Showing 200 of total 607 results (show query)
ironholds
urltools:Vectorised Tools for URL Handling and Parsing
A toolkit for all URL-handling needs, including encoding and decoding, parsing, parameter extraction and modification. All functions are designed to be both fast and entirely vectorised. It is intended to be useful for people dealing with web-related datasets, such as server-side logs, although may be useful for other situations involving large sets of URLs.
Maintained by Os Keyes. Last updated 4 years ago.
42.4 match 131 stars 13.43 score 968 scripts 264 dependents
r-lib
httr:Tools for Working with URLs and HTTP
Useful tools for working with HTTP organised by HTTP verbs (GET(), POST(), etc). Configuration functions make it easy to control additional request components (authenticate(), add_headers() and so on).
Maintained by Hadley Wickham. Last updated 1 years ago.
15.6 match 989 stars 20.56 score 29k scripts 4.3k dependents
jozefhajnala
nhlapi:A Minimum-Dependency 'R' Interface to the 'NHL' API
Retrieves and processes the data exposed by the open 'NHL' API. This includes information on players, teams, games, tournaments, drafts, standings, schedules and other endpoints. A lower-level interface to access the data via URLs directly is also provided.
Maintained by Jozef Hajnala. Last updated 4 years ago.
40.4 match 29 stars 6.00 score 23 scriptsr-lib
httr2:Perform HTTP Requests and Process the Responses
Tools for creating and modifying HTTP requests, then performing them and processing the results. 'httr2' is a modern re-imagining of 'httr' that uses a pipe-based interface and solves more of the problems that API wrapping packages face.
Maintained by Hadley Wickham. Last updated 8 days ago.
13.6 match 246 stars 17.66 score 1.9k scripts 1.1k dependents
dmpe
urlshorteneR:R Wrapper for the 'Bit.ly' and 'Is.gd'/'v.gd' URL Shortening Services
Allows using two URL shortening services, which also provide expanding and analytic functions. Specifically developed for 'Bit.ly' (which requires OAuth 2.0) and 'is.gd' (no API key).
Maintained by John Malc. Last updated 28 days ago.
bitlyisgdshorten-urlsshortenershorturlurl
35.0 match 21 stars 6.70 score 53 scripts 1 dependents
gesistsa
adaR:A Fast 'WHATWG' Compliant URL Parser
A wrapper for 'ada-url', a 'WHATWG' compliant and fast URL parser written in modern 'C++'. Also contains auxiliary functions such as a public suffix extractor.
Maintained by David Schoch. Last updated 25 days ago.
29.8 match 27 stars 6.95 score 11 scripts 2 dependentsr-lib
desc:Manipulate DESCRIPTION Files
Tools to read, write, create, and manipulate DESCRIPTION files. It is intended for packages that create or manipulate other packages.
Maintained by Gábor Csárdi. Last updated 1 months ago.
13.2 match 123 stars 14.68 score 409 scripts 1.1k dependents
rstudio
shiny:Web Application Framework for R
Makes it incredibly easy to build interactive web applications with R. Automatic "reactive" binding between inputs and outputs and extensive prebuilt widgets make it possible to build beautiful, responsive, and powerful applications with minimal effort.
Maintained by Winston Chang. Last updated 13 days ago.
reactiverstudioshinyweb-appweb-development
9.0 match 5.4k stars 21.28 score 108k scripts 1.8k dependents
posit-dev
connectapi:Utilities for Interacting with the 'Posit Connect' Server API
Provides a helpful 'R6' class and methods for interacting with the 'Posit Connect' Server API along with some meaningful utility functions for regular tasks. API documentation varies by 'Posit Connect' installation and version, but the latest documentation is also hosted publicly at <https://docs.posit.co/connect/api/>.
Maintained by Toph Allen. Last updated 3 days ago.
17.4 match 47 stars 10.48 score 252 scripts 1 dependents
parklab
Nozzle.R1:Nozzle Reports
The Nozzle package provides an API to generate HTML reports with dynamic user interface elements based on JavaScript and CSS (Cascading Style Sheets). Nozzle was designed to facilitate summarization and rapid browsing of complex results in data analysis pipelines where multiple analyses are performed frequently on big data sets. The package can be applied to any project where user-friendly reports need to be created.
Maintained by Nils Gehlenborg. Last updated 10 years ago.
gehlenborglabhtml-reportreproducible-research
32.4 match 68 stars 5.31 score 10 scripts 2 dependents
jaseziv
worldfootballR:Extract and Clean World Football (Soccer) Data
Allow users to obtain clean and tidy football (soccer) game, team and player data. Data is collected from a number of popular sites, including 'FBref', transfer and valuations data from 'Transfermarkt'<https://www.transfermarkt.com/> and shooting location and other match stats data from 'Understat'<https://understat.com/>. It gives users the ability to access data more efficiently, rather than having to export data tables to files before being able to complete their analysis.
Maintained by Jason Zivkovic. Last updated 30 days ago.
fbreffootballfootball-datasoccer-datasports-datatransfermarktunderstat
15.1 match 506 stars 9.89 score 516 scripts 2 dependentsr-lib
xml2:Parse XML
Bindings to 'libxml2' for working with XML data using a simple, consistent interface based on 'XPath' expressions. Also supports XML schema validation; for 'XSLT' transformations see the 'xslt' package.
Maintained by Jeroen Ooms. Last updated 3 days ago.
7.8 match 220 stars 18.52 score 6.3k scripts 2.3k dependents
yihui
xfun:Supporting Functions for Packages Maintained by 'Yihui Xie'
Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Maintained by Yihui Xie. Last updated 3 days ago.
7.7 match 145 stars 18.18 score 916 scripts 4.4k dependents
dyfanjones
urlparse:Fast Simple URL Parser
A fast and simple 'URL' parser package for 'R'. This package provides functions to parse 'URLs' into their components, such as scheme, user, password, host, port, path, query, and fragment.
Maintained by Dyfan Jones. Last updated 1 months ago.
31.8 match 7 stars 4.02 score
jeroen
curl:A Modern and Flexible Web Client for R
Bindings to 'libcurl' <https://curl.se/libcurl/> for performing fully configurable HTTP/FTP requests where responses can be processed in memory, on disk, or streaming via the callback or connection interfaces. Some knowledge of 'libcurl' is recommended; for a more-user-friendly web client see the 'httr2' package which builds on this package with http specific tools and logic.
Maintained by Jeroen Ooms. Last updated 22 days ago.
6.3 match 224 stars 19.98 score 4.0k scripts 5.9k dependents
henrikbengtsson
R.utils:Various Programming Utilities
Utility functions useful when programming and developing R packages.
Maintained by Henrik Bengtsson. Last updated 1 years ago.
9.1 match 63 stars 13.74 score 5.7k scripts 814 dependents
hrbrmstr
longurl:Expand Short 'URLs'
Tools are provided to expand vectors of short URLs into long 'URLs'. No 'API' services are used, which may mean that this operates more slowly than 'API' services do (since they usually cache results of expansions that every user of the service requests). You can setup your own caching layer with the 'memoise' package if you wish to have a speedup during single sessions or add larger dependencies, such as 'Redis', to gain a longer-term performance boost at the expense of added complexity.
Maintained by Bob Rudis. Last updated 5 years ago.
27.3 match 33 stars 4.56 score 22 scripts
bioc
biodb:biodb, a library and a development framework for connecting to chemical and biological databases
The biodb package provides access to standard remote chemical and biological databases (ChEBI, KEGG, HMDB, ...), as well as to in-house local database files (CSV, SQLite), with easy retrieval of entries, access to web services, search of compounds by mass and/or name, and mass spectra matching for LCMS and MSMS. Its architecture as a development framework facilitates the development of new database connectors for local projects or inside separate published packages.
Maintained by Pierrick Roger. Last updated 5 months ago.
softwareinfrastructuredataimportkeggbiologycheminformaticschemistrydatabasescpp
15.4 match 11 stars 7.85 score 24 scripts 6 dependents
usepa
ctxR:Utilities for Interacting with the 'CTX' APIs
Access chemical, hazard, bioactivity, and exposure data from the Computational Toxicology and Exposure ('CTX') APIs <https://www.epa.gov/comptox-tools/computational-toxicology-and-exposure-apis>. 'ctxR' was developed to streamline the process of accessing the information available through the 'CTX' APIs without requiring prior knowledge of how to use APIs. Most data is also available on the CompTox Chemical Dashboard ('CCD') <https://comptox.epa.gov/dashboard/> and other resources found at the EPA Computational Toxicology and Exposure Online Resources <https://www.epa.gov/comptox-tools>.
Maintained by Paul Kruse. Last updated 2 months ago.
15.0 match 10 stars 8.02 score 13 scripts 1 dependents
talgalili
installr:Using R to Install Stuff on Windows OS (Such As: R, 'Rtools', 'RStudio', 'Git', and More!)
R is great for installing software. Through the 'installr' package you can automate the updating of R (on Windows, using updateR()) and install new software. Software installation is initiated through a GUI (just run installr()), or through functions such as: install.Rtools(), install.pandoc(), install.git(), and many more. The updateR() command performs the following: finding the latest R version, downloading it, running the installer, deleting the installation file, copy and updating old packages to the new R installation.
Maintained by Tal Galili. Last updated 1 years ago.
11.3 match 273 stars 10.19 score 1.2k scripts
crunch-io
crunch:Crunch.io Data Tools
The Crunch.io service <https://crunch.io/> provides a cloud-based data store and analytic engine, as well as an intuitive web interface. Using this package, analysts can interact with and manipulate Crunch datasets from within R. Importantly, this allows technical researchers to collaborate naturally with team members, managers, and clients who prefer a point-and-click interface.
Maintained by Greg Freedman Ellis. Last updated 11 days ago.
10.5 match 9 stars 10.53 score 200 scripts 2 dependentsusepa
ccdR:Utilities for Interacting with the 'CTX' APIs
Access chemical, hazard, bioactivity, and exposure data from the Computational Toxicology and Exposure ('CTX') APIs <https://api-ccte.epa.gov/docs/>. 'ccdR' was developed to streamline the process of accessing the information available through the 'CTX' APIs without requiring prior knowledge of how to use APIs. Most data is also available on the CompTox Chemical Dashboard ('CCD') <https://comptox.epa.gov/dashboard/> and other resources found at the EPA Computational Toxicology and Exposure Online Resources <https://www.epa.gov/comptox-tools>.
Maintained by Paul Kruse. Last updated 8 months ago.
16.9 match 2 stars 6.38 score 7 scriptsbioc
rWikiPathways:rWikiPathways - R client library for the WikiPathways API
Use this package to interface with the WikiPathways API. It provides programmatic access to WikiPathways content in multiple data and image formats, including official monthly release files and convenient GMT read/write functions.
Maintained by Egon Willighagen. Last updated 5 months ago.
visualizationgraphandnetworkthirdpartyclientnetworkmetabolomicsbioinformaticsdata-accesspathways
11.4 match 15 stars 9.23 score 131 scripts 3 dependents
ropenspain
opendataes:Interact with the datos.gob.es API to download public data from all of Spain
Easily interact with the API from http://datos.gob.es to download data over 19,000 files from all different provinces of Spain.
Maintained by Jorge Cimentada. Last updated 4 years ago.
27.6 match 20 stars 3.60 score 9 scripts
pharmar
riskmetric:Risk Metrics to Evaluating R Packages
Facilities for assessing R packages against a number of metrics to help quantify their robustness.
Maintained by Eli Miller. Last updated 9 days ago.
10.5 match 167 stars 8.89 score 43 scripts
gastonbecerra
ojsr:Crawler and Data Scraper for Open Journal System ('OJS')
Crawler for 'OJS' pages and scraper for meta-data from articles. You can crawl 'OJS' archives, issues, articles, galleys, and search results. You can scrape articles metadata from their head tag in html, or from Open Archives Initiative ('OAI') records. Most of these functions rely on 'OJS' routing conventions (<https://docs.pkp.sfu.ca/dev/documentation/en/architecture-routes>).
Maintained by Gaston Becerra. Last updated 4 months ago.
20.8 match 3 stars 4.35 score 15 scripts
giocomai
castarter:Content Analysis Starter Toolkit
Consistent approaches for basic web scraping, text mining and word frequency analysis of textual datasets
Maintained by Giorgio Comai. Last updated 1 days ago.
19.8 match 3 stars 4.52 score 2 scripts
hubverse-org
hubUtils:Core 'hubverse' Utilities
Core set of low-level utilities common across the 'hubverse'. Used to interact with 'hubverse' schema, Hub configuration files and model outputs and designed to be primarily used internally by other 'hubverse' packages. See Reich et al. (2022) <doi:10.2105/AJPH.2022.306831> for an overview of Collaborative Hubs.
Maintained by Anna Krystalli. Last updated 4 days ago.
12.4 match 6 stars 7.22 score 49 scripts 7 dependents
ropensci
piggyback:Managing Larger Data on a GitHub Repository
Helps store files as GitHub release assets, which is a convenient way for large/binary data files to piggyback onto public and private GitHub repositories. Includes functions for file downloads, uploads, and managing releases via the GitHub API.
Maintained by Carl Boettiger. Last updated 4 months ago.
data-storegit-lfspeer-reviewed
6.8 match 187 stars 12.98 score 187 scripts 12 dependentsbioc
seqsetvis:Set Based Visualizations for Next-Gen Sequencing Data
seqsetvis enables the visualization and analysis of sets of genomic sites in next gen sequencing data. Although seqsetvis was designed for the comparison of mulitple ChIP-seq samples, this package is domain-agnostic and allows the processing of multiple genomic coordinate files (bed-like files) and signal files (bigwig files pileups from bam file). seqsetvis has multiple functions for fetching data from regions into a tidy format for analysis in data.table or tidyverse and visualization via ggplot2.
Maintained by Joseph R Boyd. Last updated 3 months ago.
softwarechipseqmultiplecomparisonsequencingvisualization
14.2 match 5.82 score 82 scriptsropensci
git2r:Provides Access to Git Repositories
Interface to the 'libgit2' library, which is a pure C implementation of the 'Git' core methods. Provides access to 'Git' repositories to extract data and running some basic 'Git' commands.
Maintained by Stefan Widgren. Last updated 12 days ago.
gitgit-clientlibgit2libgit2-library
5.7 match 218 stars 13.86 score 836 scripts 49 dependents
fawda123
rStrava:Access the 'Strava' API
Functions to access data from the 'Strava v3 API' <https://developers.strava.com/>.
Maintained by Marcus W. Beck. Last updated 5 months ago.
10.8 match 155 stars 7.15 score 57 scripts
doi-usgs
dataRetrieval:Retrieval Functions for USGS and EPA Hydrology and Water Quality Data
Collection of functions to help retrieve U.S. Geological Survey and U.S. Environmental Protection Agency water quality and hydrology data from web services. Data are discovered from National Water Information System <https://waterservices.usgs.gov/> and <https://waterdata.usgs.gov/nwis>. Water quality data are obtained from the Water Quality Portal <https://www.waterqualitydata.us/>.
Maintained by Laura DeCicco. Last updated 18 days ago.
5.3 match 280 stars 14.18 score 1.7k scripts 15 dependentsr-lib
urlchecker:Run CRAN URL Checks from Older R Versions
Provide the URL checking tools available in R 4.1+ as a package for earlier versions of R. Also uses concurrent requests so can be much faster than the serial versions.
Maintained by Gábor Csárdi. Last updated 7 months ago.
7.4 match 47 stars 10.00 score 15 scripts 151 dependents
jhudsl
ottrpal:Companion Tools for Open-Source Tools for Training Resources (OTTR)
Tools for converting Open-Source Tools for Training Resources (OTTR) courses into Leanpub or Coursera courses. 'ottrpal' is for use with the OTTR Template repository to create courses.
Maintained by Candace Savonen. Last updated 13 days ago.
11.2 match 3 stars 6.50 score 10 scripts 1 dependentsrstudio
pins:Pin, Discover, and Share Resources
Publish data sets, models, and other R objects, making it easy to share them across projects and with your colleagues. You can pin objects to a variety of "boards", including local folders (to share on a networked drive or with 'DropBox'), 'Posit Connect', 'AWS S3', and more.
Maintained by Julia Silge. Last updated 1 months ago.
azuregcloudrpinsrsconnects3storage
5.1 match 321 stars 14.17 score 1.9k scripts 17 dependents
cboettig
contentid:An Interface for Content-Based Identifiers
An interface for creating, registering, and resolving content-based identifiers for data management. Content-based identifiers rely on the 'cryptographic' hashes to refer to the files they identify, thus, anyone possessing the file can compute the identifier using a well-known standard algorithm, such as 'SHA256'. By registering a URL at which the content is accessible to a public archive (such as Hash Archive) or depositing data in a scientific repository such 'Zenodo', 'DataONE' or 'SoftwareHeritage', the content identifier can serve many functions typically associated with A Digital Object Identifier ('DOI'). Unlike location-based identifiers like 'DOIs', content-based identifiers permit the same content to be registered in many locations.
Maintained by Carl Boettiger. Last updated 2 months ago.
9.3 match 46 stars 7.59 score 108 scripts 3 dependents
neonscience
neonUtilities:Utilities for Working with NEON Data
NEON data packages can be accessed through the NEON Data Portal <https://www.neonscience.org> or through the NEON Data API (see <https://data.neonscience.org/data-api> for documentation). Data delivered from the Data Portal are provided as monthly zip files packaged within a parent zip file, while individual files can be accessed from the API. This package provides tools that aid in discovering, downloading, and reformatting data prior to use in analyses. This includes downloading data via the API, merging data tables by type, and converting formats. For more information, see the readme file at <https://github.com/NEONScience/NEON-utilities>.
Maintained by Claire Lunch. Last updated 1 months ago.
6.5 match 57 stars 10.66 score 944 scripts 15 dependents
nx10
httpgd:A 'HTTP' Server Graphics Device
A graphics device for R that is accessible via network protocols. This package was created to make it easier to embed live R graphics in integrated development environments and other applications. The included 'HTML/JavaScript' client (plot viewer) aims to provide a better overall user experience when dealing with R graphics. The device asynchronously serves graphics via 'HTTP' and 'WebSockets'.
Maintained by Florian Rupprecht. Last updated 21 hours ago.
6.0 match 428 stars 11.01 score 280 scripts 1 dependentsbioc
GSEABase:Gene set enrichment data structures and methods
This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).
Maintained by Bioconductor Package Maintainer. Last updated 1 months ago.
geneexpressiongenesetenrichmentgraphandnetworkgokegg
6.0 match 10.27 score 1.5k scripts 77 dependents
pecanproject
PEcAn.data.atmosphere:PEcAn Functions Used for Managing Climate Driver Data
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The PECAn.data.atmosphere package converts climate driver data into a standard format for models integrated into PEcAn. As a standalone package, it provides an interface to access diverse climate data sets.
Maintained by David LeBauer. Last updated 2 days ago.
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
5.3 match 216 stars 11.59 score 64 scripts 14 dependents
sebastien-plutniak
archeoViz:Visualisation, Exploration, and Web Communication of Archaeological Spatial Data
An R 'Shiny' application for visual and statistical exploration and web communication of archaeological spatial data, either remains or sites. It offers interactive 3D and 2D visualisations (cross sections and maps of remains, timeline of the work made in a site) which can be exported in SVG and HTML formats. It performs simple spatial statistics (convex hull, regression surfaces, 2D kernel density estimation) and allows exporting data to other online applications for more complex methods. 'archeoViz' can be used offline locally or deployed on a server, either with interactive input of data or with a static data set. Example is provided at <https://analytics.huma-num.fr/archeoviz/en>.
Maintained by Sebastien Plutniak. Last updated 1 months ago.
archaeologyarcheologydata-visualization
8.2 match 19 stars 7.23 score 6 scriptsgesistsa
webtrackR:Preprocessing and Analyzing Web Tracking Data
Data structures and methods to work with web tracking data. The functions cover data preprocessing steps, enriching web tracking data with external information and methods for the analysis of digital behavior as used in several academic papers (e.g., Clemm von Hohenberg et al., 2023 <doi:10.17605/OSF.IO/M3U9P>; Stier et al., 2022 <doi:10.1017/S0003055421001222>).
Maintained by David Schoch. Last updated 3 months ago.
9.8 match 9 stars 6.03 score 8 scriptsropensci
geojsonio:Convert Data from and to 'GeoJSON' or 'TopoJSON'
Convert data to 'GeoJSON' or 'TopoJSON' from various R classes, including vectors, lists, data frames, shape files, and spatial classes. 'geojsonio' does not aim to replace packages like 'sp', 'rgdal', 'rgeos', but rather aims to be a high level client to simplify conversions of data from and to 'GeoJSON' and 'TopoJSON'.
Maintained by Michael Mahoney. Last updated 1 years ago.
geojsontopojsongeospatialconversiondatainput-outputio
5.3 match 151 stars 10.80 score 2.9k scripts 13 dependentsropensci
crul:HTTP Client
A simple HTTP client, with tools for making HTTP requests, and mocking HTTP requests. The package is built on R6, and takes inspiration from Ruby's 'faraday' gem (<https://rubygems.org/gems/faraday>). The package name is a play on curl, the widely used command line tool for HTTP, and this package is built on top of the R package 'curl', an interface to 'libcurl' (<https://curl.se/libcurl/>).
Maintained by Scott Chamberlain. Last updated 8 months ago.
httphttpsapiweb-servicescurldownloadlibcurlasyncmockingcaching
4.0 match 107 stars 14.00 score 240 scripts 162 dependents
elipousson
esri2sf:Create Simple Features from ArcGIS Server REST API
This package enables you to scrape geographic features directly from ArcGIS servers REST API into R as simple features.
Maintained by Eli Pousson. Last updated 4 months ago.
10.4 match 7 stars 5.28 score 50 scripts 1 dependentsr-lib
xopen:Open System Files, 'URLs', Anything
Cross platform solution to open files, directories or 'URLs' with their associated programs.
Maintained by Gábor Csárdi. Last updated 4 months ago.
5.4 match 31 stars 10.00 score 40 scripts 161 dependentsropensci
osmextract:Download and Import Open Street Map Data Extracts
Match, download, convert and import Open Street Map data extracts obtained from several providers.
Maintained by Andrea Gilardi. Last updated 2 months ago.
geogeofabrik-zoneopen-dataosmosm-pbf
5.5 match 173 stars 9.73 score 342 scripts
dataoneorg
dataone:R Interface to the DataONE REST API
Provides read and write access to data and metadata from the DataONE network <https://www.dataone.org> of data repositories. Each DataONE repository implements a consistent repository application programming interface. Users call methods in R to access these remote repository functions, such as methods to query the metadata catalog, get access to metadata for particular data packages, and read the data objects from the data repository. Users can also insert and update data objects on repositories that support these methods.
Maintained by Matthew B. Jones. Last updated 3 years ago.
5.3 match 36 stars 9.93 score 472 scripts 3 dependentsr-lib
rex:Friendly Regular Expressions
A friendly interface for the construction of regular expressions.
Maintained by Kevin Ushey. Last updated 1 years ago.
3.8 match 335 stars 14.17 score 178 scripts 95 dependents
edjnet
tidywikidatar:Explore 'Wikidata' Through Tidy Data Frames
Query 'Wikidata' API <https://www.wikidata.org/wiki/Wikidata:Main_Page> with ease, get tidy data frames in response, and cache data in a local database.
Maintained by Giorgio Comai. Last updated 8 months ago.
6.7 match 26 stars 7.86 score 46 scripts 2 dependents
quandl
Quandl:API Wrapper for Quandl.com
Functions for interacting directly with the Quandl API to offer data in a number of formats usable in R, downloading a zip with all data from a Quandl database, and the ability to search. This R package uses the Quandl API. For more information go to <https://docs.quandl.com>. For more help on the package itself go to <https://www.quandl.com/tools/r>.
Maintained by Dave Dotson. Last updated 3 years ago.
5.4 match 137 stars 9.74 score 980 scripts 3 dependentsbioc
igvR:igvR: integrative genomics viewer
Access to igv.js, the Integrative Genomics Viewer running in a web browser.
Maintained by Arkadiusz Gladki. Last updated 5 months ago.
visualizationthirdpartyclientgenomebrowsers
6.2 match 43 stars 8.31 score 118 scripts
themains
virustotal:R Client for the VirusTotal API
Use VirusTotal, a Google service that analyzes files and URLs for viruses, worms, trojans etc., provides category of the content hosted by a domain from a variety of prominent services, provides passive DNS information, among other things. See <http://www.virustotal.com> for more information.
Maintained by Gaurav Sood. Last updated 2 years ago.
cybersecurityscan-filestrojansvirustotal
9.2 match 11 stars 5.47 score 18 scripts 1 dependents
paleolimbot
rosm:Plot Raster Map Tiles from Open Street Map and Other Sources
Download and plot Open Street Map <https://www.openstreetmap.org/>, Bing Maps <https://www.bing.com/maps> and other tiled map sources. Use to create basemaps quickly and add hillshade to vector-based maps.
Maintained by Dewey Dunnington. Last updated 2 years ago.
6.0 match 27 stars 8.23 score 130 scripts 26 dependents
cran
RCurl:General Network (HTTP/FTP/...) Client Interface for R
A wrapper for 'libcurl' <https://curl.se/libcurl/> Provides functions to allow one to compose general HTTP requests and provides convenient functions to fetch URIs, get & post forms, etc. and process the results returned by the Web server. This provides a great deal of control over the HTTP/FTP/... connection and the form of the request while providing a higher-level interface than is available just using R socket connections. Additionally, the underlying implementation is robust and extensive, supporting FTP/FTPS/TFTP (uploads and downloads), SSL/HTTPS, telnet, dict, ldap, and also supports cookies, redirects, authentication, etc.
Maintained by CRAN Team. Last updated 8 months ago.
6.0 match 2 stars 8.13 score 1.0k dependents
sumidu
gghilbertstrings:A Fast 'ggplot2'-Based Implementation of Hilbert Curves
A set of functions that help to create plots based on Hilbert curves. Hilbert curves are used to map one dimensional data into the 2D plane. The package provides a function that generate a 2D coordinate from an integer position. As a specific use case the package provides a function that allows mapping a character column in a data frame into 2D space using 'ggplot2'. This allows visually comparing long lists of URLs, words, genes or other data that has a fixed order and position.
Maintained by André Calero Valdez. Last updated 4 years ago.
genetic-analysisggplothilbert-curvesurlcpp
11.5 match 16 stars 4.20 score 20 scripts
dreamrs
datamods:Modules to Import and Manipulate Data in 'Shiny'
'Shiny' modules to import data into an application or 'addin' from various sources, and to manipulate them after that.
Maintained by Victor Perrier. Last updated 11 days ago.
4.0 match 144 stars 12.03 score 174 scripts 7 dependents
vusaverse
vvtableau:R Interface for 'Tableau' Services
Provides an R interface for interacting with the 'Tableau' Server. It allows users to perform various operations such as publishing workbooks, refreshing data extracts, and managing users using the 'Tableau' REST API (see <https://help.tableau.com/current/api/rest_api/en-us/REST/rest_api_ref.htm> for details). Additionally, it includes functions to perform manipulations on local 'Tableau' workbooks.
Maintained by Tomer Iwan. Last updated 7 months ago.
rest-apitableautableau-dashboardstableau-desktoptableau-rest-apitableau-server
7.5 match 7 stars 6.25 score 16 scripts
irworkshop
campfin:Wrangle Campaign Finance Data
Explore and normalize American campaign finance data. Created by the Investigative Reporting Workshop to facilitate work on The Accountability Project, an effort to collect public data into a central, standard database that is more easily searched: <https://publicaccountability.org/>.
Maintained by Kiernan Nicholls. Last updated 1 years ago.
campaign-financedata-journalism
8.3 match 17 stars 5.66 score 54 scriptsropensci
ruODK:An R Client for the ODK Central API
Access and tidy up data from the 'ODK Central' API. 'ODK Central' is a clearinghouse for digitally captured data using ODK <https://docs.getodk.org/central-intro/>. It manages user accounts and permissions, stores form definitions, and allows data collection clients like 'ODK Collect' to connect to it for form download and submission upload. The 'ODK Central' API is documented at <https://docs.getodk.org/central-api/>.
Maintained by Florian W. Mayer. Last updated 4 months ago.
databaseopen-dataodkapidatadatasetodataodata-clientodk-centralopendatakit
6.0 match 42 stars 7.73 score 57 scripts 1 dependents
jbkunst
highcharter:A Wrapper for the 'Highcharts' Library
A wrapper for the 'Highcharts' library including shortcut functions to plot R objects. 'Highcharts' <https://www.highcharts.com/> is a charting library offering numerous chart types with a simple configuration syntax.
Maintained by Joshua Kunst. Last updated 1 years ago.
highchartshtmlwidgetsshinyshiny-rvisualizationwrapper
3.3 match 725 stars 13.93 score 4.9k scripts 18 dependents
justincally
VicmapR:Access Victorian Spatial Data Through Web File Services (WFS)
Easily interfaces R to spatial datasets available through the Victorian Government's WFS (Web Feature Service): <https://opendata.maps.vic.gov.au/geoserver/ows?request=GetCapabilities&service=wfs>, which allows users to read in 'sf' data from these sources. VicmapR uses the lazy querying approach and code developed by Teucher et al. (2021) for the 'bcdata' R package <doi:10.21105/joss.02927>.
Maintained by Justin Cally. Last updated 6 months ago.
7.5 match 17 stars 6.14 score 18 scripts
walkerke
mapgl:Interactive Maps with 'Mapbox GL JS' and 'MapLibre GL JS'
Provides an interface to the 'Mapbox GL JS' (<https://docs.mapbox.com/mapbox-gl-js/guides>) and the 'MapLibre GL JS' (<https://maplibre.org/maplibre-gl-js/docs/>) interactive mapping libraries to help users create custom interactive maps in R. Users can create interactive globe visualizations; layer 'sf' objects to create filled maps, circle maps, 'heatmaps', and three-dimensional graphics; and customize map styles and views. The package also includes utilities to use 'Mapbox' and 'MapLibre' maps in 'Shiny' web applications.
Maintained by Kyle Walker. Last updated 1 days ago.
5.6 match 114 stars 8.06 score 138 scripts
maxconway
gsheet:Download Google Sheets Using Just the URL
Simple package to download Google Sheets using just the sharing link. Spreadsheets can be downloaded as a data frame, or as plain text to parse manually. Google Sheets is the new name for Google Docs Spreadsheets <https://www.google.com/sheets/about>.
Maintained by Max Conway. Last updated 5 years ago.
5.7 match 55 stars 7.86 score 1.3k scripts 4 dependents
alshum
rwunderground:R Interface to Weather Underground API
Tools for getting historical weather information and forecasts from wunderground.com. Historical weather and forecast data includes, but is not limited to, temperature, humidity, windchill, wind speed, dew point, heat index. Additionally, the weather underground weather API also includes information on sunrise/sunset, tidal conditions, satellite/webcam imagery, weather alerts, hurricane alerts and historical high/low temperatures.
Maintained by Eric Hare. Last updated 7 years ago.
weatherweather-dataweather-historyweather-underground
7.2 match 77 stars 6.20 score 83 scripts
pgomba
MDPIexploreR:Web Scraping and Bibliometric Analysis of MDPI Journals
Provides comprehensive tools to scrape and analyze data from the MDPI journals. It allows users to extract metrics such as submission-to-acceptance times, article types, and whether articles are part of special issues. The package can also visualize this information through plots. Additionally, 'MDPIexploreR' offers tools to explore patterns of self-citations within articles and provides insights into guest-edited special issues.
Maintained by Pablo Gómez Barreiro. Last updated 4 months ago.
analysisdata-analysisdata-visualizationmdpimetricsscientific-journalsvisualizationweb-scraping
7.2 match 20 stars 6.20 score 9 scriptsr-lib
pak:Another Approach to Package Installation
The goal of 'pak' is to make package installation faster and more reliable. In particular, it performs all HTTP operations in parallel, so metadata resolution and package downloads are fast. Metadata and package files are cached on the local disk as well. 'pak' has a dependency solver, so it finds version conflicts before performing the installation. This version of 'pak' supports CRAN, 'Bioconductor' and 'GitHub' packages as well.
Maintained by Gábor Csárdi. Last updated 11 hours ago.
3.4 match 717 stars 13.05 score 277 scripts 17 dependents
polar-fhir
fhircrackr:Handling HL7 FHIR® Resources in R
Useful tools for conveniently downloading FHIR resources in xml format and converting them to R data.frames. The package uses FHIR-search to download bundles from a FHIR server, provides functions to save and read xml-files containing such bundles and allows flattening the bundles to data.frames using XPath expressions. FHIR® is the registered trademark of HL7 and is used with the permission of HL7. Use of the FHIR trademark does not constitute endorsement of this product by HL7.
Maintained by Julia Palm. Last updated 11 days ago.
5.8 match 33 stars 7.63 score 46 scriptsropensci
tarchetypes:Archetypes for Targets
Function-oriented Make-like declarative pipelines for Statistics and data science are supported in the 'targets' R package. As an extension to 'targets', the 'tarchetypes' package provides convenient user-side functions to make 'targets' easier to use. By establishing reusable archetypes for common kinds of targets and pipelines, these functions help express complicated reproducible pipelines concisely and compactly. The methods in this package were influenced by the 'targets' R package. by Will Landau (2018) <doi:10.21105/joss.00550>.
Maintained by William Michael Landau. Last updated 20 days ago.
data-sciencehigh-performance-computingpeer-reviewedpipeliner-targetopiareproducibilitytargetsworkflow
3.8 match 141 stars 11.43 score 1.7k scripts 10 dependents
markedmondson1234
googleAuthR:Authenticate and Create Google APIs
Create R functions that interact with OAuth2 Google APIs <https://developers.google.com/apis-explorer/> easily, with auto-refresh and Shiny compatibility.
Maintained by Erik Grönroos. Last updated 10 months ago.
apiauthenticationgooglegoogleauthroauth2-flowshiny
3.3 match 178 stars 12.84 score 804 scripts 13 dependentsropensci
beastier:Call 'BEAST2'
'BEAST2' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'BEAST2' is a command-line tool. This package provides a way to call 'BEAST2' from an 'R' function call.
Maintained by Richèl J.C. Bilderbeek. Last updated 23 days ago.
bayesianbeastbeast2phylogenetic-inferencephylogeneticsopenjdk
5.3 match 11 stars 7.87 score 47 scripts 4 dependents
cloudyr
googleCloudStorageR:Interface with Google Cloud Storage API
Interact with Google Cloud Storage <https://cloud.google.com/storage/> API in R. Part of the 'cloudyr' <https://cloudyr.github.io/> project.
Maintained by Mark Edmondson. Last updated 4 days ago.
apiapi-clientgoogle-cloud-storagegoogleauthr
4.0 match 104 stars 10.28 score 548 scripts 1 dependentsyihui
knitr:A General-Purpose Package for Dynamic Report Generation in R
Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.
Maintained by Yihui Xie. Last updated 2 days ago.
dynamic-documentsknitrliterate-programmingrmarkdownsweave
1.7 match 2.4k stars 23.62 score 116k scripts 4.2k dependents
ijlyttle
vembedr:Embed Video in HTML
A set of functions for generating HTML to embed hosted video in your R Markdown documents or Shiny applications.
Maintained by Ian Lyttle. Last updated 3 years ago.
boxembed-videosrmarkdownshinyvimeoyoutube
5.1 match 58 stars 7.83 score 520 scripts
szymanskir
rnbp:Wrapper for the National Bank of Poland API
Use the <http://api.nbp.pl/> API through R. Retrieve currency exchange rates and gold prices data published by the National Bank of Poland in form of convenient R objects.
Maintained by Ryszard Szymanski. Last updated 4 years ago.
10.7 match 3.70 score 4 scripts
ices-tools-prod
icesSAG:Stock Assessment Graphs Database Web Services
R interface to access the web services of the ICES Stock Assessment Graphs database <https://sg.ices.dk>.
Maintained by Colin Millar. Last updated 5 months ago.
6.3 match 11 stars 6.24 score 131 scripts 2 dependentsbioc
recount:Explore and download data from the recount project
Explore and download data from the recount project available at https://jhubiostatistics.shinyapps.io/recount/. Using the recount package you can download RangedSummarizedExperiment objects at the gene, exon or exon-exon junctions level, the raw counts, the phenotype metadata used, the urls to the sample coverage bigWig files or the mean coverage bigWig file for a particular study. The RangedSummarizedExperiment objects can be used by different packages for performing differential expression analysis. Using http://bioconductor.org/packages/derfinder you can perform annotation-agnostic differential expression analyses with the data from the recount project as described at http://www.nature.com/nbt/journal/v35/n4/full/nbt.3838.html.
Maintained by Leonardo Collado-Torres. Last updated 3 months ago.
coveragedifferentialexpressiongeneexpressionrnaseqsequencingsoftwaredataimportimmunooncologyannotation-agnosticbioconductorcountderfinderdeseq2exongenehumanilluminajunctionrecount
4.1 match 41 stars 9.57 score 498 scripts 3 dependentsropensci
rerddap:General Purpose Client for 'ERDDAP™' Servers
General purpose R client for 'ERDDAP™' servers. Includes functions to search for 'datasets', get summary information on 'datasets', and fetch 'datasets', in either 'csv' or 'netCDF' format. 'ERDDAP™' information: <https://upwell.pfeg.noaa.gov/erddap/information.html>.
Maintained by Roy Mendelssohn. Last updated 2 days ago.
earthscienceclimateprecipitationtemperaturestormbuoynoaaapi-clienterddapnoaa-data
3.8 match 41 stars 10.37 score 376 scripts 5 dependents
wch
downloader:Download Files over HTTP and HTTPS
Provides a wrapper for the download.file function, making it possible to download files over HTTPS on Windows, Mac OS X, and other Unix-like platforms. The 'RCurl' package provides this functionality (and much more) but can be difficult to install because it must be compiled with external dependencies. This package has no external dependencies, so it is much easier to install.
Maintained by Winston Chang. Last updated 9 years ago.
3.5 match 33 stars 11.03 score 2.9k scripts 105 dependentsropensci
lingtypology:Linguistic Typology and Mapping
Provides R with the Glottolog database <https://glottolog.org/> and some more abilities for purposes of linguistic mapping. The Glottolog database contains the catalogue of languages of the world. This package helps researchers to make a linguistic maps, using philosophy of the Cross-Linguistic Linked Data project <https://clld.org/>, which allows for while at the same time facilitating uniform access to the data across publications. A tutorial for this package is available on GitHub pages <https://docs.ropensci.org/lingtypology/> and package vignette. Maps created by this package can be used both for the investigation and linguistic teaching. In addition, package provides an ability to download data from typological databases such as WALS, AUTOTYP and some others and to create your own database website.
Maintained by George Moroz. Last updated 5 months ago.
abvdafboatlasautotypebivaltypclldglottolog-databaselinguistic-mapslinguisticsphoiblesailstypologywals
4.0 match 51 stars 9.58 score 694 scripts
bioc
UCSC.utils:Low-level utilities to retrieve data from the UCSC Genome Browser
A set of low-level utilities to retrieve data from the UCSC Genome Browser. Most functions in the package access the data via the UCSC REST API but some of them query the UCSC MySQL server directly. Note that the primary purpose of the package is to support higher-level functionalities implemented in downstream packages like GenomeInfoDb or txdbmaker.
Maintained by Hervé Pagès. Last updated 2 months ago.
infrastructuregenomeassemblyannotationgenomeannotationdataimportbioconductor-packagecore-package
3.8 match 1 stars 10.09 score 4 scripts 1.7k dependentsrstudio
rstudioapi:Safely Access the RStudio API
Access the RStudio API (if available) and provide informative error messages when it's not.
Maintained by Kevin Ushey. Last updated 4 months ago.
2.0 match 172 stars 18.81 score 3.6k scripts 2.1k dependents
alexander-pastukhov
BiDimRegression:Calculates the Bidimensional Regression Between Two 2D Configurations
Calculates the bidimensional regression between two 2D configurations following the approach by Tobler (1965).
Maintained by Alexander Pastukhov. Last updated 3 years ago.
9.3 match 4.00 score 20 scripts
modesto-escobar
wikiTools:Tools for Wikidata and Wikipedia
A set of wrappers intended to check, read and download information from the Wikimedia sources. It is specifically created to work with names of celebrities, in which case their information and statistics can be downloaded. Additionally, it also builds links and snippets to use in combination with the function gallery() in netCoin package.
Maintained by Modesto Escobar. Last updated 8 months ago.
7.3 match 2 stars 5.08 score 2 scripts
gmbecker
switchr:Installing, Managing, and Switching Between Distinct Sets of Installed Packages
Provides an abstraction for managing, installing, and switching between sets of installed R packages. This allows users to maintain multiple package libraries simultaneously, e.g. to maintain strict, package-version-specific reproducibility of many analyses, or work within a development/production release paradigm. Introduces a generalized package installation process which supports multiple repository and non-repository sources and tracks package provenance.
Maintained by Gabriel Becker. Last updated 2 years ago.
5.7 match 59 stars 6.49 score 52 scripts
crazycapivara
mapboxer:An R Interface to 'Mapbox GL JS'
Makes 'Mapbox GL JS' <https://docs.mapbox.com/mapbox-gl-js/api/>, an open source JavaScript library that uses WebGL to render interactive maps, available within R via the 'htmlwidgets' package. Visualizations can be used from the R console, in R Markdown documents and in Shiny apps.
Maintained by Stefan Kuethe. Last updated 3 years ago.
htmlwidgetsmapbox-gl-jsspatialwebgl
5.5 match 55 stars 6.61 score 49 scripts 1 dependents
idigbio
ridigbio:Interface to the iDigBio Data API
An interface to iDigBio's search API that allows downloading specimen records. Searches are returned as a data.frame. Other functions such as the metadata end points return lists of information. iDigBio is a US project focused on digitizing and serving museum specimen collections on the web. See <https://www.idigbio.org> for information on iDigBio.
Maintained by Jesse Bennett. Last updated 5 days ago.
3.6 match 16 stars 10.23 score 63 scripts 7 dependents
nflverse
nflfastR:Functions to Efficiently Access NFL Play by Play Data
A set of functions to access National Football League play-by-play data from <https://www.nfl.com/>.
Maintained by Ben Baldwin. Last updated 2 months ago.
american-footballfootball-datanflnflstatsnflversesports-analytics
3.5 match 442 stars 10.40 score 596 scripts 3 dependentsropensci
cffr:Generate Citation File Format ('cff') Metadata for R Packages
The Citation File Format version 1.2.0 <doi:10.5281/zenodo.5171937> is a human and machine readable file format which provides citation metadata for software. This package provides core utilities to generate and validate this metadata.
Maintained by Diego Hernangómez. Last updated 4 days ago.
attributioncitationcreditcitation-filescffmetadatacitation-file-formatropensci
3.7 match 26 stars 9.74 score 116 scripts 3 dependentsrstudio
htmltools:Tools for HTML
Tools for HTML generation and output.
Maintained by Carson Sievert. Last updated 10 months ago.
2.0 match 218 stars 17.61 score 10k scripts 4.5k dependents
cjendres1
nhanesA:NHANES Data Retrieval
Utility to retrieve data from the National Health and Nutrition Examination Survey (NHANES) website <https://www.cdc.gov/nchs/nhanes/>.
Maintained by Christopher Endres. Last updated 2 months ago.
3.8 match 59 stars 9.37 score 239 scriptscran
arcpullr:Pull Data from an 'ArcGIS REST' API
Functions to efficiently query 'ArcGIS REST' APIs <https://developers.arcgis.com/rest/>. Both spatial and SQL queries can be used to retrieve data. Simple Feature (sf) objects are utilized to perform spatial queries. This package was neither produced nor is maintained by Esri.
Maintained by Paul Frater. Last updated 1 months ago.
8.8 match 3.95 score 1 dependentsr-lib
remotes:R Package Installation from Remote Repositories, Including 'GitHub'
Download and install R packages stored in 'GitHub', 'GitLab', 'Bitbucket', 'Bioconductor', or plain 'subversion' or 'git' repositories. This package provides the 'install_*' functions in 'devtools'. Indeed most of the code was copied over from 'devtools'.
Maintained by Gábor Csárdi. Last updated 19 days ago.
2.0 match 341 stars 17.30 score 5.8k scripts 248 dependentsrstudio
gt:Easily Create Presentation-Ready Display Tables
Build display tables from tabular data with an easy-to-use set of functions. With its progressive approach, we can construct display tables with a cohesive set of table parts. Table values can be formatted using any of the included formatting functions. Footnotes and cell styles can be precisely added through a location targeting system. The way in which 'gt' handles things for you means that you don't often have to worry about the fine details.
Maintained by Richard Iannone. Last updated 11 days ago.
docxeasy-to-usehtmllatexrtfsummary-tables
1.9 match 2.1k stars 18.36 score 20k scripts 112 dependents
yulab-smu
scholar:Analyse Citation Data from Google Scholar
Provides functions to extract citation data from Google Scholar. Convenience functions are also provided for comparing multiple scholars and predicting future h-index values.
Maintained by Guangchuang Yu. Last updated 1 years ago.
3.5 match 43 stars 9.63 score 468 scripts 3 dependents
richelbilderbeek
netmhc2pan:Interface to 'NetMHCIIpan'
The field of immunology benefits from software that can predict which peptide sequences trigger an immune response. 'NetMHCIIpan' is a such a tool: it predicts the binding strength of a short peptide to a Major Histocompatibility Complex class II (MHC-II) molecule. 'NetMHCIIpan' can be used from a web server at <https://services.healthtech.dtu.dk/services/NetMHCIIpan-3.2/> or from the command-line, using a local installation. This package allows to call 'NetMHCIIpan' from R.
Maintained by Richèl J.C. Bilderbeek. Last updated 8 months ago.
9.2 match 1 stars 3.70 score 8 scriptsbioc
OmaDB:R wrapper for the OMA REST API
A package for the orthology prediction data download from OMA database.
Maintained by Klara Kaleb. Last updated 5 months ago.
softwarecomparativegenomicsfunctionalgenomicsgeneticsannotationgofunctionalprediction
5.4 match 2 stars 6.23 score 5 scripts
hneth
unikn:Graphical Elements of the University of Konstanz's Corporate Design
Define and use graphical elements of corporate design manuals in R. The 'unikn' package provides color functions (by defining dedicated colors and color palettes, and commands for finding, changing, viewing, and using them) and styled text elements (e.g., for marking, underlining, or plotting colored titles). The pre-defined range of colors and text decoration functions is based on the corporate design of the University of Konstanz <https://www.uni-konstanz.de/>, but can be adapted and extended for other purposes or institutions.
Maintained by Hansjoerg Neth. Last updated 3 months ago.
brandingcolorcolor-palettecolorschemecorporate-designpalettetext-decorationuniversity-colorsvisual-identity
3.8 match 39 stars 8.82 score 156 scripts 2 dependents
harrelfe
Hmisc:Harrell Miscellaneous
Contains many functions useful for data analysis, high-level graphics, utility operations, functions for computing sample size and power, simulation, importing and annotating datasets, imputing missing values, advanced table making, variable clustering, character string manipulation, conversion of R objects to LaTeX and html code, recoding variables, caching, simplified parallel computing, encrypting and decrypting data using a safe workflow, general moving window statistical estimation, and assistance in interpreting principal component analysis.
Maintained by Frank E Harrell Jr. Last updated 6 hours ago.
1.9 match 210 stars 17.61 score 17k scripts 750 dependentsropensci
UCSCXenaTools:Download and Explore Datasets from UCSC Xena Data Hubs
Download and explore datasets from UCSC Xena data hubs, which are a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others. Databases are normalized so they can be combined, linked, filtered, explored and downloaded.
Maintained by Shixiang Wang. Last updated 5 months ago.
api-clientbioinformaticsccledownloadericgctcgatoiltreehouseucscucsc-xena
3.8 match 106 stars 8.55 score 163 scripts 1 dependentsdyfanjones
weburl:Parse Urls
What the package does (one paragraph).
Maintained by Dyfan Jones. Last updated 6 months ago.
12.3 match 4 stars 2.60 score 10 scripts
hafen
trelliscopejs:Create Interactive Trelliscope Displays
Trelliscope is a scalable, flexible, interactive approach to visualizing data (Hafen, 2013 <doi:10.1109/LDAV.2013.6675164>). This package provides methods that make it easy to create a Trelliscope display specification for TrelliscopeJS. High-level functions are provided for creating displays from within 'tidyverse' or 'ggplot2' workflows. Low-level functions are also provided for creating new interfaces.
Maintained by Ryan Hafen. Last updated 1 years ago.
3.4 match 264 stars 9.50 score 1000 scripts 1 dependents
discindo
newscatcheR:Programmatically Collect Normalized News from (Almost) Any Website
Programmatically collect normalized news from (almost) any website. An 'R' clone of the <https://github.com/kotartemiy/newscatcher> 'Python' module.
Maintained by Novica Nakov. Last updated 1 years ago.
hacktoberfestnews-sitesnewscatcherrss-feedtidyrss
5.6 match 30 stars 5.65 score 7 scriptsr-lib
usethis:Automate Package and Project Setup
Automate package and project setup tasks that are otherwise performed manually. This includes setting up unit testing, test coverage, continuous integration, Git, 'GitHub', licenses, 'Rcpp', 'RStudio' projects, and more.
Maintained by Jennifer Bryan. Last updated 11 days ago.
1.8 match 869 stars 17.54 score 5.6k scripts 336 dependents
mikejohnson51
climateR:climateR
Find, subset, and retrive geospatial data by AOI.
Maintained by Mike Johnson. Last updated 3 months ago.
aoiclimatedatasetgeospatialgridded-climate-dataweather
3.6 match 187 stars 8.74 score 156 scripts 1 dependents
curso-r
auth0:Authentication in Shiny with Auth0
Uses Auth0 API (see <https://auth0.com> for more information) to use a simple authentication system. It provides tools to log in and out a shiny application using social networks or a list of e-mails.
Maintained by Julio Trecenti. Last updated 1 years ago.
auth0authenticationhacktoberfestshiny
4.0 match 156 stars 7.79 score 88 scripts
vegawidget
vegawidget:'Htmlwidget' for 'Vega' and 'Vega-Lite'
'Vega' and 'Vega-Lite' parse text in 'JSON' notation to render chart-specifications into 'HTML'. This package is used to facilitate the rendering. It also provides a means to interact with signals, events, and datasets in a 'Vega' chart using 'JavaScript' or 'Shiny'.
Maintained by Ian Lyttle. Last updated 1 years ago.
3.9 match 68 stars 8.04 score 49 scripts 4 dependentscran
gprofiler2:Interface to the 'g:Profiler' Toolset
A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversion and mapping orthologous genes across species via 'g:Profiler' (<https://biit.cs.ut.ee/gprofiler/>). The main tools are: (1) 'g:GOSt' - functional enrichment analysis and visualization of gene lists; (2) 'g:Convert' - gene/protein/transcript identifier conversion across various namespaces; (3) 'g:Orth' - orthology search across species; (4) 'g:SNPense' - mapping SNP rs identifiers to chromosome positions, genes and variant effects. This package is an R interface corresponding to the 2019 update of 'g:Profiler' and provides access to 'g:Profiler' for versions 'e94_eg41_p11' and higher. See the package 'gProfileR' for accessing older versions from the 'g:Profiler' toolset.
Maintained by Liis Kolberg. Last updated 1 years ago.
3.9 match 4 stars 7.97 score 1.5k scripts 16 dependentsropensci
wikitaxa:Taxonomic Information from 'Wikipedia'
'Taxonomic' information from 'Wikipedia', 'Wikicommons', 'Wikispecies', and 'Wikidata'. Functions included for getting taxonomic information from each of the sources just listed, as well performing taxonomic search.
Maintained by Zachary Foster. Last updated 5 months ago.
taxonomyspeciesapiweb-serviceswikipediavernacularwikispecieswikicommonstaxizewikipedia-api
3.8 match 21 stars 8.05 score 11 scripts 24 dependents
tgve
tgver:Turing Geovisualization Engine R package
Turing Geovisualization Engine R package for geospatial visualization and analysis.
Maintained by Layik Hama. Last updated 2 years ago.
geospatial-analysisgeospatial-visualization
5.5 match 5 stars 5.48 score 3 scripts
ashbythorpe
selenider:Concise, Lazy and Reliable Wrapper for 'chromote' and 'selenium'
A user-friendly wrapper for web automation, using either 'chromote' or 'selenium'. Provides a simple and consistent API to make web scraping and testing scripts easy to write and understand. Elements are lazy, and automatically wait for the website to be valid, resulting in reliable and reproducible code, with no visible impact on the experience of the programmer.
Maintained by Ashby Thorpe. Last updated 2 months ago.
4.1 match 39 stars 7.21 score 23 scripts
usaid-oha-si
grabr:OHA/SI APIs Package
Provides a series of base functions useful to the GH OHA SI team. These function extend the utility functions in glamr, focusing primarily on API utility functions.
Maintained by Aaron Chafetz. Last updated 6 months ago.
5.8 match 1 stars 5.14 score 69 scriptspecanproject
PEcAn.data.remote:PEcAn Functions Used for Extracting Remote Sensing Data
PEcAn module for processing remote data. Python module requirements: requests, json, re, ast, panads, sys. If any of these modules are missing, install using pip install <module name>.
Maintained by Bailey Morrison. Last updated 2 days ago.
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
3.3 match 216 stars 8.74 score 6 scripts 5 dependents
md-anderson-bioinformatics
NGCHM:Next Generation Clustered Heat Maps
Next-Generation Clustered Heat Maps (NG-CHMs) allow for dynamic exploration of heat map data in a web browser. 'NGCHM' allows users to create both stand-alone HTML files containing a Next-Generation Clustered Heat Map, and .ngchm files to view in the NG-CHM viewer. See Ryan MC, Stucky M, et al (2020) <doi:10.12688/f1000research.20590.2> for more details.
Maintained by Mary A Rohrdanz. Last updated 9 days ago.
5.3 match 9 stars 5.48 score 28 scriptsbioc
GEOquery:Get data from NCBI Gene Expression Omnibus (GEO)
The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data. Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.
Maintained by Sean Davis. Last updated 5 months ago.
microarraydataimportonechanneltwochannelsagebioconductorbioinformaticsdata-sciencegenomicsncbi-geo
2.0 match 92 stars 14.46 score 4.1k scripts 44 dependents
diogosmendonca
ApacheLogProcessor:Process the Apache Web Server Log Files
Provides capabilities to process Apache HTTPD Log files.The main functionalities are to extract data from access and error log files to data frames.
Maintained by Diogo Silveira Mendonca. Last updated 7 years ago.
7.7 match 9 stars 3.73 score 12 scripts
mllg
base64url:Fast and URL-Safe Base64 Encoder and Decoder
In contrast to RFC3548, the 62nd character ("+") is replaced with "-", the 63rd character ("/") is replaced with "_". The resulting encoded strings comply to the regular expression pattern "[A-Za-z0-9_-]" and thus are safe to use in URLs or for file names. The package also comes with a simple base32 encoder/decoder suited for case insensitive file systems.
Maintained by Michel Lang. Last updated 5 years ago.
3.4 match 12 stars 8.37 score 15 scripts 68 dependentsbioc
igvShiny:igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)
This package is a wrapper of Integrative Genomics Viewer (IGV). It comprises an htmlwidget version of IGV. It can be used as a module in Shiny apps.
Maintained by Arkadiusz Gladki. Last updated 5 months ago.
softwareshinyappssequencingcoverage
3.9 match 37 stars 7.40 score 120 scriptsbioc
recount3:Explore and download data from the recount3 project
The recount3 package enables access to a large amount of uniformly processed RNA-seq data from human and mouse. You can download RangedSummarizedExperiment objects at the gene, exon or exon-exon junctions level with sample metadata and QC statistics. In addition we provide access to sample coverage BigWig files.
Maintained by Leonardo Collado-Torres. Last updated 3 months ago.
coveragedifferentialexpressiongeneexpressionrnaseqsequencingsoftwaredataimportannotation-agnosticbioconductorcountderfinderexongenehumanilluminajunctionmouserecountrecount3
3.5 match 33 stars 8.03 score 216 scriptsropensci
rsat:Dealing with Multiplatform Satellite Images
Downloading, customizing, and processing time series of satellite images for a region of interest. 'rsat' functions allow a unified access to multispectral images from Landsat, MODIS and Sentinel repositories. 'rsat' also offers capabilities for customizing satellite images, such as tile mosaicking, image cropping and new variables computation. Finally, 'rsat' covers the processing, including cloud masking, compositing and gap-filling/smoothing time series of images (Militino et al., 2018 <doi:10.3390/rs10030398> and Militino et al., 2019 <doi:10.1109/TGRS.2019.2904193>).
Maintained by Unai Pérez - Goya. Last updated 11 months ago.
3.8 match 54 stars 7.45 score 52 scripts
aquincum
Rexperigen:R Interface to Experigen
Provides convenience functions to communicate with an Experigen server: Experigen (<http://github.com/aquincum/experigen>) is an online framework for creating linguistic experiments, and it stores the results on a dedicated server. This package can be used to retrieve the results from the server, and it is especially helpful with registered experiments, as authentication with the server has to happen.
Maintained by Daniel Szeredi. Last updated 9 years ago.
9.6 match 1 stars 2.95 score 18 scripts
feddelegrand7
ralger:Easy Web Scraping
The goal of 'ralger' is to facilitate web scraping in R.
Maintained by Mohamed El Fodil Ihaddaden. Last updated 8 months ago.
dataextractionwebcrawlingwebscraper-websitewebscraping
3.8 match 155 stars 7.41 score 33 scripts
emilio-berti
GHCNr:Download Weather Station Data from GHCNd
The goal of 'GHCNr' is to provide a fast and friendly interface with the Global Historical Climatology Network daily (GHCNd) database, which contains daily summaries of weather station data worldwide (<https://www.ncei.noaa.gov/products/land-based-station/global-historical-climatology-network-daily>). GHCNd is accessed through the web API <https://www.ncei.noaa.gov/access/services/data/v1>. 'GHCNr' main functionalities consist of downloading data from GHCNd, filter it, and to aggregate it at monthly and annual scales.
Maintained by Emilio Berti. Last updated 2 months ago.
5.7 match 2 stars 4.95 score 3 scripts
chicago
RSocrata:Download or Upload 'Socrata' Data Sets
Provides easier interaction with 'Socrata' open data portals <https://dev.socrata.com>. Users can provide a 'Socrata' data set resource URL, or a 'Socrata' Open Data API (SODA) web query, or a 'Socrata' "human-friendly" URL, returns an R data frame. Converts dates to 'POSIX' format and manages throttling by 'Socrata'. Users can upload data to 'Socrata' portals directly from R.
Maintained by "Gene Leynes". Last updated 2 years ago.
chicagogovernmentopen-datasocratasoda
3.5 match 237 stars 7.87 score 864 scriptsropensci
targets:Dynamic Function-Oriented 'Make'-Like Declarative Pipelines
Pipeline tools coordinate the pieces of computationally demanding analysis projects. The 'targets' package is a 'Make'-like pipeline tool for statistics and data science in R. The package skips costly runtime for tasks that are already up to date, orchestrates the necessary computation with implicit parallel computing, and abstracts files as R objects. If all the current output matches the current upstream code and data, then the whole pipeline is up to date, and the results are more trustworthy than otherwise. The methodology in this package borrows from GNU 'Make' (2015, ISBN:978-9881443519) and 'drake' (2018, <doi:10.21105/joss.00550>).
Maintained by William Michael Landau. Last updated 2 days ago.
data-sciencehigh-performance-computingmakepeer-reviewedpipeliner-targetopiareproducibilityreproducible-researchtargetsworkflow
1.8 match 973 stars 15.20 score 4.6k scripts 22 dependents
sckott
httping:'Ping' 'URLs' to Time 'Requests'
A suite of functions to ping 'URLs' and to time 'HTTP' 'requests'. Designed to work with 'httr'.
Maintained by Scott Chamberlain. Last updated 2 years ago.
httphttp-clienthttp-requestshttping
7.3 match 10 stars 3.70 score 2 scripts
ixpantia
ixplorer:Easy DataOps for R Users
Create and view tickets in 'gitea', a self-hosted git service <https://about.gitea.com>, using an 'RStudio' addin, and use helper functions to publish documentation and use git.
Maintained by Frans van Dunne. Last updated 5 months ago.
4.5 match 2 stars 5.94 score 5 scripts
reichlab
zoltr:Interface to the 'Zoltar' Forecast Repository API
'Zoltar' <https://www.zoltardata.com/> is a website that provides a repository of model forecast results in a standardized format and a central location. It supports storing, retrieving, comparing, and analyzing time series forecasts for prediction challenges of interest to the modeling community. This package provides functions for working with the 'Zoltar' API, including connecting and authenticating, getting meta information (projects, models, and forecasts, and truth), and uploading, downloading, and deleting forecast and truth data.
Maintained by Matthew Cornell. Last updated 10 days ago.
3.5 match 2 stars 7.58 score 175 scripts 3 dependents
shikokuchuo
mirai:Minimalist Async Evaluation Framework for R
Designed for simplicity, a 'mirai' evaluates an R expression asynchronously in a parallel process, locally or distributed over the network. The result is automatically available upon completion. Modern networking and concurrency, built on 'nanonext' and 'NNG' (Nanomsg Next Gen), ensures reliable and efficient scheduling over fast inter-process communications or TCP/IP secured by TLS. Distributed computing can launch remote resources via SSH or cluster managers. An inherently queued architecture handles many more tasks than available processes, and requires no storage on the file system. Innovative features include support for otherwise non-exportable reference objects, event-driven promises, and asynchronous parallel map.
Maintained by Charlie Gao. Last updated 2 days ago.
asyncasynchronous-tasksconcurrencydistributed-computinghigh-performance-computingparallel-computing
2.3 match 217 stars 11.94 score 130 scripts 7 dependentscran
XML:Tools for Parsing and Generating XML Within R and S-Plus
Many approaches for both reading and creating XML (and HTML) documents (including DTDs), both local and accessible via HTTP or FTP. Also offers access to an 'XPath' "interpreter".
Maintained by CRAN Team. Last updated 2 months ago.
3.0 match 3 stars 8.87 score 1.3k dependents
jameshwade
gpttools:Extensions and Tools for gptstudio
gpttools is an R package that provides extensions to gptstudio to provide devtools-like functionality using the latest natural language processing (NLP) models. It is designed to make package development easier by providing a range of tools and functions that can be used to improve the quality of your package's documentation, testing, and maybe even functionality.
Maintained by James Wade. Last updated 7 months ago.
chatgptnlpopenaipackage-developmentrstudio-addin
3.8 match 293 stars 7.06 score 14 scripts
kadyb
rgugik:Search and Retrieve Spatial Data from 'GUGiK'
Automatic open data acquisition from resources of Polish Head Office of Geodesy and Cartography ('Główny Urząd Geodezji i Kartografii') (<https://www.gov.pl/web/gugik>). Available datasets include various types of numeric, raster and vector data, such as orthophotomaps, digital elevation models (digital terrain models, digital surface model, point clouds), state register of borders, spatial databases, geometries of cadastral parcels, 3D models of buildings, and more. It is also possible to geocode addresses or objects using the geocodePL_get() function.
Maintained by Krzysztof Dyba. Last updated 7 days ago.
cartographygeodesygisopen-datapoland
3.4 match 34 stars 7.69 score 30 scripts
piotrekjanus
aiRly:R Wrapper for 'Airly' API
Get information about air quality using 'Airly' <https://airly.eu/> API through R.
Maintained by Piotr Janus. Last updated 5 years ago.
9.7 match 2.70 score 2 scripts
mwaldstein
edgarWebR:SEC Filings Access
A set of methods to access and parse live filing information from the U.S. Securities and Exchange Commission (SEC - <https://www.sec.gov/>) including company and fund filings along with all associated metadata.
Maintained by Micah J Waldstein. Last updated 4 years ago.
4.0 match 78 stars 6.53 score 43 scripts
johndharrison
seleniumPipes:R Client Implementing the W3C WebDriver Specification
The W3C WebDriver specification defines a way for out-of-process programs to remotely instruct the behaviour of web browsers. It is detailed at <https://w3c.github.io/webdriver/webdriver-spec.html>. This package provides an R client implementing the W3C specification.
Maintained by John Harrison. Last updated 8 years ago.
3.9 match 54 stars 6.66 score 168 scripts
mrcieu
ieugwasr:Interface to the 'OpenGWAS' Database API
Interface to the 'OpenGWAS' database API <https://api.opengwas.io/api/>. Includes a wrapper to make generic calls to the API, plus convenience functions for specific queries.
Maintained by Gibran Hemani. Last updated 3 days ago.
2.4 match 89 stars 10.71 score 404 scripts 6 dependents
gmod
JBrowseR:An R Interface to the JBrowse 2 Genome Browser
Provides an R interface to the JBrowse 2 genome browser. Enables embedding a JB2 genome browser in a Shiny app or R Markdown document. The browser can also be launched from an interactive R console. The browser can be loaded with a variety of common genomics data types, and can be used with a custom theme.
Maintained by Colin Diesh. Last updated 1 years ago.
genomicsreactjsrmarkdownshinyvisualization
3.8 match 35 stars 6.81 score 31 scripts 1 dependents
asgr
imager:Image Processing Library Based on 'CImg'
Fast image processing for images in up to 4 dimensions (two spatial dimensions, one time/depth dimension, one colour dimension). Provides most traditional image processing tools (filtering, morphology, transformations, etc.) as well as various functions for easily analysing image data using R. The package wraps 'CImg', <http://cimg.eu>, a simple, modern C++ library for image processing.
Maintained by Aaron Robotham. Last updated 27 days ago.
1.9 match 17 stars 13.62 score 2.4k scripts 45 dependentsropensci
rentrez:'Entrez' in R
Provides an R interface to the NCBI's 'EUtils' API, allowing users to search databases like 'GenBank' <https://www.ncbi.nlm.nih.gov/genbank/> and 'PubMed' <https://pubmed.ncbi.nlm.nih.gov/>, process the results of those searches and pull data into their R sessions.
Maintained by David Winter. Last updated 4 years ago.
1.9 match 199 stars 13.60 score 784 scripts 95 dependents
petrbouchal
statnipokladna:Use Data from the Czech Public Finance Database
Get programmatic access to data from the Czech public budgeting and accounting database, Státní pokladna <https://monitor.statnipokladna.cz/>.
Maintained by Petr Bouchal. Last updated 7 months ago.
budgetingcitiesczech-republicgovernmentopen-datapublic-finance
3.9 match 7 stars 6.53 score 48 scriptsbioc
RCy3:Functions to Access and Control Cytoscape
Vizualize, analyze and explore networks using Cytoscape via R. Anything you can do using the graphical user interface of Cytoscape, you can now do with a single RCy3 function.
Maintained by Alex Pico. Last updated 5 months ago.
visualizationgraphandnetworkthirdpartyclientnetwork
1.9 match 52 stars 13.39 score 628 scripts 15 dependents
trafficonese
leaflet.extras:Extra Functionality for 'leaflet' Package
The 'leaflet' JavaScript library provides many plugins some of which are available in the core 'leaflet' package, but there are many more. It is not possible to support them all in the core 'leaflet' package. This package serves as an add-on to the 'leaflet' package by providing extra functionality via 'leaflet' plugins.
Maintained by Sebastian Gatscha. Last updated 2 months ago.
data-visualizationgeospatialleaflet
1.9 match 218 stars 13.27 score 2.5k scripts 25 dependentscran
datarobot:'DataRobot' Predictive Modeling API
For working with the 'DataRobot' predictive modeling platform's API <https://www.datarobot.com/>.
Maintained by AJ Alon. Last updated 1 years ago.
7.1 match 2 stars 3.48 scorewch
webshot:Take Screenshots of Web Pages
Takes screenshots of web pages, including Shiny applications and R Markdown documents.
Maintained by Winston Chang. Last updated 2 years ago.
2.0 match 230 stars 12.29 score 2.3k scripts 71 dependentsbioc
epivizrChart:R interface to epiviz web components
This package provides an API for interactive visualization of genomic data using epiviz web components. Objects in R/BioConductor can be used to generate interactive R markdown/notebook documents or can be visualized in the R Studio's default viewer.
Maintained by Hector Corrada Bravo. Last updated 5 months ago.
5.3 match 4.68 score 12 scriptspecanproject
PEcAn.utils:PEcAn Functions Used for Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PEcAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
Maintained by Rob Kooper. Last updated 2 days ago.
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
2.3 match 216 stars 10.92 score 218 scripts 35 dependentsrstudio
shinythemes:Themes for Shiny
Themes for use with Shiny. Includes several Bootstrap themes from <https://bootswatch.com/>, which are packaged for use with Shiny applications.
Maintained by Winston Chang. Last updated 3 years ago.
1.9 match 155 stars 13.06 score 8.5k scripts 124 dependents
melff
RKernel:Yet another R kernel for Jupyter
Provides a kernel for Jupyter.
Maintained by Martin Elff. Last updated 15 days ago.
jupyterjupyter-kerneljupyter-kernelsjupyter-notebook
5.3 match 38 stars 4.60 scorerstudio
keras3:R Interface to 'Keras'
Interface to 'Keras' <https://keras.io>, a high-level neural networks API. 'Keras' was developed with a focus on enabling fast experimentation, supports both convolution based networks and recurrent networks (as well as combinations of the two), and runs seamlessly on both CPU and GPU devices.
Maintained by Tomasz Kalinowski. Last updated 4 days ago.
1.8 match 845 stars 13.57 score 264 scripts 2 dependents
appsilon
shiny.semantic:Semantic UI Support for Shiny
Creating a great user interface for your Shiny apps can be a hassle, especially if you want to work purely in R and don't want to use, for instance HTML templates. This package adds support for a powerful UI library Fomantic UI - <https://fomantic-ui.com/> (before Semantic). It also supports universal UI input binding that works with various DOM elements.
Maintained by Jakub Nowicki. Last updated 11 months ago.
appsilonfomantic-uirhinoversesemanticsemantic-componentssemantic-uishiny
1.9 match 506 stars 13.00 score 586 scripts 3 dependents
vosonlab
VOSONDash:User Interface for Collecting and Analysing Social Networks
A 'Shiny' application for the interactive visualisation and analysis of networks that also provides a web interface for collecting social media data using 'vosonSML'.
Maintained by Bryan Gertzel. Last updated 2 years ago.
r-shinyrstudioshinysocial-network-analysisvoson
5.5 match 56 stars 4.45 score 6 scriptsbioc
CuratedAtlasQueryR:Queries the Human Cell Atlas
Provides access to a copy of the Human Cell Atlas, but with harmonised metadata. This allows for uniform querying across numerous datasets within the Atlas using common fields such as cell type, tissue type, and patient ethnicity. Usage involves first querying the metadata table for cells of interest, and then downloading the corresponding cells into a SingleCellExperiment object.
Maintained by Stefano Mangiola. Last updated 5 months ago.
assaydomaininfrastructurernaseqdifferentialexpressiongeneexpressionnormalizationclusteringqualitycontrolsequencingtranscriptiontranscriptomicsdatabaseduckdbhdf5human-cell-atlassingle-cellsinglecellexperimenttidyverse
3.5 match 90 stars 7.04 score 41 scriptsr-lib
gitcreds:Query 'git' Credentials from 'R'
Query, set, delete credentials from the 'git' credential store. Manage 'GitHub' tokens and other 'git' credentials. This package is to be used by other packages that need to authenticate to 'GitHub' and/or other 'git' repositories.
Maintained by Gábor Csárdi. Last updated 7 months ago.
credentialscredentials-helpergitgithub
1.8 match 28 stars 13.28 score 372 scripts 405 dependents
sstoeckl
crypto2:Download Crypto Currency Data from 'CoinMarketCap' without 'API'
Retrieves crypto currency information and historical prices as well as information on the exchanges they are listed on. Historical data contains daily open, high, low and close values for all crypto currencies. All data is scraped from <https://coinmarketcap.com> via their 'web-api'.
Maintained by Sebastian Stoeckl. Last updated 6 days ago.
3.2 match 56 stars 7.33 score 60 scripts 1 dependentsbioc
KEGGREST:Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)
A package that provides a client interface to the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST API. Only for academic use by academic users belonging to academic institutions (see <https://www.kegg.jp/kegg/rest/>). Note that KEGGREST is based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.
Maintained by Bioconductor Package Maintainer. Last updated 5 months ago.
annotationpathwaysthirdpartyclientkeggbioconductor-packagecore-package
1.6 match 9 stars 14.46 score 688 scripts 775 dependentscboettig
knitcitations:Citations for 'Knitr' Markdown Files
Provides the ability to create dynamic citations in which the bibliographic information is pulled from the web rather than having to be entered into a local database such as 'bibtex' ahead of time. The package is primarily aimed at authoring in the R 'markdown' format, and can provide outputs for web-based authoring such as linked text for inline citations. Cite using a 'DOI', URL, or 'bibtex' file key. See the package URL for details.
Maintained by Carl Boettiger. Last updated 4 years ago.
2.3 match 220 stars 10.21 score 836 scripts 2 dependents
jonthegeek
rapid:R 'API' Descriptions
Convert an 'API' description ('APID'), such as one that follows the 'OpenAPI Specification', to an R 'API' description object (a "rapid"). The rapid object follows the 'OpenAPI Specification' to make it easy to convert to and from 'API' documents.
Maintained by Jon Harmon. Last updated 3 months ago.
5.3 match 9 stars 4.28 score 10 scripts 2 dependents
trinker
textclean:Text Cleaning Tools
Tools to clean and process text. Tools are geared at checking for substrings that are not optimal for analysis and replacing or removing them (normalizing) with more analysis friendly substrings (see Sproat, Black, Chen, Kumar, Ostendorf, & Richards (2001) <doi:10.1006/csla.2001.0169>) or extracting them into new variables. For example, emoticons are often used in text but not always easily handled by analysis algorithms. The replace_emoticon() function replaces emoticons with word equivalents.
Maintained by Tyler Rinker. Last updated 3 years ago.
data-mungingemoticonsregextext-analysistext-cleaning
2.3 match 248 stars 10.08 score 760 scripts 22 dependentsvusaverse
vvcanvas:'Canvas' LMS API Integration
Allow R users to interact with the 'Canvas' Learning Management System (LMS) API (see <https://canvas.instructure.com/doc/api/all_resources.html> for details). It provides a set of functions to access and manipulate course data, assignments, grades, users, and other resources available through the 'Canvas' API.
Maintained by Tomer Iwan. Last updated 4 days ago.
canvascanvas-lmscanvas-lms-apicanvasapieducationalinstructure-canvas
3.6 match 7 stars 6.23 score 10 scriptsbioc
spatialHeatmap:spatialHeatmap: Visualizing Spatial Assays in Anatomical Images and Large-Scale Data Extensions
The spatialHeatmap package offers the primary functionality for visualizing cell-, tissue- and organ-specific assay data in spatial anatomical images. Additionally, it provides extended functionalities for large-scale data mining routines and co-visualizing bulk and single-cell data. A description of the project is available here: https://spatialheatmap.org.
Maintained by Jianhai Zhang. Last updated 4 months ago.
spatialvisualizationmicroarraysequencinggeneexpressiondatarepresentationnetworkclusteringgraphandnetworkcellbasedassaysatacseqdnaseqtissuemicroarraysinglecellcellbiologygenetarget
3.6 match 5 stars 6.26 score 12 scriptsices-tools-prod
icesVocab:ICES Vocabularies Database Web Services
R interface to access the Vocabularies REST API of the ICES (International Council for the Exploration of the Sea) Vocabularies database <https://vocab.ices.dk/services/>.
Maintained by Colin Millar. Last updated 1 months ago.
4.0 match 6 stars 5.55 score 78 scripts 5 dependentsrstudio
webshot2:Take Screenshots of Web Pages
Takes screenshots of web pages, including Shiny applications and R Markdown documents. 'webshot2' uses headless Chrome or Chromium as the browser back-end.
Maintained by Winston Chang. Last updated 1 months ago.
2.0 match 114 stars 11.20 score 928 scripts 17 dependentsbioc
ontoProc:processing of ontologies of anatomy, cell lines, and so on
Support harvesting of diverse bioinformatic ontologies, making particular use of the ontologyIndex package on CRAN. We provide snapshots of key ontologies for terms about cells, cell lines, chemical compounds, and anatomy, to help analyze genome-scale experiments, particularly cell x compound screens. Another purpose is to strengthen development of compelling use cases for richer interfaces to emerging ontologies.
Maintained by Vincent Carey. Last updated 3 days ago.
infrastructuregobioinformaticsgenomicsontology
3.5 match 3 stars 6.37 score 75 scripts 2 dependentsshikokuchuo
nanonext:NNG (Nanomsg Next Gen) Lightweight Messaging Library
R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ. NNG is a socket library for reliable, high-performance messaging over in-process, IPC, TCP, WebSocket and secure TLS transports. Implements 'Scalability Protocols', a standard for common communications patterns including publish/subscribe, request/reply and service discovery. As its own threaded concurrency framework, provides a toolkit for asynchronous programming and distributed computing. Intuitive 'aio' objects resolve automatically when asynchronous operations complete, and synchronisation primitives allow R to wait upon events signalled by concurrent threads.
Maintained by Charlie Gao. Last updated 2 days ago.
concurrencyhttpsipc-messagemessaging-librarynngrpcsocket-communicationsynchronization-primitivestcp-protocolwebsocketmbedtls
2.3 match 60 stars 9.81 score 28 scripts 9 dependentsbioc
conumee:Enhanced copy-number variation analysis using Illumina DNA methylation arrays
This package contains a set of processing and plotting methods for performing copy-number variation (CNV) analysis using Illumina 450k or EPIC methylation arrays.
Maintained by Volker Hovestadt. Last updated 5 months ago.
copynumbervariationdnamethylationmethylationarraymicroarraynormalizationpreprocessingqualitycontrolsoftware
4.0 match 5.48 score 30 scripts
ivan-rivera
RedditExtractoR:Reddit Data Extraction Toolkit
A collection of tools for extracting structured data from <https://www.reddit.com/>.
Maintained by Ivan Rivera. Last updated 2 years ago.
3.7 match 92 stars 5.93 score 153 scripts
pkrog
sched:Request Scheduler
Offers classes and functions to contact web servers while enforcing scheduling rules required by the sites. The URL class makes it easy to construct a URL by providing parameters as a vector. The Request class allows to describes SOAP (Simple Object Access Protocol) or standard requests: URL, method (POST or GET), header, body. The Scheduler class controls the request frequency for each server address by mean of rules (Rule class). The RequestResult class permits to get the request status to handle error cases and the content.
Maintained by Pierrick Roger. Last updated 6 months ago.
7.8 match 2.78 score 2 scripts
jdblischak
faviconPlease:Find the URL to the 'Favicon' for a Website
Finds the URL to the 'favicon' for a website. This is useful if you want to display the 'favicon' in an HTML document or web application, especially if the website is behind a firewall.
Maintained by John Blischak. Last updated 4 months ago.
5.5 match 8 stars 3.90 score 3 scripts
calcita
ech:Downloading and Processing Microdata from ECH-INE (Uruguay)
A consistent tool for downloading ECH data, processing them and generating new indicators: poverty, education, employment, etc. All data are downloaded from the official site of the National Institute of Statistics at <https://www.gub.uy/instituto-nacional-estadistica/datos-y-estadisticas/encuestas/encuesta-continua-hogares>.
Maintained by Gabriela Mathieu. Last updated 1 years ago.
3.5 match 16 stars 6.15 score 22 scripts
canmod
iidda:Processing Infectious Disease Datasets in IIDDA.
Part of an open toolchain for processing infectious disease datasets available through the IIDDA data repository.
Maintained by Steve Walker. Last updated 4 months ago.
3.5 match 6.07 score 133 scripts 3 dependents
giobo
TR8:A Tool for Downloading Functional Traits Data for Plant Species
Plant ecologists often need to collect "traits" data about plant species which are often scattered among various databases: TR8 contains a set of tools which take care of automatically retrieving some of those functional traits data for plant species from publicly available databases (The Ecological Flora of the British Isles, LEDA traitbase, Ellenberg values for Italian Flora, Mycorrhizal intensity databases, BROT, PLANTS, Jepson Flora Project). The TR8 name, inspired by "car plates" jokes, was chosen since it both reminds of the main object of the package and is extremely short to type.
Maintained by Gionata Bocci. Last updated 6 months ago.
3.4 match 20 stars 6.16 score 16 scriptsr-lib
rcmdcheck:Run 'R CMD check' from 'R' and Capture Results
Run 'R CMD check' from 'R' and capture the results of the individual checks. Supports running checks in the background, timeouts, pretty printing and comparing check results.
Maintained by Gábor Csárdi. Last updated 5 months ago.
1.7 match 116 stars 12.34 score 102 scripts 158 dependents
ewenme
geniusr:Tools for Working with the 'Genius' API
Provides tools to interact nicely with the 'Genius' API <https://docs.genius.com/>. Search hosted content, extract associated metadata and retrieve lyrics with ease.
Maintained by Ewen Henderson. Last updated 3 years ago.
3.5 match 50 stars 6.02 score 104 scripts
taikisan21
PAMmisc:Miscellaneous Functions for Passive Acoustic Analysis
A collection of miscellaneous functions for passive acoustics. Much of the content here is adapted to R from code written by other people. If you have any ideas of functions to add, please contact Taiki Sakai.
Maintained by Taiki Sakai. Last updated 23 days ago.
3.5 match 4 stars 5.88 score 42 scripts 2 dependentsnflverse
nflreadr:Download 'nflverse' Data
A minimal package for downloading data from 'GitHub' repositories of the 'nflverse' project.
Maintained by Tan Ho. Last updated 4 months ago.
nflnflfastrnflversesports-data
1.7 match 66 stars 12.46 score 476 scripts 10 dependentsbioc
ReportingTools:Tools for making reports in various formats
The ReportingTools software package enables users to easily display reports of analysis results generated from sources such as microarray and sequencing data. The package allows users to create HTML pages that may be viewed on a web browser such as Safari, or in other formats readable by programs such as Excel. Users can generate tables with sortable and filterable columns, make and display plots, and link table entries to other data sources such as NCBI or larger plots within the HTML page. Using the package, users can also produce a table of contents page to link various reports together for a particular project that can be viewed in a web browser. For more examples, please visit our site: http:// research-pub.gene.com/ReportingTools.
Maintained by Jason A. Hackney. Last updated 5 months ago.
immunooncologysoftwarevisualizationmicroarrayrnaseqgodatarepresentationgenesetenrichment
3.3 match 6.23 score 93 scripts 1 dependents
thiyangt
denguedatahub:A Tidy Format Datasets of Dengue by Country
Provides a weekly, monthly, yearly summary of dengue cases by state/ province/ country.
Maintained by Thiyanga S. Talagala. Last updated 1 months ago.
4.0 match 11 stars 5.12 score 34 scripts
giscience
ohsome:An 'ohsome API' Client
A client that grants access to the power of the 'ohsome API' from R. It lets you analyze the rich data source of the 'OpenStreetMap (OSM)' history. You can retrieve the geometry of 'OSM' data at specific points in time, and you can get aggregated statistics on the evolution of 'OSM' elements and specify your own temporal, spatial and/or thematic filters.
Maintained by Oliver Fritz. Last updated 2 years ago.
heigitohsomeopenstreetmapopenstreetmap-dataopenstreetmap-historyosmosm-data
4.0 match 11 stars 5.04 score 9 scripts
pedropark99
figma:Web Client/Wrapper to the 'Figma API'
An easy-to-use web client/wrapper for the 'Figma API' <https://www.figma.com/developers/api>. It allows you to bring all data from a 'Figma' file to your 'R' session. This includes the data of all objects that you have drawn in this file, and their respective canvas/page metadata.
Maintained by Pedro Faria. Last updated 2 years ago.
3.8 match 4 stars 5.30 score 33 scriptsjonthegeek
nectar:A Framework for Web API Packages
An opinionated framework for use within api-wrapping R packages.
Maintained by Jon Harmon. Last updated 1 months ago.
4.1 match 15 stars 4.86 score 1 scripts 4 dependents
predictiveecology
SpaDES.core:Core Utilities for Developing and Running Spatially Explicit Discrete Event Models
Provides the core framework for a discrete event system to implement a complete data-to-decisions, reproducible workflow. The core components facilitate the development of modular pieces, and enable the user to include additional functionality by running user-built modules. Includes conditional scheduling, restart after interruption, packaging of reusable modules, tools for developing arbitrary automated workflows, automated interweaving of modules of different temporal resolution, and tools for visualizing and understanding the within-project dependencies. The suggested package 'NLMR' can be installed from the repository (<https://PredictiveEcology.r-universe.dev>).
Maintained by Eliot J B McIntire. Last updated 19 days ago.
discrete-events-simulationssimulation-frameworksimulation-modeling
1.9 match 10 stars 10.61 score 142 scripts 6 dependents
laresbernardo
lares:Analytics & Machine Learning Sidekick
Auxiliary package for better/faster analytics, visualization, data mining, and machine learning tasks. With a wide variety of family functions, like Machine Learning, Data Wrangling, Marketing Mix Modeling (Robyn), Exploratory, API, and Scrapper, it helps the analyst or data scientist to get quick and robust results, without the need of repetitive coding or advanced R programming skills.
Maintained by Bernardo Lares. Last updated 24 days ago.
analyticsapiautomationautomldata-sciencedescriptive-statisticsh2omachine-learningmarketingmmmpredictive-modelingpuzzlerlanguagerobynvisualization
2.0 match 233 stars 9.84 score 185 scripts 1 dependents
ptaconet
modisfast:Fast and Efficient Access to MODIS Earth Observation Data
Programmatic interface to several NASA Earth Observation 'OPeNDAP' servers (Open-source Project for a Network Data Access Protocol) (<https://www.opendap.org/>). Allows for easy downloads of MODIS subsets, as well as other Earth Observation datacubes, in a time-saving and efficient way : by sampling it at the very downloading phase (spatially, temporally and dimensionally).
Maintained by Paul Taconet. Last updated 5 days ago.
data-cubeearth-science-dataenvironmental-datagpmlandmodisnasaopendapprecipitation-datatemperature-datavegetation-dataviirs
3.5 match 29 stars 5.60 score 13 scripts
soodoku
aws.alexa:Client for the Amazon Alexa Web Information Services API
Use the Amazon Alexa Web Information Services API to find information about domains, including the kind of content that they carry, how popular are they---rank and traffic history, sites linking to them, among other things. See <https://aws.amazon.com/awis/> for more information.
Maintained by Gaurav Sood. Last updated 4 years ago.
5.4 match 3.65 score 9 scripts 1 dependents
t-kalinowski
keras:R Interface to 'Keras'
Interface to 'Keras' <https://keras.io>, a high-level neural networks 'API'. 'Keras' was developed with a focus on enabling fast experimentation, supports both convolution based networks and recurrent networks (as well as combinations of the two), and runs seamlessly on both 'CPU' and 'GPU' devices.
Maintained by Tomasz Kalinowski. Last updated 11 months ago.
1.8 match 10.82 score 10k scripts 54 dependentsbioc
SCANVIS:SCANVIS - a tool for SCoring, ANnotating and VISualizing splice junctions
SCANVIS is a set of annotation-dependent tools for analyzing splice junctions and their read support as predetermined by an alignment tool of choice (for example, STAR aligner). SCANVIS assesses each junction's relative read support (RRS) by relating to the context of local split reads aligning to annotated transcripts. SCANVIS also annotates each splice junction by indicating whether the junction is supported by annotation or not, and if not, what type of junction it is (e.g. exon skipping, alternative 5' or 3' events, Novel Exons). Unannotated junctions are also futher annotated by indicating whether it induces a frame shift or not. SCANVIS includes a visualization function to generate static sashimi-style plots depicting relative read support and number of split reads using arc thickness and arc heights, making it easy for users to spot well-supported junctions. These plots also clearly delineate unannotated junctions from annotated ones using designated color schemes, and users can also highlight splice junctions of choice. Variants and/or a read profile are also incoroporated into the plot if the user supplies variants in bed format and/or the BAM file. One further feature of the visualization function is that users can submit multiple samples of a certain disease or cohort to generate a single plot - this occurs via a "merge" function wherein junction details over multiple samples are merged to generate a single sashimi plot, which is useful when contrasting cohorots (eg. disease vs control).
Maintained by Phaedra Agius. Last updated 5 months ago.
softwareresearchfieldtranscriptomicsworkflowstepannotationvisualization
4.9 match 4.00 score 2 scriptscloudyr
googleComputeEngineR:R Interface with Google Compute Engine
Interact with the 'Google Compute Engine' API in R. Lets you create, start and stop instances in the 'Google Cloud'. Support for preconfigured instances, with templates for common R needs.
Maintained by Mark Edmondson. Last updated 1 days ago.
apicloud-computingcloudyrgoogle-cloudgoogleauthrlaunching-virtual-machines
2.0 match 152 stars 9.73 score 235 scripts
symbolixau
googleway:Accesses Google Maps APIs to Retrieve Data and Plot Maps
Provides a mechanism to plot a 'Google Map' from 'R' and overlay it with shapes and markers. Also provides access to 'Google Maps' APIs, including places, directions, roads, distances, geocoding, elevation and timezone.
Maintained by David Cooley. Last updated 6 months ago.
google-mapgoogle-mapsgoogle-maps-apigoogle-maps-javascript-apispatialspatial-analysis
2.0 match 236 stars 9.67 score 536 scripts 2 dependentsappsilon
shiny.router:Basic Routing for Shiny Web Applications
It is a simple router for your Shiny apps. The router allows you to create dynamic web applications with real-time User Interface and easily share url to pages within your Shiny apps.
Maintained by Ryszard Szymański. Last updated 11 months ago.
2.3 match 257 stars 8.50 score 165 scripts
jpquast
protti:Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools
Useful functions and workflows for proteomics quality control and data analysis of both limited proteolysis-coupled mass spectrometry (LiP-MS) (Feng et. al. (2014) <doi:10.1038/nbt.2999>) and regular bottom-up proteomics experiments. Data generated with search tools such as 'Spectronaut', 'MaxQuant' and 'Proteome Discover' can be easily used due to flexibility of functions.
Maintained by Jan-Philipp Quast. Last updated 5 months ago.
data-analysislip-msmass-spectrometryomicsproteinproteomicssystems-biology
2.3 match 61 stars 8.58 score 83 scripts
fastgitorg
fgitR:Using 'FastGit' to Accelerate the Access to 'GitHub'
'FastGit' <https://doc.fastgit.org/> works like a mirror of 'GitHub' to make significant acceleration. 'fgitR' is a package to do git operation with 'FastGit' automatically.
Maintained by Han Chen. Last updated 3 years ago.
5.5 match 6 stars 3.48 score 4 scripts
ms-quality-hub
rmzqc:Creation, Reading and Validation of 'mzqc' Files
Reads, writes and validates 'mzQC' files. The 'mzQC' format is a standardized file format for the exchange, transmission, and archiving of quality metrics derived from biological mass spectrometry data, as defined by the HUPO-PSI (Human Proteome Organisation - Proteomics Standards Initiative) Quality Control working group. See <https://hupo-psi.github.io/mzQC/> for details.
Maintained by Chris Bielow. Last updated 11 months ago.
hacktoberfestmass-spectrometrymzqcquality-control
3.4 match 2 stars 5.73 score 10 scripts 3 dependentsbioc
MouseFM:In-silico methods for genetic finemapping in inbred mice
This package provides methods for genetic finemapping in inbred mice by taking advantage of their very high homozygosity rate (>95%).
Maintained by Matthias Munz. Last updated 5 months ago.
geneticssnpgenetargetvariantannotationgenomicvariationmultiplecomparisonsystemsbiologymathematicalbiologypatternlogicgenepredictionbiomedicalinformaticsfunctionalgenomicsfinemapgene-candidatesinbred-miceinbred-strainsmouseqtlqtl-mapping
3.8 match 5.13 score 5 scripts
geoffjentry
twitteR:R Based Twitter Client
Provides an interface to the Twitter web API.
Maintained by Jeff Gentry. Last updated 9 years ago.
1.9 match 254 stars 10.18 score 2.0k scripts 1 dependents
swissclinicaltrialorganisation
secuTrialR:Handling of Data from the Clinical Data Management System 'secuTrial'
Seamless and standardized interaction with data exported from the clinical data management system (CDMS) 'secuTrial'<https://www.secutrial.com>. The primary data export the package works with is a standard non-rectangular export.
Maintained by Alan G. Haynes. Last updated 10 months ago.
3.3 match 8 stars 5.86 score 15 scripts
ncss-tech
soilDB:Soil Database Interface
A collection of functions for reading soil data from U.S. Department of Agriculture Natural Resources Conservation Service (USDA-NRCS) and National Cooperative Soil Survey (NCSS) databases.
Maintained by Andrew Brown. Last updated 7 days ago.
ksslnasisnrcssoilsoil-data-accesssoil-surveysoilwebsqlusda
1.7 match 87 stars 11.34 score 1.0k scripts 1 dependents