDAS swfscDAS swfscDAS swfscMisc swfscMisc TreeBUGS TreeBUGS tRophicPosition UHM UHM unmconf vICC vICC zoib
jq	Lightweight and flexible command-line JSON processor	libjq-dev	jqr jqr
libarchive	Multi-format archive and compression library	libarchive-dev	archive archive
libdeflate	Fast, whole-buffer DEFLATE-based compression and decompression	libdeflate-dev	GMMAT GMMAT MAGEE MAGEE pgenlibr
libgit2	Low-level Git library	libgit2-dev	gert gert git2r git2r
libglu	Mesa OpenGL utility library	libglu1-mesa-dev	lidRviewer rgl rgl
libglvnd	Vendor neutral GL dispatch library	libgl-dev	lidRviewer rgl rgl
libjpeg-turbo	Libjpeg-turbo JPEG runtime library	libjpeg-turbo8-dev	Cairo Cairo cpp11qpdf cpp11qpdf jpeg jpeg qpdf qpdf ragg ragg
libopenmpt	Module music library based on OpenMPT	libopenmpt-dev	openmpt openmpt openmpt
libpng	PNG library	libpng-dev	ggiraph ggiraph png png ragg ragg rgl rgl rvg rvg svglite svglite unigd unigd vdiffr vdiffr
librsvg	SAX-based renderer library for SVG files	librsvg2-dev	rsvg rsvg
libsbml	System Biology Markup Language library	libsbml5-dev	NetPathMiner rsbml
libsdl2	Simple DirectMedia Layer	libsdl2-dev	fluidsynth fluidsynth lidRviewer
libsecret	Secret store	libsecret-1-dev	keyring keyring
libsodium	Network communication	libsodium-dev	sodium sodium
libssh	Tiny C SSH library	libssh-dev	ssh ssh
libunwind	Library to determine the call-chain of a program	libunwind-dev	winch winch
libuv1	Asynchronous event notification library	libuv1-dev	httpuv httpuv httpuv
libwebp	Lossy compression of digital photographic images	libwebp-dev	webp webp
libx11	X11 client-side library	libx11-dev	Cairo Cairo imager imager rayrender rayrender rgl rgl tkrplot
libxcrypt	Libcrypt shared library	libcrypt-dev	Rserve Rserve
libxml2	GNOME XML library	libxml2-dev	CytoML igraph igraph leidenbase leidenbase NetPathMiner XBRL XML xml2 xml2 xslt xslt
libxslt	XSLT 1.0 processing library	libxslt1-dev	xslt xslt
libzstd	Fast lossless compression algorithm	libzstd-dev	fstcore GMMAT GMMAT MAGEE MAGEE pgenlibr qs qs qs Rarr Rarr seqminer seqminer
lz4	Fast LZ compression algorithm library	liblz4-dev	fstcore qs qs qs
mbedtls	Lightweight crypto and SSL/TLS library	libmbedtls-dev	nanonext nanonext
mecab	Libraries of Mecab	libmecab-dev	RcppMeCab RcppMeCab RMeCab
mpfr4	Multiple precision floating-point computation	libmpfr-dev	GeoFIS hypergeo2 hypergeo2 multibridge multibridge Rmpfr Rmpfr scModels surveyvoi symengine symengine
mysql	MySQL database client library	libmysqlclient-dev	RMariaDB RMariaDB RMySQL RMySQL
netcdf	Interface for scientific data access to large binary data	libnetcdf-dev	gdalcubes gdalcubes ncapi ncdf4 RNetCDF RNetCDF
nng	Lightweight Messaging Library	libnng-dev	nanonext
nodejs	Evented I/O for V8 javascript	libnode-dev	V8 V8
ocl-icd	Generic OpenCL ICD Loader	ocl-icd-opencl-dev	gpuMagic
onetbb	Parallelism library for C++	libtbb-dev	markets proxyC proxyC quanteda quanteda quanteda.textstats RcppParallel seededlda seededlda
openbabel	Chemical toolbox library	libopenbabel-dev	ChemmineOB
openblas	Optimized BLAS		abclass abclass abctools abctools abn abn acc acebayes ACEt ACEt ACSSpack actuar adaHuber adaHuber ADAPT adaptivetau adaptivetau ade4 ade4 ade4 adespatial adespatial adimpro adlift admixtools ADMM ADMM ADMMsigma ADMMsigma affyPLM aftgee aftgee aftsem aftsem ahaz ahMLE aihuman aihuman AllelicSeries AllelicSeries alpaca alpaca AlphaSimR AlphaSimR alqrfe Amelia anclik anMC anMC ANN2 ANN2 anominate AntMAN AntMAN aorsf aorsf ape ape apollo ARCensReg ARCensReg ARCokrig ARCokrig arfima arfima arrApply arrApply asmbPLS asmbPLS assist ASV ATNr autoRasch Avionic24 aws BalancedSampling BalancedSampling bama bama bamlss bamp bamp BANDITS bandle BAREB bark bark BAS BAS BASiCS basicspace baskexact baskexact BASSLINE batchmix batchmix Bayenet Bayenet BayesChange BayesChange BayesComm BayesComm bayescopulareg bayescopulareg bayesCureRateModel BayesDLMfMRI bayesDP bayesDP bayesEO bayesEO BayesFM bayesianVARs bayesianVARs bayeslm bayeslm bayesm BayesMallows BayesMallows BayesPPD BayesPPDSurv bayesQR bayesQR Bayesrel Bayesrel BayesReversePLLH BayesRGMM BayesSpace BayesSUR BayesSUR bayesSurv BayesSurvive bayesWatch bayesWatch baygel baygel bayMDS bayou BCClong BCClong BCEE bcf bcf BClustLonG bcROCsurface bcROCsurface BCSub bcv bcv BDgraph BEKKs betaBayes beyondWhittle BFpack BFpack BGGM BGGM BGLR BGVAR BGVAR BHMSMAfMRI BHMSMAfMRI BHSBVAR biClassify bife bife BIFIEsurvey BIFIEsurvey bigalgebra bigalgebra bigergm bigGP bigMap bigReg bigReg bigsnpr bigsnpr bigstatsr bigstatsr bigtime bigtime BigVAR BigVAR binaryGP binGroup2 biosensors.usc biosensors.usc blatent blatent Blend Blend bliss bliss blockmodels blockmodels BLPestimatoR bmabasket bmabasket bnlearn BNPmix BoltzMM BoltzMM bonsaiforest bootCT bootUR bootUR BOSSreg bpgmm bpnreg bpnreg bpr BPRMeth bqtl BradleyTerryScalable BranchGLM BranchGLM BRISC brmsmargins brmsmargins brnn bsamGP BSPBSS BSPBSS bspline bspline bssm bssm BSSprep bsvars bsvars bsvarSIGNs bsvarSIGNs BTLLasso BTSR BTtest BTtest Buddle bvarsv bvarsv bvartools bvartools BVSNLP CAESAR.Suite CAESAR.Suite carat causalSLSE causl ccaPP ccaPP cccp ccImpute cda CDatanet CDatanet CEC CEC CelliD cellWise CERFIT CERFIT cglasso cglm changepoints changepoints chngpt chngpt CholWishart CholWishart cinterpolate cinterpolate circlus CircSpaceTime CircSpaceTime circumplex circumplex cIRT cIRT clarabel clarabel clubpro clubpro ClusPred clusterCrit clusterCrit clusterCrit clusterMI ClusterR ClusterR ClusVis CLVTools CLVTools cmfilter cmfrec cmfrec CMGFM CMGFM COAP COAP coda.base coda.base colorednoise colorednoise combinIT combinIT COMIX communication complex complex complex compositions coneproj conleyreg conleyreg conos conos conos conquer conquer ContaminatedMixt CoOL coop coop copCAR corrcoverage cosimmr cosimmr Countr Countr covdepGE covdepGE covglasso CovRegRF CovRegRF covTestR covTestR CovTools CovTools CoxPlus coxrt coxrt cPCG CPE CPGLIB CPGLIB cplm cplm cpr cpr cpss cpss cqrReg crandep crandep crawl crawl crimCV Crossover Crossover ctmcd cTMed cTMed CVR CytoML cytosignal CytoSimplex CytoSimplex dann dann DatabionicSwarm DatabionicSwarm DatAssim dateutils dateutils DCCA dccmidas dccpp dccpp dcov DCSmooth dcurver dcurver deBif deBif deepgp deforestable deform DegNorm demu densEstBayes densityratio DepthProc DepthProc deseats DESeq2 desla desla deSolve deSolve dexter dfms dfms dfphase1 dglars DGM DGM DGP4LCF DGP4LCF diagis diagis didimputation DifferentialRegulation DIFM dina dina distinct diversitree diversitree dlm dmbc dmbc DMQ dMrs DoseFinding DoseFinding DOVE DR.SC DR.SC drclust drgee DriftBurstHypothesis DriftBurstHypothesis DRIP DRIP dsdp dsdp DSSP DSSP DstarM DstarM DSWE DSWE dti dtwclust dtwclust dynaTree dynmix dynmix DySS Eagle earth earthtide ebdbNet ebdbNet EBEN eBsc eBsc ebTobit ebTobit echoice2 echoice2 echos echos ecodist ecodist economiccomplexity economiccomplexity edgeR edina edina eDMA eegUtils EFAfactors EFAtools EFAtools eha eha eigen1 eimpute elmNNRcpp elmNNRcpp em em emBayes EMCluster EMCluster EMgaussian EMgaussian emIRT emIRT EMMIXgene empichar empichar endorse endorse epigraHMM EpiLPS EpiLPS epistasisGA equateMultiple EquiTrends EquiTrends ergmito ergmito errum errum esaddle esaddle esemifar esreg esreg estimateW etm etm eulerr eulerr evgam evgam evinf evinf evolqg evolqg ExhaustiveSearch ExhaustiveSearch experiment experiment expm expm expQ2 ExtremalDep ExtremalDep exuber exuber fabMix factorstochvol factorstochvol fad fad fanc FarmSelect FarmSelect FarmTest FarmTest fastadi fastadi FastBandChol fastcpd fastcpd fasterElasticNet fasterElasticNet fastGHQuad fastGHQuad fastGLCM fastGLCM fastglmpca fastglmpca fastICA fastkqr fastliu fastM fastmatrix fastmatrix fastPLS FastSF fastTopics fastTopics FBFsearch fclust fctbases fctbases fdacluster fdacluster fdaMixed fdaMixed fdaSP fdasrvf fdasrvf fdesigns fDMA fDMA fect FGLMtrunc fICA filling filling FKF FKF FKF.SP FKF.SP flamingos flamingos FlexVarJM FlexVarJM float float FLORAL FLORAL FLOWMR flowWorkspace FMCCSD fmerPack fmf fmri forecast forecast fourierin fourierin fourPNO fourPNO fracdiff fracdiff FRASER FRESA.CAD FRESA.CAD FRESHD FRESHD funcharts funcharts FuzzySimRes FuzzySimRes fwildclusterboot GADAG gam gamsel gamselBayes GAS gaselect gaselect gasper gasper GauPro GauPro gcKrig gclm gclm GCPBayes GCPBayes GCSM GCSM GDINA GDINA gdpc gdpc gee GEEaSPU geigen geiger geiger GenSA geoBayes geocomplexity geocomplexity GeoDiff geoFKF geoFKF geoFourierFDA geoFourierFDA GeoModels GeoModels geostatsp gfiExtremes gfiExtremes GFM GFM ggdmc ggdmc GGMncv GGMncv GGMselect GGPA ggsc gigg gigg gjam glamlasso glamlasso Glarmadillo glcm glcm GLCMTextures GLCMTextures glinvci glinvci GLMaSPU GLMaSPU glmGamPoi glmm glmmEP glmmML GMCM GMCM GMKMcharlie gmm gmm GMMAT GMMAT gmtFD gmvjoint gmvjoint gMWT gMWT gnm gnm gofar gofar goffda goffda GofKmt goldfish goldfish GPCMlasso gpcp GPFDA GpGp GpGp GPM gps gps GPvam GPvecchia graper graphicalEvidence graphicalVAR gRbase gRbase greed greed GreedyEPL GRENITS gridOT gRim gRim grove growfunctions grpsel grpsel GSE gss gstat gstat gsynth GWASinlps GWASinlps GWmodel GWmodel3 GxEScanR harmony harmony hawkes hdbcp hdbcp hdbm hdflex hdflex HDJM hdnom hdnom HDNRA HDNRA hdpGLM hdpGLM HDSpatialScan HDTD HDtweedie hgm hgwrr hgwrr hibayes hibayes HiDimDA HiGarrote highfrequency highfrequency higlasso HistDAWass HistDAWass hitandrun hitandrun hkevp hkevp HLMdiag HLMdiag HMB hmcdm hmcdm HMMEsolver hpa HSAR HSAR HTLR HTLR hypervolume hypervolume iapws iAR ibr iccbeta iccbeta iClusterPlus iClusterVB iClusterVB ICSClust ICSClust ICtest idefix idefix iDOVE IFP igraph igraph ILSE ILSE imbalance imbalance inca inferCSN inferCSN infinitefactor INLAspacetime INLAspacetime interep interflex intkrige intkrige intrinsicFRP intrinsicFRP intsurv intsurv ipfp ipfp irlba irlba islasso ivdoctr ivdoctr ivsacim ivx ivx jackalope jackalope JANE JANE JFM JMbayes JMbayes JMbayes2 JMbayes2 jmcm joineRML joineRML jointDiag jointDiag jrSiCKLSNMF jrSiCKLSNMF jSDM jSDM kalmanfilter kazaam kdecopula kdecopula kerndwd KernelKnn KernelKnn kernlab KernSmooth KFAS KFAS kimfilter KODAMA KODAMA KoulMde krige kyotil kyotil l0ara L0Learn L0Learn l1spectral LA laGP LAM LAM LaMa LaMa lamle Langevin LassoGEE LassoGEE latentgraph latentnet latentnet lavacreg lavacreg lavaSearch2 lavaSearch2 lddmm ldsep ldsep ldsr ldsr ldt LEA lefko3 legion legion leidenbase leidenbase lemur leptokurticMixture lessSEM lessSEM lfa lfe lfe libcoin lidR lidR LikertMakeR LikertMakeR limSolve linconGaussR linconGaussR linelistBayes linelistBayes list list lit lit ljr lm.br LMest Lmoments lmSubsets lmSubsets lnmixsurv lnmixsurv localgauss lodr LogConcDEAD logconcens logspline longclust LongMemoryTS LongMemoryTS lorec lotri lotri lowmemtkmeans lowmemtkmeans lowpassFilter LowRankQP lpirfs lpirfs lpSolveAPI lqmm lsirm12pl ltsk ltsspca ltsspca ludic ludic luna lvmcomp lvmcomp MABOUST MADMMplasso MAGEE MAGEE magi magree MAINT.Data malan malan manifold ManifoldOptim ManlyMix maotai maotai mapfit mapfit MAPITR MAPITR maptpx maptpx marble marble markerpen markerpen markophylo markovchain markovchain mashr mashr mastif MAT matchingMarkets matchingMarkets Matrix Matrix MatrixCorrelation MatrixCorrelation matrixdist matrixdist MatrixExtra MatrixExtra MatrixLDA MatrixLDA MatTransMix MAVE mboost mboost mccca mcemGLM mclust MCMCprecision MCMCprecision mcmcse mcmcse MDEI MDEI mdgc mdgc mdmb mdmb MendelianRandomization MendelianRandomization meshed meshed MESS MESS metafolio metafolio MetaHD metapack metapack metaRange metaRange meteorits meteorits mets mets mev mev mgcv MGMM MGMM miceadds miceadds miceFast miceFast microsimulation microsimulation mig mig miloR milr milr minimaxApprox minimaxApprox miniPCH miniPCH minpack.lm mirt mirt mirtCAT mirtCAT mirtjml mirtjml MiSPU MiSPU MissCP missoNet missoNet mixAK mixedBayes mixedBayes mixedCCA mixedCCA mixedMem mixedMem MixMatrix MixMatrix MixSim MixSim mixsqp mixsqp mixture MLEcens mlegp mlegp MLModelSelection mlpack mlrv mmcif mmcif MMGFM MMGFM mmsample MMVBVS MMVBVS MNARclust mnorm MNP MNP modeLLtest modeLLtest modsem modsem mombf mombf momentfit momentfit momentuHMM momentuHMM MomTrunc MomTrunc monomvn Morpho Morpho moveHMM moveHMM moveMMPP mp mp mpath mpath MR.Corr2 MR.CUE MR.LDP MR.RGM MR.RGM MRAID mrfDepth mrfDepth mrgsolve mrgsolve MRPATH MSCMT MSGARCH msgps MSIMST MSIMST msm MSstats MSTest MSTest MTLR MTLR multAbund multbxxc MultiCOAP MultiCOAP multilevLCA multilink multilink multinomineq multinomineq multipleOutcomes MultiscaleDTM MultiscaleDTM multitaper multitaper multivar MultNonParam MultOrdRS MultOrdRS MultSurvTests MultSurvTests mutualinf mutualinf mvMAPIT mvMAPIT mvMORPH mvMORPH MVMRcML mvnfast mvtnorm mvtnorm n1qn1 n1qn1 navigation navigation nbfar nbfar ncpen ncpen netClust netcmc netcontrol netdiffuseR netdiffuseR NetMix NetMix NetPathMiner netrankr netrankr NetRep NetRep NetworkDistance NetworkDistance nevada nevada ngspatial nimble nimble nleqslv nlmixr2est nlmixr2est nlmixr2extra nlmixr2extra nlmm nlmm NLPwavelet NLPwavelet nlsur nonlinearTseries nonlinearTseries nonneg.cg nonneg.cg nonprobsvy nonprobsvy NPCirc NPflow NPflow nprobust npsp npsp o2plsda o2plsda oc oc oeli oeli oem oem ohoegdm ohoegdm onlineforecast onlinePCA OpenImageR OpenImageR OPSR OPSR optmatch optmatch orthoDr orthoDr OSFD OutcomeWeights OutcomeWeights OUTRIDER pacotest pacotest PAGFL PAGFL pagoda2 pagoda2 parallelDist parallelDist parglm parglm pARI pARI parma parma PartialNetwork PartialNetwork partition partition party party pcaL1 pcalg pcalg pcaPP pcaPP PCMBaseCpp PCMBaseCpp PCMRS pda pdSpecEst pdSpecEst pecora penAFT penalized PenCoxFrail penPHcure penPHcure pense pense PEPBVS pgee.mixed pgee.mixed pgKDEsphere pgmm pgsc pgsc phangorn phangorn phangorn PhaseType PhaseType phenofit phenofit PHSMM PhylogeneticEM PhylogeneticEM phylosignal phylosignal phyr phyr PINSPlus PJFM planar pleiotest pleiotest PLFD PLFD plgp pliman pliman PLNmodels PLNmodels PLSiMCpp pmartR pmartR poismf poismf polspline polyapost polykde polykde POMaSPU pomp pomp popPCR popPCR porridge PPCI PPforest PPforest ppgmmga ppgmmga PPMR PPMR pprof pprof PPSFS PPSFS PPtreeregViz PPtreeregViz PPtreeregViz PQLseq pqrBayes pqrBayes pqrfe PRDA PRDA PRECAST predkmeans predkmeans preprocessCore PRIMME probe probe ProFAST ProFAST profoc profoc projpred projpred pRoloc prospectr prospectr prototest proxyC proxyC PRTree psbcSpeedUp psbcSpeedUp psd psd pseudoCure pseudoCure PSGD PSGD psgp psqn psqn psychonetrics psychonetrics puniform puniform pyinit pyinit qbld qch qcluster qfa qgg qgg qif qif qpgraph QR qris qris qtl qtl qtlpoly qtlpoly QTLRel quadprog quadrupen quadrupen quanteda.textmodels quanteda.textmodels quantreg QuantRegGLasso QuantRegGLasso QZ QZ Racmacs Racmacs rags2ridges rags2ridges ramcmc ramcmc RandomFields RandomFieldsUtils RandomFieldsUtils RandomForestsGLS rare rare ratematrix ratematrix rbridge RcppArmadillo RcppArmadillo RcppBlaze RcppBlaze RcppCensSpatial RcppCensSpatial RcppDist RcppDist RcppEigen RcppEigen RcppEnsmallen RcppEnsmallen RcppHMM RcppKalman RcppPlanc RcppSMC RcppSMC Rcsdp Rcsdp Rdimtools Rdimtools rdist rdist Rdsdp ReAD RealVAMS redist redist redistmetrics redistmetrics rEDM registr registr regmed regmhmm regmhmm regnet regnet regsem regsem relliptical relliptical relsurv remstimate remstimate rENA repolr reReg reReg resemble resemble reservr reservr resourcecode resourcecode revdbayes revdbayes revealedPrefs rexpokit rexpokit Rfast Rfast Rfast2 Rfast2 RFCCA RFCCA Rforestry Rforestry ridgetorus ridgetorus Riemann Riemann RiemBase RiemBase riskRegression riskRegression RJcluster rlibkriging rliger rliger Rlinsolve Rlinsolve RLT RLumModel RLumModel rmarchingcubes rmarchingcubes RMFM RMFM rmgarch rmgarch rmi Rmodule RMSS RMSS rmumps rmumps rMVP rMVP Rnanoflann RNOmni RNOmni roben roben RoBMA RoBMA roboBayes robregcc robregcc RobStatTM RobStatTM robStepSplitReg robStepSplitReg robsurvey robsurvey robust robust robustarima robustarima robustbase robustbase robustBLME robustBLME robustcov robustcov robustHD robustHD robustlmm robustlmm robustmatrix rofanova rofanova ROI.plugin.qpoases roll roll rolleigen rolloptim rollshap roptim roptim rotations rotations rpeaks Rphylopars Rphylopars rpm rpm rpms rpql RprobitB RprobitB rr rrcov rrcov RRI rrMixture rrpack rrum rrum rsae rsae RSpectra RSpectra rSpectral rSpectral RSSL RSSL RStoolbox RStoolbox rstpm2 rstpm2 rsvddpd rsvddpd RTMB RTMB RTMBp rtrend rtrend Rtsne Rtsne rust rust RWNN RWNN rxode2 rxode2 s2net s2net saeMSPE saeRobust saeRobust SAGMM SAGMM SAIGEgds SAMGEP SAMGEP samplr samplr samurais samurais SANvi SANvi sarima sarima sasfunclust sasfunclust SBmedian SBmedian sbmSDP SBMTrees SBMTrees SC.MEB SC3 ScatterDensity ScatterDensity scde scGPS scINSIGHT scINSIGHT scmap scMitoMut scoringRules scoringRules scran scs scs sctransform scuttle sdetorus sdetorus sdpdth sdsfun sdsfun secure sem semidist semidist sentometrics sentometrics sentopics sentopics seqHMM seqHMM sfcr sfcr SFSI SFSI sgd sgd sgdGMF sgdGMF SGDinference SGDinference sglasso sgolay sgolay sgs sgs shapr shapr ShrinkCovMat ShrinkCovMat shrinkDSM shrinkTVP shrinkTVPVAR SHT SHT Sieve sievePH sievePH SiFINeT signeR SimBIID SimBIID simcdm simcdm SimJoint SIMLR simmr simmr simStateSpace simStateSpace SimSurvNMarker SimSurvNMarker SimTOST simts simts singR sirt sirt slalom slam slcm slcm sleev slfm SLOPE SLOPE slp smaa smaa SMMA SMME smmR smooth smooth smoots smurf SNPRelate snpsettest snpsettest SoftBart sommer sommer sorcering sox spAbundance spAbundance SpaCCI SpaceTimeBSS SpaCOAP SpaCOAP spam spam64 SPARK sparseDFM SparseICA SparseICA sparsereg sparseSEM sparsevb SpatialBSS SpatialExtremes SpatialExtremes spatialreg spatialreg SpatialTools SpatialTools SpatMCA SpatMCA SpaTopic SpaTopic SpatPCA SpatPCA spBayes spBayesSurv spBFA spBFA spBPS spBPS spc spCP spCP spcr specs spectralGraphTopology spectralGraphTopology spEDM spEDM spfa spFW sphunif sphunif spikeSlabGAM spikeSlabGAM spinBayes spinBayes splines2 splines2 splmm spMC spnn spnn spNNGP spOccupancy spOccupancy springer springer sprintr sprintr spStack spStack srm srm ssgraph Sshaped SSOSVM SSOSVM sstvars sstvars STAREG starma starma statespacer statespacer statgenGWAS statgenGWAS statgenQTLxT stcos stcos StempCens stepR stepSplitReg stepSplitReg stm stm stochQN stochvol stochvol stpm stpphawkes stratEst stratEst StratifiedSampling StratifiedSampling strucchangeRcpp strucchangeRcpp sts StuteTest subplex subplex subsampling subsampling SubTite supclust supclust superml superml SuperpixelImageSegmentation SuperpixelImageSegmentation surbayes surbayes SurrogateRegression SurrogateRegression surtvep surtvep survAUC survAUC SurvivalClusteringTree svars svars svd svd SVP switchSelection symmetry symphony synlik synMicrodata T4cluster T4cluster T4transport T4transport tabularMLC tabularMLC TAG TAM TAM TapeS TapeS targeted targeted TauStar TCIU tclust tclust TDAkit TDAkit TDAvec TDAvec telefit telefit tensorBSS TestDesign TestDesign tetrascatt tetrascatt textTinyR textTinyR tfarima tfarima tgp tgstat tgstat tidypopgen timereg timereg tlars tlars tlrmvnmvt TMB TMB tmvtnorm tmvtnorm tmvtnsim TPmsm TPmsm TreeBUGS TreeBUGS treeclim treeclim treenomial treenomial TruncatedNormal TruncatedNormal tsBSS tseries tseriesTARMA TSLA tsmarch tsmarch tsPI tsPI tvR tvR ubms ubms ucminf ucminf UComp unmarked unmarked UPCM updog updog UtilityFrailtyPH12 VAJointSurv VAJointSurv varband varband VARDetect VARDetect VARSELECTEXPOSURE VarSelLCM VarSelLCM VBJM VCA vcpen vcrpart VeccTMVN VeccTMVN vegan vegan velocyto.R VEwaningVariant VMDecomp VMDecomp vMF vMF volesti walk walker walker waspr waspr watson WaveSampling WaveSampling wbacon wbacon wCorr wCorr wdnet wdnet WeibullR weibulltools weibulltools winsorize womblR womblR WRI wv wv XDNUTS yuima yuima zic ZVCV ZVCV
opencv	Computer vision Image Processing library	libopencv-video-dev libopencv-objdetect-dev libopencv-imgcodecs-dev libopencv-photo-dev libopencv-videoio-dev libopencv-core-dev libopencv-imgproc-dev libopencv-contrib-dev libopencv-highgui-dev	image.textlinedetector image.textlinedetector opencv opencv
openjdk	OpenJDK Java runtime, using Hotspot JIT	openjdk-21-jre-headless	Achilles AgroTech AHPWR AntAngioCOOL AQEval AQEval arulesNBMiner arulesNBMiner aslib aslib Avionic24 AWR AWR AWR.Kinesis AWR.Kinesis babette babette bartMachine bartMachineJARs bartMan BASiNET BEACH beastier beastier BeastJar BeastJar blendR bmggum bmggum bnpa boilerpipeR boilerpipeR BridgeDbR CBSr CBSr ccpsyc ChoR CHRONOS CirceR CirceR CohortAlgebra CohortAlgebra CohortExplorer CohortExplorer CohortGenerator CohortGenerator collUtils collUtils CommonDataModel comunicacion ConvertPar ConvertPar corehunter coreNLP Crossover Crossover D2MCS D2MCS d4t4tur daltoolboxdp daltoolboxdp DaMiRseq DatabaseConnector DatabaseConnector DatabaseConnectorJars DatabaseConnectorJars DataClean DataClean DataLoader debCAM DecorateR DecorateR Deducer DeepPINCS denguedatahub denguedatahub dialr dialr dialrjars dialrjars DIscBIO DIscBIO disclosuR disclosuR DIZutils DIZutils DQAgui DQAgui DQAstats DQAstats drawsample drawsample dsa ELT enmSdmX enmSdmX EnsembleBase EnsembleCV EnsemblePCReg EnsemblePenReg eprscope esATAC Eunomia Eunomia EvidenceSynthesis EvidenceSynthesis evoper evoper fastreeR FastRet FastRet FeatureExtraction FeatureExtraction fsdaR fsdaR FSelector FSelector G2Sd GARS GenProSeq geogenr geogenr GetDFPData GetDFPData ggdemetra ggdemetra ggdemetra3 GGUM GGUM glmulti gMCP gMCP GreedyExperimentalDesign GreedyExperimentalDesign GreedyExperimentalDesignJARs GTbasedIM helloJavaWorld hive html2pdfr iBART iBART InflectSSP informativeSCI informativeSCI InSilicoVA InSilicoVA intamapInteractive InterfaceqPCR iplots ISM JATSdecoder JATSdecoder JavaGD JavaGD JGR jNSMR joinXL joinXL jplantuml4r lar lilikoi LipinskiFilters llama LLM loa loa MadanText MadanText MadanTextNetwork MadanTextNetwork mailR mailR mallet mallet massSpectrometryR matchingMarkets matchingMarkets mauricer mauricer mcbette mcbette metabinR MetChem methodical miRSM mMARCH.AC mMARCH.AC moodef moodef MorbiditySpainR MS2Quant MultiGroupSequential mutossGUI mwa NicheBarcoding NicheBarcoding NLPutils nodeSub nodeSub ODB ODB odkr OhdsiShinyAppBuilder oii openNLP openNLPdata OpenStreetMap OpenStreetMap openVA openVA OptimalRerandExpDesigns OptimalRerandExpDesigns oRus OSMscale OSMscale PatientLevelPrediction PatientLevelPrediction patRoon pems.utils pems.utils postGGIR psData PsychWordVec PsychWordVec qCBA qCBA qdap qdap r5r r5r rapidraker rapidraker RBioFormats rCBA rCBA rcdk rcdklibs rcdklibs rChoiceDialogs Rcurvep Rcurvep Relectoral REPPlab REPPlab REPPlabShiny restoptr restoptr ResultModelManager ResultModelManager rexer rexer rflsgen rflsgen rGroovy RH2 RH2 rJava rjd3bench rjd3filters rjd3highfreq rjd3nowcasting rjd3providers rjd3report rjd3revisions rjd3stl rjd3sts rjd3toolkit rjd3tramoseats rjd3workspace rjd3x11plus rjd3x13 RJDBC RJDBC RJDemetra RJDemetra rjdmarkdown rjdmarkdown rjdqa rjdqa rjdworkspace rjdworkspace RJSDMX RJSDMX rkafkajars RKEA RKEAjars RKEEL RMassBank rmcfs rmelting RMOA RMOAjars RNCBIEUtilsLibs RNetLogo RNetLogo rolap rolap rOmniDriver roogledocs rQSAR rRDP rRDP rrepast rrepast RSCAT RSCAT RSentiment RSP rsubgroup rviewgraph RWeka RWekajars RxnSim RxnSim sarks SAvalidation scagnostics scagnostics sdpdth SELEX SensMap SensMap shelltrace shelltrace simplace simplace simplaceUtil sjdbc slowraker slowraker SpatialOmicsOverlay spcosa SQLove SQLove SqlRender SqlRender staplr staplr stops stops streamMOA streamMOA subspace surveycto survHE survHEhmc survHEinla swipeR swipeR tabulapdf tabulapdf tangela testRapi text text topics topics tpfp tssim tvCoef VAExprs venneuler venneuler wallace wallace WhatsR when when wordnet XLConnect XLConnect xlsx xlsx xlsxjars xlsxjars
openjpeg2	JPEG 2000 image compression/decompression library	libopenjp2-7-dev	divest divest
openmp	GCC OpenMP (GOMP) support library		abclass abclass abess abn abn acebayes ACSSpack adaptIVPT adaptIVPT adelie adelie adimpro adjclust adjclust ADMM ADMM aftsem aftsem aihuman aihuman alcyon AllelicSeries AllelicSeries AlphaSimR AlphaSimR AMISforInfectiousDiseases AMISforInfectiousDiseases AnaCoDa AnaCoDa ANN2 ANN2 AntMAN AntMAN aorsf aorsf Apoderoides Apoderoides apollo ARCensReg ARCensReg ARCokrig ARCokrig asmbPLS asmbPLS ASV atakrig ATNr autoFRK autoRasch aws awsMethods banditpam bandle BAREB BART bartcs bartcs BASiCS batchmix batchmix Bayenet Bayenet BayesChange BayesChange bayescopulareg bayescopulareg BayesDLMfMRI bayesEO bayesEO BayesMallows BayesMallows bayesPO bayesPO BayesPPD BayesPPDSurv BayesReversePLLH BayesRGMM BayesSpace BayesSUR BayesSUR BayesSurvive baygel baygel bayNorm BCClong BCClong BCEE BDgraph BEKKs BET BGData BGData BGGM BHMSMAfMRI BHMSMAfMRI BHSBVAR biClassify bigergm biglasso biglasso BigQuic bigsnpr bigsnpr bigstatsr bigstatsr biosensors.usc biosensors.usc blatent blatent Blend Blend blockcluster bmabasket bmabasket BNPmix bonsaiforest bpgmm bpnreg bpnreg bpr BradleyTerryScalable BranchGLM BranchGLM brif BRISC brmsmargins brmsmargins brnn bssm bssm bsvars bsvarSIGNs bsvarSIGNs BTtest BTtest Buddle BUSseq bvhar bvhar CAESAR.Suite CAESAR.Suite carat cartogramR CausalGPS CausalGPS causl CautiousLearning ccImpute CDatanet CDatanet celda CelliD cellWise CFC cglm cheapr cheapr circlus CircSpaceTime CircSpaceTime circtree circumplex circumplex cIRT cIRT clubpro clubpro ClusterR ClusterR CLVTools CLVTools cmfilter cmfrec cmfrec CMGFM CMGFM COAP COAP collapse collapse Colossus Colossus combinIT combinIT COMIX communication conleyreg conleyreg conos conos conos conquer conquer coop coop cophescan cophescan copre copre CORElearn cosimmr cosimmr countdata covdepGE covdepGE CovRegRF CovRegRF CPGLIB CPGLIB cpss cpss crctStepdown csdR ctl ctmcd cTMed cTMed CWT CWT daedalus dccpp dccpp DCSmooth dcurver dcurver DECIPHER deepgp deform DegNorm Delaporte Delaporte DeMixT demu densityratio densvis DepthProc DepthProc deseats desla desla dexter dexter dexterMST dfmta DGM DGM didimputation DIFM dipm dlmtree dlmtree dmbc dmbc dMrs DNABarcodes dnn dotCall64 DOVE drclust DriftBurstHypothesis DriftBurstHypothesis dsem dsem DSSP DSSP dust dust2 Eagle Eagle ebTobit ebTobit echoice2 echoice2 echos echos econetwork economiccomplexity economiccomplexity eDMA eegUtils EFAfactors EFAtools EFAtools elfDistr elfDistr elgbd elgbd elmNNRcpp elmNNRcpp em em emBayes emIRT emIRT empichar empichar epigraHMM epigrowthfit epigrowthfit EpiLPS EpiLPS epiworldR epiworldR ergmito ergmito errum errum ETAS ETAS evgam evinf evinf excursions excursions expQ2 expSBM fabMix fanc FarmTest FarmTest fastadi fastadi fastcpd fastcpd fasterElasticNet fasterElasticNet fastGLCM fastGLCM fastJT fastLink fastLink fastliu fastpos fastpos fdacluster fdacluster fdaSP fdasrvf fdasrvf fdesigns fDMA fDMA fedmatch FENmlm FGLMtrunc fHMM fHMM fido fido filling filling fixest fixest float float FLORAL FLORAL FLOWMR FMCCSD fmerPack fmf fourPNO fourPNO frailtypack FRESA.CAD FRESA.CAD FRESHD FRESHD fRLR fRLR FSInteract fstcore fwildclusterboot GauPro GauPro GCSM GCSM GeneScape genie genie genieclust genieclust geocmeans geocmeans geocomplexity geocomplexity GeoDiff geoFKF geoFKF geoFourierFDA geoFourierFDA gfiExtremes gfiExtremes ggsc gjam GLCMTextures GLCMTextures glinternet glinvci glinvci gllvm gllvm glmmrOptim glmmrOptim glmmTMB glmmTMB gmGeostats gmvjoint gmvjoint goat goat goftte goldfish goldfish gower gower GPBayes GPBayes gpboost GPCMlasso GPFDA GpGp GpGp GPM GPvecchia graphicalEvidence grattan grattan grattanInflators grattanInflators gravmagsubs greed greed gridOT groupedSurv GWmodel GWmodel3 GxEScanR hashr hashr hawkesbow hawkesbow hdbcp hdbcp HDclust hdflex hdflex HDNRA HDNRA HDTD HDTSA healthyAddress healthyAddress hgwrr hgwrr hibayes hibayes highfrequency highfrequency higlasso HistDAWass HistDAWass hkevp hkevp HMB hmcdm hmcdm hpa hrt HSAR HSAR hsphase HTLR HTLR huge huge hutilscpp hutilscpp iAR iBMQ iClusterVB iClusterVB icr icr idefix idefix iDOVE image.CornerDetectionHarris image.CornerDetectionHarris image.libfacedetection image.libfacedetection imager imager infinitefactor influenceR influenceR interep interflex intRinsic intRinsic intrinsicFRP intrinsicFRP intsurv intsurv invgamstochvol ipsecr ipsecr iq iq ISoLDE isotree isotree JANE JANE JMbayes JMbayes JMbayes2 JMbayes2 joineRML joineRML jrSiCKLSNMF jrSiCKLSNMF kalmanfilter kendallknight KernelKnn KernelKnn kimfilter kit kit kmBlock kohonen LA laGP LaMa LaMa lamle Langevin lasR LassoGEE LassoGEE lavacreg lavacreg lddmm ldsep ldsep ldsr ldsr ldt lessSEM lessSEM lfl lfl lidR lidR lightgbm linconGaussR linconGaussR lit lit Lmoments lotri lotri lowmemtkmeans lsirm12pl ludic ludic lvmcomp lvmcomp MABOUST MADMMplasso maotai maotai MAPITR MAPITR marble marble markerpen markerpen mashr mashr matchingMarkets matchingMarkets MatchIt MatchIt matrixdist matrixdist MatrixExtra MatrixExtra mccca MDEI MDEI MDFS mdgc mdgc meanr meanr meanShiftR meanShiftR melt melt meshed meshed metapack metapack methimpute mev mev mgcv mgsa miceFast miceFast mig mig miic miic miloR miniPCH miniPCH miRNAss mirt mirt mirtjml mirtjml MixAll mixedBayes mixedBayes mixgb mixgb MixMatrix MixMatrix mixture mlpack mlrv mmand mmand mmcif mmcif mmcm mmcm MMGFM MMGFM mmpca mmpca mnorm modsem modsem moire mombf MonotonicityTest MonotonicityTest Morpho Morpho motifcounter MPCR mpmi MR.Corr2 MR.CUE MR.LDP MR.RGM MR.RGM mrfse mritc mritc mRMRe mRMRe MRPATH MSTest MSTest MultiCOAP MultiCOAP multilink multilink multinomialLogitMix multinomineq multinomineq multivar MultOrdRS MultOrdRS mutualinf mutualinf mvMAPIT mvMAPIT mvnfast mvrsquared mvrsquared NAIR NAIR netClust netdiffuseR netdiffuseR NetMix NetMix netrankr netrankr NetworkDistance NetworkDistance nftbart nlmeVPC nlmixr2est nlmixr2est NLPwavelet NLPwavelet nmslibR nmslibR nn2poly nn2poly nonneg.cg normr not NPCirc NPflow NPflow nprobust NScluster nuggets nuggets o2plsda o2plsda oem oem ohoegdm ohoegdm OpenImageR OpenImageR OpenMx OPSR OPSR orthoDr orthoDr OutcomeWeights OutcomeWeights outliertree outliertree PAFit PAFit PAGFL PAGFL pagoda2 pagoda2 parmigene parmigene PartialNetwork PartialNetwork PCMRS penPHcure penPHcure pense pense pgKDEsphere pgsc pgsc Phase123 phenofit phenofit pimeta pimeta PLFD PLFD pliman pliman plmmr plmmr PLSiMCpp poismf poismf pompp pompp poppr poppr PPMR PPMR pprof pprof PQLseq pqrBayes pqrBayes praznik praznik probe probe profoc profoc ProjectionBasedClustering prospectr prospectr psbcSpeedUp psbcSpeedUp PSGD PSGD psqn psqn qch qfratio qfratio qris qris qtlpoly qtlpoly QUBIC Racmacs Racmacs RandomFields RandomFieldsUtils RandomFieldsUtils RandomForestsGLS randomForestSRC rasterKernelEstimates rasterKernelEstimates ratematrix ratematrix Rborist RcppArmadillo RcppArmadillo RcppBlaze RcppBlaze RcppCensSpatial RcppCensSpatial RcppColors RcppColors RcppEnsmallen RcppEnsmallen RcppLbfgsBlaze RcppLbfgsBlaze RcppML RcppML rcpptimer rcpptimer Rdimtools Rdimtools rdist rdist ReAD recosystem recosystem redist redist reglogit regmhmm regmhmm regnet regnet rehh relliptical relliptical remify remify remotePARTS remotePARTS remstimate remstimate resemble resemble reservr reservr Rfast Rfast Rfast2 Rfast2 RFCCA RFCCA rFerns rflann RFpredInterval rGADEM RhpcBLASctl Riemann Riemann RiemBase RiemBase RJcluster Rlibeemd Rlinsolve Rlinsolve Rlof RLT RLT RMFM RMFM rmgarch rmgarch RMSS RMSS rMVP rMVP Rnanoflann RNiftyReg RNiftyReg roben roben roboBayes robustcov robustcov robustHD robustHD robustmatrix rofanova rofanova roll roll rolleigen rolloptim rollshap rpart.LAD rpf RPhosFate RPhosFate RprobitB RprobitB rrpack rrum rrum RSC rsetse Rsomoclu rsvddpd rsvddpd RTMBp rtrend rtrend Rtsne Rtsne runibic Rvcg RWNN RWNN rxode2 rxode2 s2net s2net saeMSPE SAM SAM SANple SANple SANvi SANvi sasfunclust sasfunclust SBmedian SBmedian ScatterDensity ScatterDensity scde scregclust scregclust sdsfun sdsfun sentometrics sentometrics sentopics sentopics seqHMM seqHMM sgdGMF sgdGMF sgs sgs shapr shapr ShrinkCovMat ShrinkCovMat SHT SHT sievePH SiFINeT simer simer SimInf SimInf SIMplyBee SIMplyBee simStateSpace simStateSpace SimSurvNMarker SimSurvNMarker singR sircovid sitmo sitmo slcm slcm sleev smarter smer smer SMME smoots snpsettest snpsettest sommer sommer sox spAbundance spAbundance SpaceTimeBSS SpaCOAP SpaCOAP spaMM SPARK SparseArray SparseArray sparseDFM sparseLTSEigen sparseLTSEigen sparsevb spaths spaths SpatialBSS SpatialKWD SpatMCA SpatMCA SpaTopic SpaTopic SpatPCA SpatPCA spBayes spBPS spBPS specs spEDM spEDM spfa spinBayes spinBayes SpliceWiz SPlit SplitGLM SplitGLM SplitReg SplitReg splmm spMC spnn spnn spNNGP spOccupancy spOccupancy springer springer squat squat squat ssgraph sstvars sstvars STAREG statespacer statespacer statgenGWAS statgenGWAS statgenQTLxT STB stelfi StempCens stepSplitReg stepSplitReg StochBlock stochQN stpm stpphawkes stratEst stratEst stringdist stringdist StuteTest subrank SubTite SuperpixelImageSegmentation SuperpixelImageSegmentation surbayes surbayes surtvep surtvep svars svars SVP sylcount sylcount SynExtend T4cluster T4cluster T4transport T4transport tabularMLC tabularMLC targeted targeted tci tci tclust tclust TDAkit TDAkit TDAvec TDAvec textTinyR textTinyR tfarima tfarima tidylda tidylda tidypopgen tlars tlars TMB TMB tmvtnsim TPmsm TPmsm tramME tramME transfR transport transport treenomial treenomial TruncatedNormal TruncatedNormal tvR tvR twingp twinning UComp unmarked unmarked UPCM updog updog VAJointSurv VAJointSurv VARDetect VARDetect VARSELECTEXPOSURE VeccTMVN VeccTMVN vein vein velocyto.R VEwaningVariant VIC5 VIC5 vistla vistla VMDecomp VMDecomp vMF vMF watson wbacon wbacon wbsd wCorr wCorr wordspace wordspace XDNUTS xgboost ycevo ycevo
openmpi	High performance message passing library		bigGP pbdMPI pbdMPI pbdSLAP pbdSLAP Rmpi
openssl	Secure Sockets Layer toolkit	libssl-dev	arcgisplaces arcgisplaces arrow arrow EikonDownloader h5mread mongolite mongolite msoc openssl openssl PKI PKI readspss rhdf5 rhdf5 RSclient RSclient Rserve Rserve rtracklayer s2 s2 websocket websocket
pcre2	New Perl Compatible Regular Expression Library	libpcre2-dev	RcppCWB RcppCWB stringfish stringfish
poppler	PDF rendering library	libpoppler-glib-dev libpoppler-cpp-dev	pdftools pdftools Rpoppler
portaudio19	Portable audio I/O	portaudio19-dev	openmpt openmpt openmpt
postgresql	PostgreSQL C client library	libpq-dev	adbcpostgresql adbcpostgresql RPostgres RPostgres RPostgres RPostgreSQL RPostgreSQL
proj	Cartographic projection library	libproj-dev	gdalBindings ICESat2VegR lwgeom lwgeom PROJ PROJ proj4 proj4 rgdal sf sf terra terra vol2birdR vol2birdR
protobuf	Protocol buffers C++ library	libprotobuf-dev	bigrquerystorage bigrquerystorage cld3 cld3 protolite protolite RProtoBuf RProtoBuf tfevents tfevents
quantlib	Quantitative Finance Library	libquantlib0-dev	RQuantLib RQuantLib
redland	Redland Resource Description Framework (RDF) library	librdf0-dev	redland redland
sqlite3	SQLite 3 shared library	libsqlite3-dev	adbcsqlite adbcsqlite seqminer seqminer
suitesparse	Sparse Cholesky factorization library for sparse matrices	libsuitesparse-dev	rbff
tcl	Tcl (the Tool Command Language) v8.6	libtcl8.6	tkrplot
tesseract	Tesseract OCR library	libtesseract-dev	tesseract tesseract
tiff	Tag Image File Format (TIFF) library	libtiff-dev	Cairo Cairo ijtiff ijtiff imager imager ragg ragg tiff tiff unigd unigd
tk	Tk toolkit for Tcl and X11 v8.6 - run-time files	libtk8.6	tkrplot
udunits	Library for handling of units of physical quantities	libudunits2-dev	RNetCDF RNetCDF udunits2 units units
unixodbc	ODBC Driver Manager library for Unix	unixodbc-dev	odbc odbc RODBC
xz-utils	XZ-format compression library	liblzma-dev	bamsignals csaw deepSNV DiffBind diffHic epialleleR FLAMES h5vc jackalope jackalope maftools maftools methylKit mitoClone2 podkat QuasR raer Rhtslib Rsamtools scPipe TransView VariantAnnotation vcfppR vcfppR
zeromq3	Lightweight messaging kernel	libzmq3-dev	clustermq clustermq pbdZMQ pbdZMQ rzmq rzmq
zlib	Compression library	zlib1g-dev	affyio affyPLM alabaster.base bamsignals beachmat.hdf5 bigsnpr bigsnpr bio3d BPCells chihaya cpp11qpdf cpp11qpdf csaw CytoML deepSNV DEploid DEploid DEploid.utils devEMF devEMF DiffBind diffHic DropletUtils epialleleR epigraHMM FLAMES flowWorkspace gamstransfer gamstransfer gaston gmapR GMMAT GMMAT h5mread h5vc haven haven HiCDCPlus hipread jackalope jackalope knowYourCG maftools maftools makecdfenv methylKit milorGWAS mitoClone2 mongolite mongolite mzR NanoMethViz ncdfFlow ndjson ndjson oligo ondisc ondisc ondisc pgenlibr podkat qckitfastq qpdf qpdf QuasR raer rbedrock rbedrock RcppCNPy RcppCNPy readspss Rfastp Rgraphviz rhdf5 rhdf5 Rhdf5lib Rhdf5lib Rhtslib rmatio rmatio Rmmquant RNifti RNifti Rsamtools Rsubread rtracklayer scPipe screenCounter seqminer seqminer seqTools ShortRead Signac Signac smer smer snpStats sparkwarc sparkwarc strawr strawr TAQMNGR tidypopgen TransView unigd unigd VariantAnnotation vcfppR vcfppR vcfR vcfR vol2birdR vol2birdR writexl writexl XVector yyjsonr yyjsonr zlib