R-universe search: palette

emilhvitfeldt

paletteer:Comprehensive Collection of Color Palettes

The choices of color palettes in R can be quite overwhelming with palettes spread over many packages with many different API's. This packages aims to collect all color palettes across the R ecosystem under the same package with a streamlined API.

Maintained by Emil Hvitfeldt. Last updated 9 months ago.

color-palette palettes

97.6 match 957 stars 13.50 score 6.9k scripts 23 dependents

nanxstats

ggsci:Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'

A collection of 'ggplot2' color palettes inspired by plots in scientific journals, data visualization libraries, science fiction movies, and TV shows.

Maintained by Nan Xiao. Last updated 9 months ago.

color-palettes data-visualization ggplot2 ggsci sci-fi scientific-journals visualization

72.3 match 680 stars 18.00 score 26k scripts 438 dependents

mccarthy-m-g

palettes:Methods for Colour Vectors and Colour Palettes

Provides a comprehensive library for colour vectors and colour palettes using a new family of colour classes (palettes_colour and palettes_palette) that always print as hex codes with colour previews. Capabilities include: formatting, casting and coercion, extraction and updating of components, plotting, colour mixing arithmetic, and colour interpolation.

Maintained by Michael McCarthy. Last updated 6 months ago.

color-palette colors colour-palette colours ggplot2 gt palettes vctrs

149.4 match 25 stars 7.58 score 42 scripts 1 dependents

jrnold

ggthemes:Extra Themes, Scales and Geoms for 'ggplot2'

Some extra themes, geoms, and scales for 'ggplot2'. Provides 'ggplot2' themes and scales that replicate the look of plots by Edward Tufte, Stephen Few, 'Fivethirtyeight', 'The Economist', 'Stata', 'Excel', and 'The Wall Street Journal', among others. Provides 'geoms' for Tufte's box plot and range frame.

Maintained by Jeffrey B. Arnold. Last updated 1 years ago.

data-visualisation ggplot2 ggplot2-themes plot plotting theme visualization

60.8 match 1.3k stars 16.17 score 40k scripts 102 dependents

frareb

palettesForR:GPL Palettes Copied from 'Gimp' and 'Inkscape'

A set of palettes imported from 'Gimp' distributed under GPL3 (<https://www.gimp.org/about/COPYING>), and 'Inkscape' distributed under GPL2 (<https://inkscape.org/about/license/>).

Maintained by Francois Rebaudo. Last updated 6 years ago.

224.3 match 2 stars 3.00 score 5 scripts

hneth

unikn:Graphical Elements of the University of Konstanz's Corporate Design

Define and use graphical elements of corporate design manuals in R. The 'unikn' package provides color functions (by defining dedicated colors and color palettes, and commands for finding, changing, viewing, and using them) and styled text elements (e.g., for marking, underlining, or plotting colored titles). The pre-defined range of colors and text decoration functions is based on the corporate design of the University of Konstanz <https://www.uni-konstanz.de/>, but can be adapted and extended for other purposes or institutions.

Maintained by Hansjoerg Neth. Last updated 3 months ago.

branding color color-palette colorscheme corporate-design palette text-decoration university-colors visual-identity

72.3 match 39 stars 8.82 score 156 scripts 2 dependents

r-lib

scales:Scale Functions for Visualization

Graphical scales map data to aesthetics, and provide methods for automatically determining breaks and labels for axes and legends.

Maintained by Thomas Lin Pedersen. Last updated 5 months ago.

ggplot2

30.0 match 419 stars 19.88 score 88k scripts 7.9k dependents

katilingban

paleta:Collection of Palettes, Themes, and Theme Components

A collection of palettes, themes, and theme components based on publicly available branding guidelines of various non-governmental organisations, government agencies, and United Nations units.

Maintained by Ernest Guevarra. Last updated 2 months ago.

102.3 match 2 stars 4.48 score 8 scripts

easystats

see:Model Visualisation Toolbox for 'easystats' and 'ggplot2'

Provides plotting utilities supporting packages in the 'easystats' ecosystem (<https://github.com/easystats/easystats>) and some extra themes, geoms, and scales for 'ggplot2'. Color scales are based on <https://materialui.co/>. References: Lüdecke et al. (2021) <doi:10.21105/joss.03393>.

Maintained by Indrajeet Patil. Last updated 5 days ago.

data-visualization easystats ggplot2 hacktoberfest plotting see statistics visualisation visualization

34.4 match 902 stars 13.22 score 2.0k scripts 3 dependents

r-forge

Polychrome:Qualitative Palettes with Many Colors

Tools for creating, viewing, and assessing qualitative palettes with many (20-30 or more) colors. See Coombes and colleagues (2019) <doi:10.18637/jss.v090.c01>.

Maintained by Kevin R. Coombes. Last updated 1 months ago.

46.8 match 9.56 score 1.0k scripts 27 dependents

r-forge

colorspace:A Toolbox for Manipulating and Assessing Colors and Palettes

Carries out mapping between assorted color spaces including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB, and polar CIELAB. Qualitative, sequential, and diverging color palettes based on HCL colors are provided along with corresponding ggplot2 color scales. Color palette choice is aided by an interactive app (with either a Tcl/Tk or a shiny graphical user interface) and shiny apps with an HCL color picker and a color vision deficiency emulator. Plotting functions for displaying and assessing palettes include color swatches, visualizations of the HCL space, and trajectories in HCL and/or RGB spectrum. Color manipulation functions include: desaturation, lightening/darkening, mixing, and simulation of color vision deficiencies (deutanomaly, protanomaly, tritanomaly). Details can be found on the project web page at <https://colorspace.R-Forge.R-project.org/> and in the accompanying scientific paper: Zeileis et al. (2020, Journal of Statistical Software, <doi:10.18637/jss.v096.i01>).

Maintained by Achim Zeileis. Last updated 4 months ago.

26.5 match 16.23 score 8.2k scripts 8.1k dependents

nrennie

PrettyCols:Pretty Colour Palettes

Defines aesthetically pleasing colour palettes.

Maintained by Nicola Rennie. Last updated 3 months ago.

44.7 match 52 stars 9.20 score 121 scripts 2 dependents

kwstat

pals:Color Palettes, Colormaps, and Tools to Evaluate Them

A comprehensive collection of color palettes, colormaps, and tools to evaluate them. See Kovesi (2015) <doi:10.48550/arXiv.1509.03700>.

Maintained by Kevin Wright. Last updated 9 days ago.

33.5 match 83 stars 11.39 score 2.1k scripts 8 dependents

christopherkenny

palette:Color Scheme Helpers

Hexadecimal codes are typically used to represent colors in R. Connecting these codes to their colors requires practice or memorization. 'palette' provides a 'vctrs' class for working with color palettes, including printing and plotting functions. The goal of the class is to place visual representations of color palettes directly on or, at least, next to their corresponding character representations. Palette extensions also are provided for data frames using 'pillar'.

Maintained by Christopher T. Kenny. Last updated 9 months ago.

72.6 match 5 stars 5.21 score 18 scripts 3 dependents

gtatters

Thermimage:Thermal Image Analysis

A collection of functions and routines for inputting thermal image video files, plotting and converting binary raw data into estimates of temperature. First published 2015-03-26. Written primarily for research purposes in biological applications of thermal images. v1 included the base calculations for converting thermal image binary values to temperatures. v2 included additional equations for providing heat transfer calculations and an import function for thermal image files (v2.2.3 fixed error importing thermal image to windows OS). v3. Added numerous functions for converting thermal image, videos, rewriting and exporting. v3.1. Added new functions to convert files. v3.2. Fixed the various functions related to finding frame times. v4.0. fixed an error in atmospheric attenuation constants, affecting raw2temp and temp2raw functions. Recommend update for use with long distance calculations. v.4.1.3. changed to frameLocates to reflect change to as.character() to format().

Maintained by Glenn J. Tattersall. Last updated 3 years ago.

animal-physiology heat-exchange heat-flux image-frames temperature thermal-biology thermal-images

58.7 match 169 stars 5.85 score 83 scripts

andrisignorell

DescTools:Tools for Descriptive Statistics

A collection of miscellaneous basic statistic functions and convenience wrappers for efficiently describing data. The author's intention was to create a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. The package contains furthermore functions to produce documents using MS Word (or PowerPoint) and functions to import data from Excel. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in absence of convincing alternatives). The 'BigCamelCase' style was consequently applied to functions borrowed from contributed R packages as well.

Maintained by Andri Signorell. Last updated 9 hours ago.

fortran cpp

18.0 match 87 stars 16.70 score 7.7k scripts 99 dependents

karthik

wesanderson:A Wes Anderson Palette Generator

Palettes generated mostly from 'Wes Anderson' movies.

Maintained by Karthik Ram. Last updated 1 years ago.

color-palette data-visualization plot wes-anderson-palettes

21.8 match 2.0k stars 13.44 score 7.1k scripts 23 dependents

ryo-n7

tvthemes:TV Show Themes and Color Palettes for 'ggplot2' Graphics

Contains various 'ggplot2' themes and color palettes based on TV shows such as 'Game of Thrones', 'Brooklyn Nine-Nine', 'Avatar: The Last Airbender', 'Spongebob Squarepants', and more.

Maintained by Ryo Nakagawara. Last updated 1 years ago.

color-scheme data-viz ggplot2 ggplot2-themes palette-colors tv-series tv-shows

36.5 match 140 stars 7.34 score 103 scripts

hrbrmstr

hrbrthemes:Additional Themes, Theme Components and Utilities for 'ggplot2'

A compilation of extra 'ggplot2' themes, scales and utilities, including a spell check function for plot label fields and an overall emphasis on typography. A copy of the 'Google' font 'Roboto Condensed' is also included.

Maintained by Bob Rudis. Last updated 2 days ago.

data-visualization datavisualization ggplot-extension ggplot2 ggplot2-scales ggplot2-themes visualization

16.7 match 1.3k stars 13.92 score 13k scripts 15 dependents

johnmackintosh

rockthemes:Colour palettes based on classic rock album covers

Colour palettes, scales and fills based on classic rock album covers.

Maintained by John MacKintosh. Last updated 1 years ago.

colour-palettes data-visualisation data-visualization ggplot2 ggplot2-themes rock-albums

55.4 match 35 stars 4.02 score 7 scripts

tylerlittlefield

lisa:Color Palettes from Color Lisa

Contains 128 palettes from Color Lisa. All palettes are based on masterpieces from the worlds greatest artists. For more information, see <http://colorlisa.com/>.

Maintained by Tyler Littlefield. Last updated 4 years ago.

color-palette colorlisa data-visualization palettes

34.4 match 45 stars 5.84 score 31 scripts

igraph

igraph:Network Analysis and Visualization

Routines for simple graphs and network analysis. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.

Maintained by Kirill Müller. Last updated 13 hours ago.

complex-networks graph-algorithms graph-theory mathematics network-analysis network-graph fortran libxml2 glpk openblas cpp

8.8 match 582 stars 21.11 score 31k scripts 1.9k dependents

wjakethompson

taylor:Lyrics and Song Data for Taylor Swift's Discography

A comprehensive resource for data on Taylor Swift songs. Data is included for all officially released studio albums, extended plays (EPs), and individual singles are included. Data comes from 'Genius' (lyrics) and 'Spotify' (song characteristics). Additional functions are included for easily creating data visualizations with color palettes inspired by Taylor Swift's album covers.

Maintained by W. Jake Thompson. Last updated 1 months ago.

color-palettes data genius-lyrics ggplot2-themes lyrics spotify spotify-api taylor-swift

20.7 match 45 stars 8.79 score 105 scripts

thomasp85

scico:Colour Palettes Based on the Scientific Colour-Maps

Colour choice in information visualisation is important in order to avoid being mislead by inherent bias in the used colour palette. The 'scico' package provides access to the perceptually uniform and colour-blindness friendly palettes developed by Fabio Crameri and released under the "Scientific Colour-Maps" moniker. The package contains 24 different palettes and includes both diverging and sequential types.

Maintained by Thomas Lin Pedersen. Last updated 2 years ago.

color-palette visualization

16.8 match 444 stars 10.80 score 2.0k scripts 7 dependents

jmaasch

sanzo:Color Palettes Based on the Works of Sanzo Wada

Inspired by the art and color research of Sanzo Wada (1883-1967), his "Dictionary Of Color Combinations" (2011, ISBN:978-4861522475), and the interactive site by Dain M. Blodorn Kim <https://github.com/dblodorn/sanzo-wada>, this package brings Wada's color combinations to R for easy use in data visualizations. This package honors 60 of Wada's color combinations: 20 duos, 20 trios, and 20 quads.

Maintained by Jacqueline Maasch. Last updated 5 years ago.

color-palettes data-analysis data-science data-visualization sanzo-wada visualizations

33.4 match 30 stars 5.41 score 17 scripts

cols4all

cols4all:Colors for all

Color palettes for all people, including those with color vision deficiency. Popular color palette series have been organized by type and have been scored on several properties such as color-blind-friendliness and fairness (i.e. do colors stand out equally?). Own palettes can also be loaded and analysed. Besides the common palette types (categorical, sequential, and diverging) it also includes cyclic and bivariate color palettes. Furthermore, a color for missing values is assigned to each palette.

Maintained by Martijn Tennekes. Last updated 2 months ago.

18.1 match 343 stars 9.98 score 26 dependents

ewenme

ghibli:Studio Ghibli Colour Palettes

Colour palettes inspired by Studio Ghibli <https://en.wikipedia.org/wiki/Studio_Ghibli> films, ported to R for your enjoyment.

Maintained by Ewen Henderson. Last updated 12 months ago.

ggplot2 ghibli palette visualization

21.1 match 427 stars 8.44 score 324 scripts

cararthompson

monochromeR:Easily Create, View and Use Monochrome Colour Palettes

Generate a monochrome palette from a starting colour for a specified number of colours. The package can also be used to display colour palettes in the plot window, with or without hex codes and colour labels.

Maintained by Cara Thompson. Last updated 2 years ago.

color-palette dataviz ggplot2 palette palette-generation

32.5 match 80 stars 5.31 score 51 scripts

gvelasq

palettizer:R Package for Color Palette Generation Using the 'palettize' C++ Library

R package for color palette generation using the 'palettize' C++ library.

Maintained by Gustavo Velásquez. Last updated 2 years ago.

cpp palette-generation cpp

65.0 match 3 stars 2.48 score

hneth

unicol:The Colors of your University

Most universities use specific color combinations to express their unique brand identity. The 'unicol' package provides the colors and color palettes of various universities for easy plotting and printing in R. We collect and provide a diverse range of color palettes for creating scientific visualizations.

Maintained by Hansjoerg Neth. Last updated 7 months ago.

branding color color-palettes color-schemes corporate-design university-colors visual-identity

24.0 match 9 stars 6.58 score 10 scripts

csdaw

ggprism:A 'ggplot2' Extension Inspired by 'GraphPad Prism'

Provides various themes, palettes, and other functions that are used to customise ggplots to look like they were made in 'GraphPad Prism'. The 'Prism'-look is achieved with theme_prism() and scale_fill|colour_prism(), axes can be changed with custom guides like guide_prism_minor(), and significance indicators added with add_pvalue().

Maintained by Charlotte Dawson. Last updated 12 months ago.

ggplot-extension ggplot2 prism

14.9 match 175 stars 10.56 score 1.1k scripts 5 dependents

nowosad

rcartocolor:'CARTOColors' Palettes

Provides color schemes for maps and other graphics designed by 'CARTO' as described at <https://carto.com/carto-colors/>. It includes four types of palettes: aggregation, diverging, qualitative, and quantitative.

Maintained by Jakub Nowosad. Last updated 5 months ago.

color-palette ggplot2 visualization

18.0 match 111 stars 8.64 score 1.4k scripts 1 dependents

chris-prener

biscale:Tools and Palettes for Bivariate Thematic Mapping

Provides a 'ggplot2' centric approach to bivariate mapping. This is a technique that maps two quantities simultaneously rather than the single value that most thematic maps display. The package provides a suite of tools for calculating breaks using multiple different approaches, a selection of palettes appropriate for bivariate mapping and scale functions for 'ggplot2' calls that adds those palettes to maps. Tools for creating bivariate legends are also included.

Maintained by Christopher Prener. Last updated 3 years ago.

18.2 match 122 stars 8.53 score 466 scripts

ropensci

canaper:Categorical Analysis of Neo- And Paleo-Endemism

Provides functions to analyze the spatial distribution of biodiversity, in particular categorical analysis of neo- and paleo-endemism (CANAPE) as described in Mishler et al (2014) <doi:10.1038/ncomms5473>. 'canaper' conducts statistical tests to determine the types of endemism that occur in a study area while accounting for the evolutionary relationships of species.

Maintained by Joel H. Nitta. Last updated 2 years ago.

biodiversity canape

28.9 match 7 stars 5.38 score 23 scripts

lter

lterpalettefinder:Extract Color Palettes from Photos and Pick Official LTER Palettes

Allows identification of palettes derived from LTER (Long Term Ecological Research) photographs based on user criteria. Also facilitates extraction of palettes from users' photos directly.

Maintained by Nicholas J Lyon. Last updated 2 years ago.

color-palette-generator data-science

28.5 match 27 stars 5.43 score 7 scripts

jaredhuling

jcolors:Colors Palettes for R and 'ggplot2', Additional Themes for 'ggplot2'

Contains a selection of color palettes and 'ggplot2' themes designed by the package author.

Maintained by Jared Huling. Last updated 12 months ago.

color-palettes data-visualization ggplot2 visualization

23.0 match 25 stars 6.66 score 368 scripts

bhaskarvk

colormap:Color Palettes using Colormaps Node Module

Allows to generate colors from palettes defined in the colormap module of 'Node.js'. (see <https://github.com/bpostlethwaite/colormap> for more information). In total it provides 44 distinct palettes made from sequential and/or diverging colors. In addition to the pre defined palettes you can also specify your own set of colors. There are also scale functions that can be used with 'ggplot2'.

Maintained by Bhaskar Karambelkar. Last updated 3 years ago.

color-palettes colormap ggplot2 ggplot2-scales palettes

24.9 match 58 stars 6.12 score 225 scripts

samuel-marsh

scCustomize:Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing

Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'. 'scCustomize' aims to provide 1) Customized visualizations for aid in ease of use and to create more aesthetic and functional visuals. 2) Improve speed/reproducibility of common tasks/pieces of code in scRNA-seq analysis with a single or group of functions. For citation please use: Marsh SE (2021) "Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing" <doi:10.5281/zenodo.5706430> RRID:SCR_024675.

Maintained by Samuel Marsh. Last updated 3 months ago.

customization ggplot2 scrna-seq seurat single-cell single-cell-genomics single-cell-rna-seq visualization

17.1 match 242 stars 8.75 score 1.1k scripts

hneth

riskyr:Rendering Risk Literacy more Transparent

Risk-related information (like the prevalence of conditions, the sensitivity and specificity of diagnostic tests, or the effectiveness of interventions or treatments) can be expressed in terms of frequencies or probabilities. By providing a toolbox of corresponding metrics and representations, 'riskyr' computes, translates, and visualizes risk-related information in a variety of ways. Adopting multiple complementary perspectives provides insights into the interplay between key parameters and renders teaching and training programs on risk literacy more transparent.

Maintained by Hansjoerg Neth. Last updated 10 months ago.

2x2-matrix bayesian-inference contingency-table representation risk risk-literacy visualization

19.7 match 19 stars 7.36 score 80 scripts

nvietto

Rdune:'Creates Color Palettes Inspired by Dune'

Enables the use of color palettes inspired by the 'Dune' movies. These palettes are compatible with 'ggplot2'. See Wickham (2016) <doi:10.1007/978-3-319-24277-4> for more details on 'ggplot2'.

Maintained by Nicholas Vietto. Last updated 14 days ago.

color-palette data-visualization

27.6 match 4 stars 5.19 score 11 scripts

johnmackintosh

popthemes:colour palettes from some 90s pop album covers

colour palettes based on pop album and single covers. Contains a mix of sequential and qualitative palettes.

Maintained by John MacKintosh. Last updated 4 years ago.

colour-palettes ggplot2 music palettes

50.0 match 14 stars 2.85 score 4 scripts

dankelley

oce:Analysis of Oceanographic Data

Supports the analysis of Oceanographic data, including 'ADCP' measurements, measurements made with 'argo' floats, 'CTD' measurements, sectional data, sea-level time series, coastline and topographic data, etc. Provides specialized functions for calculating seawater properties such as potential temperature in either the 'UNESCO' or 'TEOS-10' equation of state. Produces graphical displays that conform to the conventions of the Oceanographic literature. This package is discussed extensively by Kelley (2018) "Oceanographic Analysis with R" <doi:10.1007/978-1-4939-8844-0>.

Maintained by Dan Kelley. Last updated 1 days ago.

oceanography fortran cpp

9.2 match 146 stars 15.42 score 4.2k scripts 18 dependents

nschiett

fishualize:Color Palettes Based on Fish Species

Implementation of color palettes based on fish species.

Maintained by Nina M. D. Schiettekatte. Last updated 11 months ago.

16.5 match 155 stars 8.54 score 370 scripts

timcdlucas

palettetown:Use Pokemon Inspired Colour Palettes

Use Pokemon(R) inspired palettes with additional 'ggplot2' scales. Palettes are the colours in each Pokemon's sprite, ordered by how common they are in the image. The first 386 Pokemon are currently provided.

Maintained by Tim Lucas. Last updated 8 years ago.

colour-schemes palettes pokemon

23.2 match 69 stars 6.00 score 97 scripts 1 dependents

leonawicz

trekcolors:Star Trek Color Palettes

Provides a dataset of predefined color palettes based on the Star Trek science fiction series, associated color palette functions, and additional functions for generating customized palettes that are on theme. The package also offers functions for applying the palettes to plots made using the 'ggplot2' package.

Maintained by Matthew Leonawicz. Last updated 6 months ago.

color-palettes lcars star-trek

23.7 match 28 stars 5.31 score 49 scripts 1 dependents

openanalytics

clinUtils:General Utility Functions for Analysis of Clinical Data

Utility functions to facilitate the import, the reporting and analysis of clinical data. Example datasets in 'SDTM' and 'ADaM' format, containing a subset of patients/domains from the 'CDISC Pilot 01 study' are also available as R datasets to demonstrate the package functionalities.

Maintained by Laure Cougnaud. Last updated 10 months ago.

18.4 match 3 stars 6.78 score 105 scripts 3 dependents

andrewheiss

colourlovers:R Client for the COLOURlovers API

Provides access to the COLOURlovers <https://www.colourlovers.com/> API, which offers color inspiration and color palettes.

Maintained by Andrew Heiss. Last updated 3 years ago.

color-palette colourlovers colourlovers-api graphics palette

21.4 match 109 stars 5.79 score 57 scripts

jmestret

DOYPAColors:Don't Overthink Your Palette of Colors

Access diverse 'ggplot2'-compatible color palettes for simplified data visualization.

Maintained by Jorge Mestre. Last updated 7 months ago.

27.7 match 5 stars 4.40 score 10 scripts

johnmackintosh

metallicaRt:Colour palettes based on Metallica studio album covers

Colour palettes based on Metallica studio album covers.

Maintained by John MacKintosh. Last updated 1 years ago.

colour-palettes data-visualisation data-visualization datascience ggplot2 ggplot2-themes metallica

39.7 match 19 stars 2.98 score 3 scripts

symbolixau

colourvalues:Assigns Colours to Values

Maps one of the viridis colour palettes, or a user-specified palette to values. Viridis colour maps are created by Stéfan van der Walt and Nathaniel Smith, and were set as the default palette for the 'Python' 'Matplotlib' library <https://matplotlib.org/>. Other palettes available in this library have been derived from 'RColorBrewer' <https://CRAN.R-project.org/package=RColorBrewer> and 'colorspace' <https://CRAN.R-project.org/package=colorspace> packages.

Maintained by David Cooley. Last updated 1 years ago.

colours palettes rcpp viridis cpp

15.5 match 46 stars 7.54 score 122 scripts 6 dependents

oxfordihtm

oxthema:Oxford Colours, Palettes, Fonts, and Themes

Colours, palettes, fonts, and themes based on University of Oxford's visual identity guidelines <https://communications.web.ox.ac.uk/communications-resources/visual-identity/identity-guidelines>.

Maintained by Ernest Guevarra. Last updated 5 months ago.

ggplot-themes oxford

22.6 match 3 stars 4.91 score 10 scripts

corymccartan

wacolors:Colorblind-Friendly Palettes from Washington State

Color palettes taken from the landscapes and cities of Washington state. Colors were extracted from a set of photographs, and then combined to form a set of continuous and discrete palettes. Continuous palettes were designed to be perceptually uniform, while discrete palettes were chosen to maximize contrast at several different levels of overall brightness and saturation. Each palette has been evaluated to ensure colors are distinguishable by colorblind people.

Maintained by Cory McCartan. Last updated 3 years ago.

color-palette colorblind colorblind-friendly-palettes data-visualization washington-state

25.7 match 14 stars 4.31 score 29 scripts

dieghernan

tidyterra:'tidyverse' Methods and 'ggplot2' Helpers for 'terra' Objects

Extension of the 'tidyverse' for 'SpatRaster' and 'SpatVector' objects of the 'terra' package. It includes also new 'geom_' functions that provide a convenient way of visualizing 'terra' objects with 'ggplot2'.

Maintained by Diego Hernangómez. Last updated 1 days ago.

terra ggplot-extension r-spatial rspatial

8.0 match 191 stars 13.62 score 1.9k scripts 25 dependents

turtletopia

gglgbtq:Show Pride on 'ggplot2' Plots

Provides multiple palettes based on pride flags with tailored themes.

Maintained by Laura Bakala. Last updated 8 months ago.

ggplot2 ggplot2-themes lgbt palettes pride pride-flags

20.0 match 16 stars 5.41 score 16 scripts

nathansam

gameR:Color Palettes Inspired by Video Games

Palettes based on video games.

Maintained by Nathan Constantine-Cooke. Last updated 4 months ago.

gaming ggplot2 palettes

18.6 match 7 stars 5.50 score 15 scripts

inbo

INBOtheme:Themes for ggplot2

Several themes for the ggplot2 package. Among others themes complying with the style guide for the Research Institute for Nature and Forest (INBO) and Elsevier journals.

Maintained by Thierry Onkelinx. Last updated 2 years ago.

ggplot2 ggplot2-themes

19.0 match 3 stars 5.20 score 356 scripts

stemangiola

tidyHeatmap:A Tidy Implementation of Heatmap

This is a tidy implementation for heatmap. At the moment it is based on the (great) package 'ComplexHeatmap'. The goal of this package is to interface a tidy data frame with this powerful tool. Some of the advantages are: Row and/or columns colour annotations are easy to integrate just specifying one parameter (column names). Custom grouping of rows is easy to specify providing a grouped tbl. For example: df %>% group_by(...). Labels size adjusted by row and column total number. Default use of Brewer and Viridis palettes.

Maintained by Stefano Mangiola. Last updated 1 months ago.

assaydomain infrastructure brewer complexheatmap custom-palette dplyr graphviz heatmap mtcars plotting rstudio scale tibble tidy tidy-data-frame tidybulk tidyverse viridis

9.5 match 335 stars 10.23 score 197 scripts 1 dependents

best-practice-and-impact

afcharts:Produce Charts Following UK Government Analysis Function Guidance

Colour palettes and a 'ggplot2' theme to follow the UK Government Analysis Function best practice guidance for producing data visualisations, available at <https://analysisfunction.civilservice.gov.uk/policy-store/data-visualisation-charts/>. Includes continuous and discrete colour and fill scales, as well as a 'ggplot2' theme.

Maintained by Olivia Box Power. Last updated 2 months ago.

12.6 match 21 stars 7.61 score 7 scripts

aljrico

harrypotter:Palettes Generated from All "Harry Potter" Movies

Implementation of characteristic palettes inspired in the Wizarding World and the Harry Potter movie franchise.

Maintained by Alejandro Jimenez Rico. Last updated 5 years ago.

color-palette harry harry-potter plot

15.6 match 101 stars 6.11 score 254 scripts

jolars

qualpalr:Automatic Generation of Qualitative Color Palettes

Automatic generation of maximally distinct qualitative color palettes, optionally tailored to color deficiency. A list of colors or a subspace of a color space is used as input and then projected to the DIN99d color space, where colors that are maximally distinct are chosen algorithmically.

Maintained by Johan Larsson. Last updated 6 months ago.

color visualization cpp

12.7 match 23 stars 7.45 score 162 scripts 1 dependents

johnbaums

hues:Distinct Colour Palettes Based on 'iwanthue'

Creating effective colour palettes for figures is challenging. This package generates and plot palettes of optimally distinct colours in perceptually uniform colour space, based on 'iwanthue' <http://tools.medialab.sciences-po.fr/iwanthue/>. This is done through k-means clustering of CIE Lab colour space, according to user-selected constraints on hue, chroma, and lightness.

Maintained by John Baumgartner. Last updated 5 years ago.

color palettes

17.2 match 34 stars 5.46 score 170 scripts

nrennie

RSSthemes:RSS Palettes and Themes

Defines colour palettes and themes for Royal Statistical Society (RSS) publications, including Significance magazine. Palettes and themes are supported in both base R and 'ggplot2' graphics, and are intended to be used by authors submitting to RSS publications.

Maintained by Nicola Rennie. Last updated 1 years ago.

24.5 match 12 stars 3.78 score 9 scripts

australianantarcticdivision

palr:Colour Palettes for Data

Colour palettes for data, based on some well known public data sets. Includes helper functions to map absolute values to known palettes, and capture the work of image colour mapping as raster data sets.

Maintained by Michael D. Sumner. Last updated 8 months ago.

14.4 match 3 stars 6.32 score 56 scripts 4 dependents

kevinsblake

NatParksPalettes:Color Palettes Inspired by National Parks

Color palettes for data visualization inspired by National Parks. Currently contains 15 color schemes and checks for colorblind-friendliness of palettes.

Maintained by Kevin Blake. Last updated 2 months ago.

colorpalette data-visualization

13.5 match 242 stars 6.53 score 281 scripts

openanalytics

inTextSummaryTable:Creation of in-Text Summary Table

Creation of tables of summary statistics or counts for clinical data (for 'TLFs'). These tables can be exported as in-text table (with the 'flextable' package) for a Clinical Study Report (Word format) or a 'topline' presentation (PowerPoint format), or as interactive table (with the 'DT' package) to an html document for clinical data review.

Maintained by Laure Cougnaud. Last updated 9 months ago.

15.7 match 1 stars 5.52 score 47 scripts

neuwirthe

RColorBrewer:ColorBrewer Palettes

Provides color schemes for maps (and other graphics) designed by Cynthia Brewer as described at http://colorbrewer2.org.

Maintained by Erich Neuwirth. Last updated 3 years ago.

6.0 match 9 stars 14.38 score 106k scripts 8.2k dependents

bioc

POMA:Tools for Omics Data Analysis

The POMA package offers a comprehensive toolkit designed for omics data analysis, streamlining the process from initial visualization to final statistical analysis. Its primary goal is to simplify and unify the various steps involved in omics data processing, making it more accessible and manageable within a single, intuitive R package. Emphasizing on reproducibility and user-friendliness, POMA leverages the standardized SummarizedExperiment class from Bioconductor, ensuring seamless integration and compatibility with a wide array of Bioconductor tools. This approach guarantees maximum flexibility and replicability, making POMA an essential asset for researchers handling omics datasets. See https://github.com/pcastellanoescuder/POMAShiny. Paper: Castellano-Escuder et al. (2021) <doi:10.1371/journal.pcbi.1009148> for more details.

Maintained by Pol Castellano-Escuder. Last updated 4 months ago.

batcheffect classification clustering decisiontree dimensionreduction multidimensionalscaling normalization preprocessing principalcomponent regression rnaseq software statisticalmethod visualization bioconductor bioinformatics data-visualization dimension-reduction exploratory-data-analysis machine-learning omics-data-integration pipeline pre-processing statistical-analysis user-friendly workflow

10.3 match 11 stars 8.23 score 20 scripts 1 dependents

karlines

shape:Functions for Plotting Graphical Shapes, Colors

Functions for plotting graphical shapes such as ellipses, circles, cylinders, arrows, ...

Maintained by Karline Soetaert. Last updated 1 years ago.

7.7 match 10.86 score 984 scripts 1.4k dependents

maximekuntz

Paris2024Colours:Color Palettes Inspired by Paris 2024 Olympic and Paralympic Games

Palettes inspired by Paris 2024 Olympic and Paralympic Games for data visualizations. Length of color palettes is configurable.

Maintained by Maxime Kuntz. Last updated 9 months ago.

20.6 match 5 stars 4.00 score 1 scripts

rmi-pacta

r2dii.colours:2 Degrees Investing Colour Palettes in Different Formats

Get colour values from different colour palettes used by 2 Degrees Investing (2DII) organization in their reserach streams. Different ways to obtain the colour values are available: dataframe or a function call.

Maintained by Monika Furdyna. Last updated 11 months ago.

27.2 match 3 stars 2.95 score 6 scripts 2 dependents

leonawicz

imgpalr:Create Color Palettes from Images

Provides ability to create color palettes from image files. It offers control over the type of color palette to derive from an image (qualitative, sequential or divergent) and other palette properties. Quantiles of an image color distribution can be trimmed. Near-black or near-white colors can be trimmed in RGB color space independent of trimming brightness or saturation distributions in HSV color space. Creating sequential palettes also offers control over the order of HSV color dimensions to sort by. This package differs from other related packages like 'RImagePalette' in approaches to quantizing and extracting colors in images to assemble color palettes and the level of user control over palettes construction.

Maintained by Matthew Leonawicz. Last updated 6 months ago.

color color-palette image-classification image-processing

17.1 match 52 stars 4.65 score 17 scripts

mandymejia

ciftiTools:Tools for Reading, Writing, Viewing and Manipulating CIFTI Files

CIFTI files contain brain imaging data in "grayordinates," which represent the gray matter as cortical surface vertices (left and right) and subcortical voxels (cerebellum, basal ganglia, and other deep gray matter). 'ciftiTools' provides a unified environment for reading, writing, visualizing and manipulating CIFTI-format data. It supports the "dscalar," "dlabel," and "dtseries" intents. Grayordinate data is read in as a "xifti" object, which is structured for convenient access to the data and metadata, and includes support for surface geometry files to enable spatially-dependent functionality such as static or interactive visualizations and smoothing.

Maintained by Amanda Mejia. Last updated 2 months ago.

8.8 match 47 stars 8.90 score 176 scripts 4 dependents

andremueller

colorpatch:Optimized Rendering of Fold Changes and Confidence Values

Shows color patches for encoding fold changes (e.g. log ratios) together with confidence values within a single diagram. This is especially useful for rendering gene expression data as well as other types of differential experiments. In addition to different rendering methods (ggplot extensions) functionality for perceptually optimizing color palettes are provided. Furthermore the package provides extension methods of the colorspace color-class in order to simplify the work with palettes (a.o. length, as.list, and append are supported).

Maintained by Andre Mueller. Last updated 8 years ago.

24.0 match 3.23 score 34 scripts

brry

berryFunctions:Function Collection Related to Plotting and Hydrology

Draw horizontal histograms, color scattered points by 3rd dimension, enhance date- and log-axis plots, zoom in X11 graphics, trace errors and warnings, use the unit hydrograph in a linear storage cascade, convert lists to data.frames and arrays, fit multiple functions.

Maintained by Berry Boessenkool. Last updated 1 months ago.

8.0 match 13 stars 9.43 score 350 scripts 16 dependents

leonawicz

legocolors:Official Lego Color Palettes

Provides a dataset containing several color naming conventions established by multiple sources, along with associated color metadata. The package also provides related helper functions for mapping among the different Lego color naming conventions and between Lego colors, hex colors, and 'R' color names, making it easy to convert any color palette to one based on existing Lego colors while keeping as close to the original color palette as possible. The functions use nearest color matching based on Euclidean distance in RGB space. Naming conventions for color mapping include those from 'BrickLink' (<https://www.bricklink.com>), 'The Lego Group' (<https://www.lego.com>), 'LDraw' (<https://www.ldraw.org/>), and 'Peeron' (<http://www.peeron.com/>).

Maintained by Matthew Leonawicz. Last updated 6 months ago.

color-palettes lego

20.6 match 7 stars 3.66 score 13 scripts

paezha

MexBrewer:Color Palettes Inspired by Works of Mexican Painters and Muralists

Color palettes inspired by the works of Mexican painters and muralists. The package includes functions that return vectors of colors and also functions to use color and fill scales in 'ggplot2' visualizations.

Maintained by Antonio Páez. Last updated 2 years ago.

colors dataviz mexico rtistry

13.6 match 24 stars 5.31 score 169 scripts

ms609

Ternary:Create Ternary and Holdridge Plots

Plots ternary diagrams (simplex plots / Gibbs triangles) and Holdridge life zone plots <doi:10.1126/science.105.2727.367> using the standard graphics functions. Allows custom annotation, interpolating, contouring and scaling of plotting region. Includes a 'Shiny' user interface for point-and-click ternary plotting. An alternative to 'ggtern', which uses the 'ggplot2' family of plotting functions.

Maintained by Martin R. Smith. Last updated 5 months ago.

graphics plotting plotting-in-r ternary-plots

7.5 match 33 stars 9.58 score 103 scripts 5 dependents

openintrostat

openintro:Datasets and Supplemental Functions from 'OpenIntro' Textbooks and Labs

Supplemental functions and data for 'OpenIntro' resources, which includes open-source textbooks and resources for introductory statistics (<https://www.openintro.org/>). The package contains datasets used in our open-source textbooks along with custom plotting functions for reproducing book figures. Note that many functions and examples include color transparency; some plotting elements may not show up properly (or at all) when run in some versions of Windows operating system.

Maintained by Mine Çetinkaya-Rundel. Last updated 3 months ago.

data openintro

6.2 match 240 stars 11.39 score 6.0k scripts

beanumber

teamcolors:Color Palettes for Pro Sports Teams

Provides color palettes corresponding to professional and amateur, sports teams. These can be useful in creating data graphics that are themed for particular teams.

Maintained by Benjamin S. Baumer. Last updated 4 months ago.

10.8 match 48 stars 6.46 score 202 scripts

unhcr-dataviz

unhcrthemes:UNHCR 'ggplot2' Theme and Colour Palettes

A 'ggplot2' theme and color palettes following the United Nations High Commissioner for Refugees (UNHCR) Data Visualization Guidelines recommendations.

Maintained by Cédric Vidonne. Last updated 2 months ago.

ggplot2 ggplot2-scales ggplot2-themes

10.8 match 27 stars 6.44 score 102 scripts

pdwaggoner

amerika:American Politics-Inspired Color Palette Generator

A crisp, clean color palette generator inspired by American politics, with colors ranging from blue on the left to gray in the middle and red on the right. A variety of palettes allow for a range of applications from brief discrete scales (e.g., three colors for Democrats, Independents, and Republicans) to continuous interpolated arrays including dozens of shades graded from blue (left) to red (right).

Maintained by Philip D. Waggoner. Last updated 7 months ago.

color palette-generation visualization

14.9 match 7 stars 4.66 score 11 scripts 2 dependents

mrjoh3

c3:'C3.js' Chart Library

Create interactive charts with the 'C3.js' <http://c3js.org/> charting library. All plot types in 'C3.js' are available and include line, bar, scatter, and mixed geometry plots. Plot annotations, labels and axis are highly adjustable. Interactive web based charts can be embedded in R Markdown documents or Shiny web applications.

Maintained by Matt Johnson. Last updated 4 years ago.

chart htmlwidget plots

10.5 match 39 stars 6.45 score 72 scripts

rstudio

gt:Easily Create Presentation-Ready Display Tables

Build display tables from tabular data with an easy-to-use set of functions. With its progressive approach, we can construct display tables with a cohesive set of table parts. Table values can be formatted using any of the included formatting functions. Footnotes and cell styles can be precisely added through a location targeting system. The way in which 'gt' handles things for you means that you don't often have to worry about the fine details.

Maintained by Richard Iannone. Last updated 11 days ago.

docx easy-to-use html latex rtf summary-tables

3.7 match 2.1k stars 18.36 score 20k scripts 112 dependents

ibarraespinosa

cptcity:'cpt-city' Colour Gradients

Incorporates colour gradients from the 'cpt-city' web archive available at <http://soliton.vm.bytemark.co.uk/pub/cpt-city/>.

Maintained by Sergio Ibarra-Espinosa. Last updated 2 years ago.

color colors colour colour-palette colours cpt-city cptcity gradient

11.0 match 18 stars 6.12 score 243 scripts 2 dependents

bioc

clustifyr:Classifier for Single-cell RNA-seq Using Cell Clusters

Package designed to aid in classifying cells from single-cell RNA sequencing data using external reference data (e.g., bulk RNA-seq, scRNA-seq, microarray, gene lists). A variety of correlation based methods and gene list enrichment methods are provided to assist cell type assignment.

Maintained by Rui Fu. Last updated 5 months ago.

singlecell annotation sequencing microarray geneexpression assign-identities clusters marker-genes rna-seq single-cell-rna-seq

7.0 match 119 stars 9.63 score 296 scripts

kassambara

ggpubr:'ggplot2' Based Publication Ready Plots

The 'ggplot2' package is excellent and flexible for elegant data visualization in R. However the default generated plots requires some formatting before we can send them for publication. Furthermore, to customize a 'ggplot', the syntax is opaque and this raises the level of difficulty for researchers with no advanced R programming skills. 'ggpubr' provides some easy-to-use functions for creating and customizing 'ggplot2'- based publication ready plots.

Maintained by Alboukadel Kassambara. Last updated 2 years ago.

4.0 match 1.2k stars 16.68 score 65k scripts 409 dependents

crunch-io

crunch:Crunch.io Data Tools

The Crunch.io service <https://crunch.io/> provides a cloud-based data store and analytic engine, as well as an intuitive web interface. Using this package, analysts can interact with and manipulate Crunch datasets from within R. Importantly, this allows technical researchers to collaborate naturally with team members, managers, and clients who prefer a point-and-click interface.

Maintained by Greg Freedman Ellis. Last updated 11 days ago.

6.2 match 9 stars 10.53 score 200 scripts 2 dependents

egenn

rtemis:Machine Learning and Visualization

Advanced Machine Learning and Visualization. Unsupervised Learning (Clustering, Decomposition), Supervised Learning (Classification, Regression), Cross-Decomposition, Bagging, Boosting, Meta-models. Static and interactive graphics.

Maintained by E.D. Gennatas. Last updated 1 months ago.

data-science data-visualization machine-learning machine-learning-library visualization

9.1 match 145 stars 7.09 score 50 scripts 2 dependents

ndphillips

yarrr:A Companion to the e-Book "YaRrr!: The Pirate's Guide to R"

Contains a mixture of functions and data sets referred to in the introductory e-book "YaRrr!: The Pirate's Guide to R". The latest version of the e-book is available for free at <https://www.thepiratesguidetor.com>.

Maintained by Nathaniel Phillips. Last updated 12 months ago.

6.0 match 78 stars 10.67 score 1.2k scripts 2 dependents

satijalab

Seurat:Tools for Single Cell Genomics

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.

Maintained by Paul Hoffman. Last updated 1 years ago.

human-cell-atlas single-cell-genomics single-cell-rna-seq cpp

3.8 match 2.4k stars 16.86 score 50k scripts 73 dependents

cran

MetBrewer:Color Palettes Inspired by Works at the Metropolitan Museum of Art

Palettes Inspired by Works at the Metropolitan Museum of Art in New York. Currently contains over 50 color schemes and checks for colorblind-friendliness of palettes. Colorblind accessibility checked using the '{colorblindcheck} package by Jakub Nowosad'<https://jakubnowosad.com/colorblindcheck/>.

Maintained by Blake Robert Mills. Last updated 3 years ago.

24.7 match 2.51 score 5 dependents

jakelawlor

PNWColors:Color Palettes Inspired by Nature in the US Pacific Northwest

PNW-Inspired Palettes for 'R' data visualizations. Palettes are variable in length and checked for colorblind accessibility from hue, saturation, and lightness value scaling using the 'Chroma.js Color Palette Helper' <https://gka.github.io/palettes/>.

Maintained by Jake Lawlor. Last updated 3 years ago.

7.9 match 256 stars 7.73 score 694 scripts 2 dependents

musajajorge

makePalette:Make Palette

Functions that allow you to create your own color palette from an image, using mathematical algorithms.

Maintained by Jorge L. C. Musaja. Last updated 1 years ago.

clara color kmeans kmeans-algorithm kmeans-clustering kmeans-clustering-algorithm palette pam

17.9 match 5 stars 3.40 score 1 scripts

jkaupp

nord:Arctic Ice Studio's Nord and Group of Seven Inspired Colour Palettes for 'ggplot2'

Provides the Arctic Ice Studio's Nord and Group of Seven inspired colour palettes for use with 'ggplot2' via custom functions.

Maintained by Jake Kaupp. Last updated 6 years ago.

10.7 match 52 stars 5.66 score 177 scripts

katelyndiaz

ggRtsy:Add Some Van Gogh Colors and Overlay Colors on Your 'ggplot()'

Works with 'ggplot2' to add a Van Gogh color palette to the user’s repertoire. It also has a function that work alongside 'ggplot2' to create more interesting data visualizations and add contextual information to the user’s plots.

Maintained by Katelyn Diaz. Last updated 1 years ago.

color-palette ggplot2 visualization

12.9 match 2 stars 4.60 score 6 scripts

ropensci

visdat:Preliminary Visualisation of Data

Create preliminary exploratory data visualisations of an entire dataset to identify problems or unexpected features using 'ggplot2'.

Maintained by Nicholas Tierney. Last updated 8 months ago.

exploratory-data-analysis missingness peer-reviewed ropensci visualisation

4.5 match 452 stars 13.31 score 2.1k scripts 11 dependents

doehm

survivoR:Data from all Seasons of Survivor (US) TV Series in Tidy Format

Datasets detailing the results, castaways, and events of each season of Survivor for the US, Australia, South Africa, New Zealand, and the UK. This includes details on the cast, voting history, immunity and reward challenges, jury votes, boot order, advantage details, and episode ratings. Use this for analysis of trends and statistics of the game.

Maintained by Daniel Oehm. Last updated 2 days ago.

8.4 match 73 stars 7.08 score 94 scripts

cardiomoon

ztable:Zebra-Striped Tables in LaTeX and HTML Formats

Makes zebra-striped tables (tables with alternating row colors) in LaTeX and HTML formats easily from a data.frame, matrix, lm, aov, anova, glm, coxph, nls, fitdistr, mytable and cbind.mytable objects.

Maintained by Keon-Woong Moon. Last updated 2 years ago.

7.4 match 21 stars 7.90 score 212 scripts 2 dependents

mrc-ide

epireview:Tools to update and summarise the latest pathogen data from the Pathogen Epidemiology Review Group (PERG)

Contains the latest open access pathogen data from the Pathogen Epidemiology Review Group (PERG). Tools are available to update pathogen databases with new peer-reviewed data as it becomes available, and to summarise the latest data using tables and figures.

Maintained by Sangeeta Bhatia. Last updated 3 days ago.

8.6 match 30 stars 6.76 score 6 scripts

bioc

Voyager:From geospatial to spatial omics

SpatialFeatureExperiment (SFE) is a new S4 class for working with spatial single-cell genomics data. The voyager package implements basic exploratory spatial data analysis (ESDA) methods for SFE. Univariate methods include univariate global spatial ESDA methods such as Moran's I, permutation testing for Moran's I, and correlograms. Bivariate methods include Lee's L and cross variogram. Multivariate methods include MULTISPATI PCA and multivariate local Geary's C recently developed by Anselin. The Voyager package also implements plotting functions to plot SFE data and ESDA results.

Maintained by Lambda Moses. Last updated 3 months ago.

geneexpression spatial transcriptomics visualization bioconductor eda esda exploratory-data-analysis omics spatial-statistics spatial-transcriptomics

6.6 match 87 stars 8.71 score 173 scripts

reconhub

incidence:Compute, Handle, Plot and Model Incidence of Dated Events

Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.

Maintained by Tim Taylor. Last updated 7 months ago.

outbreak

4.7 match 58 stars 12.06 score 504 scripts 11 dependents

hrbrmstr

swatches:Read, Inspect, Manipulate, and Save Color Swatch Files

There are numerous places to create and download color palettes. These are usually shared in Adobe swatch file formats of some kind. There is also often the need to use standard palettes developed within an organization to ensure that aesthetics are carried over into all projects and output. Now there is a way to read these swatch files in R and avoid transcribing or converting color values by hand or or with other programs. This package provides functions to read and inspect Adobe Color (ACO), Adobe Swatch Exchange (ASE), GIMP Palette (GPL), OpenOffice palette (SOC) files and KDE Palette ("colors") files. Detailed descriptions of Adobe Color and Swatch Exchange file formats as well as other swatch file formats can be found at <http://www.selapa.net/swatches/colors/fileformats.php>.

Maintained by Bob Rudis. Last updated 3 years ago.

aco ase swatch swatches

11.8 match 57 stars 4.71 score 18 scripts

hwarden162

AcademicThemes:Colour Plots with Palettes from Academic Institutions

Functionality to allow users to easily colour plots with the colour palettes of various academic institutions.

Maintained by Hugh Warden. Last updated 1 years ago.

12.3 match 3 stars 4.48 score 5 scripts

mtennekes

treemap:Treemap Visualization

A treemap is a space-filling visualization of hierarchical structures. This package offers great flexibility to draw treemaps.

Maintained by Martijn Tennekes. Last updated 2 years ago.

6.1 match 8.88 score 2.2k scripts 7 dependents

grunwaldlab

metacoder:Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

Reads, plots, and manipulates large taxonomic data sets, like those generated from modern high-throughput sequencing, such as metabarcoding (i.e. amplification metagenomics, 16S metagenomics, etc). It provides a tree-based visualization called "heat trees" used to depict statistics for every taxon in a taxonomy using color and size. It also provides various functions to do common tasks in microbiome bioinformatics on data in the 'taxmap' format defined by the 'taxa' package. The 'metacoder' package is described in the publication by Foster et al. (2017) <doi:10.1371/journal.pcbi.1005404>.

Maintained by Zachary Foster. Last updated 1 months ago.

community-diversity hierarchical metabarcoding pcr taxonomy trees cpp

5.6 match 140 stars 9.64 score 328 scripts

warwick-stats-resources

warwickplots:Palettes and Themes Consistent with The University of Warwick's Brand

Colour palettes and a 'ggplot2' theme that are consistent with The University of Warwick' branding. Built using the 'palettes' package, which provides methods for printing, formatting, casting and coercion, extraction and updating of components, plotting, colour mixing arithmetic, and colour interpolation.

Maintained by Ella Kaye. Last updated 10 months ago.

15.1 match 1 stars 3.56 score 12 scripts

funkyheatmap

funkyheatmap:Generating Funky Heatmaps for Data Frames

Allows generating heatmap-like visualisations for data frames. Funky heatmaps can be fine-tuned by providing annotations of the columns and rows, which allows assigning multiple palettes or geometries or grouping rows and columns together in categories. Saelens et al. (2019) <doi:10.1038/s41587-019-0071-9>.

Maintained by Robrecht Cannoodt. Last updated 1 months ago.

6.4 match 171 stars 8.37 score 76 scripts

erblast

easyalluvial:Generate Alluvial Plots with a Single Line of Code

Alluvial plots are similar to sankey diagrams and visualise categorical data over multiple dimensions as flows. (Rosvall M, Bergstrom CT (2010) Mapping Change in Large Networks. PLoS ONE 5(1): e8694. <doi:10.1371/journal.pone.0008694> Their graphical grammar however is a bit more complex then that of a regular x/y plots. The 'ggalluvial' package made a great job of translating that grammar into 'ggplot2' syntax and gives you many options to tweak the appearance of an alluvial plot, however there still remains a multi-layered complexity that makes it difficult to use 'ggalluvial' for explorative data analysis. 'easyalluvial' provides a simple interface to this package that allows you to produce a decent alluvial plot from any dataframe in either long or wide format from a single line of code while also handling continuous data. It is meant to allow a quick visualisation of entire dataframes with a focus on different colouring options that can make alluvial plots a great tool for data exploration.

Maintained by Bjoern Koneswarakantha. Last updated 1 years ago.

8.7 match 110 stars 6.13 score 81 scripts 1 dependents

lovestat

seecolor:View Colors Used in R Objects in the Console

Output colors used in literal vectors, palettes and plot objects (ggplot).

Maintained by Shangchen Song. Last updated 2 years ago.

palette

11.7 match 3 stars 4.54 score 23 scripts

ashenoy-cmbi

grafify:Easy Graphs for Data Visualisation and Linear Models for ANOVA

Easily explore data by plotting graphs with a few lines of code. Use these ggplot() wrappers to quickly draw graphs of scatter/dots with box-whiskers, violins or SD error bars, data distributions, before-after graphs, factorial ANOVA and more. Customise graphs in many ways, for example, by choosing from colour blind-friendly palettes (12 discreet, 3 continuous and 2 divergent palettes). Use the simple code for ANOVA as ordinary (lm()) or mixed-effects linear models (lmer()), including randomised-block or repeated-measures designs, and fit non-linear outcomes as a generalised additive model (gam) using mgcv(). Obtain estimated marginal means and perform post-hoc comparisons on fitted models (via emmeans()). Also includes small datasets for practising code and teaching basics before users move on to more complex designs. See vignettes for details on usage <https://grafify.shenoylab.com/>. Citation: <doi:10.5281/zenodo.5136508>.

Maintained by Avinash R Shenoy. Last updated 1 days ago.

ggplot2 linear-models post-hoc-comparisons statistics vignettes

9.7 match 48 stars 5.31 score 107 scripts

alaninglis

colouR:Create Colour Palettes from Images

Can take in images in either .jpg, .jpeg, or .png format and creates a colour palette of the most frequent colours used in the image. Also provides some custom colour palettes.

Maintained by Alan Inglis. Last updated 1 years ago.

13.8 match 1 stars 3.70 score 2 scripts

pwwang

plotthis:High-Level Plotting Built Upon 'ggplot2' and Other Plotting Packages

Provides high-level API and a wide range of options to create stunning, publication-quality plots effortlessly. It is built upon 'ggplot2' and other plotting packages, and is designed to be easy to use and to work seamlessly with 'ggplot2' objects. It is particularly useful for creating complex plots with multiple layers, facets, and annotations. It also provides a set of functions to create plots for specific types of data, such as Venn diagrams, alluvial diagrams, and phylogenetic trees. The package is designed to be flexible and customizable, and to work well with the 'ggplot2' ecosystem. The API can be found at <https://pwwang.github.io/plotthis/reference/index.html>.

Maintained by Panwen Wang. Last updated 15 hours ago.

ggplot2 plotting single-cell

9.1 match 36 stars 5.51 score 2 scripts

openanalytics

patientProfilesVis:Visualization of Patient Profiles

Creation of patient profile visualizations for exploration, diagnostic or monitoring purposes during a clinical trial. These static visualizations display a patient-specific overview of the evolution during the trial time frame of parameters of interest (as laboratory, ECG, vital signs), presence of adverse events, exposure to a treatment; associated with metadata patient information, as demography, concomitant medication. The visualizations can be tailored for specific domain(s) or endpoint(s) of interest. Visualizations are exported into patient profile report(s) or can be embedded in custom report(s).

Maintained by Laure Cougnaud. Last updated 9 months ago.

9.8 match 7 stars 5.15 score 9 scripts

momx

Momocs:Morphometrics using R

The goal of 'Momocs' is to provide a complete, convenient, reproducible and open-source toolkit for 2D morphometrics. It includes most common 2D morphometrics approaches on outlines, open outlines, configurations of landmarks, traditional morphometrics, and facilities for data preparation, manipulation and visualization with a consistent grammar throughout. It allows reproducible, complex morphometrics analyses and other morphometrics approaches should be easy to plug in, or develop from, on top of this canvas.

Maintained by Vincent Bonhomme. Last updated 1 years ago.

morphometrics

6.5 match 51 stars 7.42 score 346 scripts

atlas-aai

ratlas:ATLAS Formatting Functions and Templates

Provides templates, formatting tools, and 'ggplot2' themes tailored for the Accessible Teaching, Learning, and Assessment Systems (ATLAS) organization. These templates facilitate the creation of topic guides and technical reports, while the formatting functions enable users to customize numbers and tables to meet specific requirements. Additionally, the themes ensure a uniform visual style across graphics.

Maintained by W. Jake Thompson. Last updated 4 months ago.

bookdown ggplot2 ggplot2-themes rmarkdown rmarkdown-template

6.6 match 29 stars 7.28 score 20 scripts

uclahs-cds

BoutrosLab.plotting.general:Functions to Create Publication-Quality Plots

Contains several plotting functions such as barplots, scatterplots, heatmaps, as well as functions to combine plots and assist in the creation of these plots. These functions will give users great ease of use and customization options in broad use for biomedical applications, as well as general purpose plotting. Each of the functions also provides valid default settings to make plotting data more efficient and producing high quality plots with standard colour schemes simpler. All functions within this package are capable of producing plots that are of the quality to be presented in scientific publications and journals. P'ng et al.; BPG: Seamless, automated and interactive visualization of scientific data; BMC Bioinformatics 2019 <doi:10.1186/s12859-019-2610-2>.

Maintained by Paul Boutros. Last updated 5 months ago.

5.7 match 12 stars 8.36 score 414 scripts 6 dependents

coatless-rpkg

cetcolor:CET Perceptually Uniform Colour Maps

Collection of perceptually uniform colour maps made by Peter Kovesi (2015) "Good Colour Maps: How to Design Them" <arXiv:1509.03700> at the Centre for Exploration Targeting (CET).

Maintained by James Balamuta. Last updated 1 years ago.

cet color-palettes color-scheme

7.5 match 31 stars 6.08 score 78 scripts

ncss-tech

aqp:Algorithms for Quantitative Pedology

The Algorithms for Quantitative Pedology (AQP) project was started in 2009 to organize a loosely-related set of concepts and source code on the topic of soil profile visualization, aggregation, and classification into this package (aqp). Over the past 8 years, the project has grown into a suite of related R packages that enhance and simplify the quantitative analysis of soil profile data. Central to the AQP project is a new vocabulary of specialized functions and data structures that can accommodate the inherent complexity of soil profile information; freeing the scientist to focus on ideas rather than boilerplate data processing tasks <doi:10.1016/j.cageo.2012.10.020>. These functions and data structures have been extensively tested and documented, applied to projects involving hundreds of thousands of soil profiles, and deeply integrated into widely used tools such as SoilWeb <https://casoilresource.lawr.ucdavis.edu/soilweb-apps>. Components of the AQP project (aqp, soilDB, sharpshootR, soilReports packages) serve an important role in routine data analysis within the USDA-NRCS Soil Science Division. The AQP suite of R packages offer a convenient platform for bridging the gap between pedometric theory and practice.

Maintained by Dylan Beaudette. Last updated 29 days ago.

digital-soil-mapping ncss-tech nrcs pedology pedometrics soil soil-survey usda

3.9 match 55 stars 11.77 score 1.2k scripts 2 dependents

talgalili

heatmaply:Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2'

Create interactive cluster 'heatmaps' that can be saved as a stand- alone HTML file, embedded in 'R Markdown' documents or in a 'Shiny' app, and available in the 'RStudio' viewer pane. Hover the mouse pointer over a cell to show details or drag a rectangle to zoom. A 'heatmap' is a popular graphical method for visualizing high-dimensional data, in which a table of numbers are encoded as a grid of colored cells. The rows and columns of the matrix are ordered to highlight patterns and are often accompanied by 'dendrograms'. 'Heatmaps' are used in many fields for visualizing observations, correlations, missing values patterns, and more. Interactive 'heatmaps' allow the inspection of specific value by hovering the mouse over a cell, as well as zooming into a region of the 'heatmap' by dragging a rectangle around the relevant area. This work is based on the 'ggplot2' and 'plotly.js' engine. It produces similar 'heatmaps' to 'heatmap.2' with the advantage of speed ('plotly.js' is able to handle larger size matrix), the ability to zoom from the 'dendrogram' panes, and the placing of factor variables in the sides of the 'heatmap'.

Maintained by Tal Galili. Last updated 8 months ago.

d3-heatmap dendextend dendrogram ggplot2 heatmap plotly

3.2 match 386 stars 14.21 score 2.0k scripts 45 dependents

ms609

TreeTools:Create, Modify and Analyse Phylogenetic Trees

Efficient implementations of functions for the creation, modification and analysis of phylogenetic trees. Applications include: generation of trees with specified shapes; tree rearrangement; analysis of tree shape; rooting of trees and extraction of subtrees; calculation and depiction of split support; plotting the position of rogue taxa (Klopfstein & Spasojevic 2019) <doi:10.1371/journal.pone.0212942>; calculation of ancestor-descendant relationships, of 'stemwardness' (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>, and of tree balance (Mir et al. 2013, Lemant et al. 2022) <doi:10.1016/j.mbs.2012.10.005>, <doi:10.1093/sysbio/syac027>; artificial extinction (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>; import and export of trees from Newick, Nexus (Maddison et al. 1997) <doi:10.1093/sysbio/46.4.590>, and TNT <https://www.lillo.org.ar/phylogeny/tnt/> formats; and analysis of splits and cladistic information.

Maintained by Martin R. Smith. Last updated 1 months ago.

evolutionary-biology phylogenetic-trees phylogenetics cpp

4.5 match 21 stars 9.92 score 124 scripts 10 dependents

bioc

oposSOM:Comprehensive analysis of transcriptome data

This package translates microarray expression data into metadata of reduced dimension. It provides various sample-centered and group-centered visualizations, sample similarity analyses and functional enrichment analyses. The underlying SOM algorithm combines feature clustering, multidimensional scaling and dimension reduction, along with strong visualization capabilities. It enables extraction and description of functional expression modules inherent in the data.

Maintained by Henry Loeffler-Wirth. Last updated 5 months ago.

geneexpression differentialexpression genesetenrichment datarepresentation visualization cpp

9.9 match 4.48 score 7 scripts

bioc

HicAggR:Set of 3D genomic interaction analysis tools

This package provides a set of functions useful in the analysis of 3D genomic interactions. It includes the import of standard HiC data formats into R and HiC normalisation procedures. The main objective of this package is to improve the visualization and quantification of the analysis of HiC contacts through aggregation. The package allows to import 1D genomics data, such as peaks from ATACSeq, ChIPSeq, to create potential couples between features of interest under user-defined parameters such as distance between pairs of features of interest. It allows then the extraction of contact values from the HiC data for these couples and to perform Aggregated Peak Analysis (APA) for visualization, but also to compare normalized contact values between conditions. Overall the package allows to integrate 1D genomics data with 3D genomics data, providing an easy access to HiC contact values.

Maintained by Olivier Cuvier. Last updated 5 months ago.

software hic dataimport datarepresentation normalization visualization dna3dstructure atacseq chipseq dnaseseq rnaseq

9.0 match 4.90 score 3 scripts

nano-optics

planar:Multilayer Optics

Solves the electromagnetic problem of reflection and transmission at a planar multilayer interface. Also computed are the decay rates and emission profile for a dipolar emitter.

Maintained by Baptiste Auguié. Last updated 3 years ago.

openblas cpp

7.5 match 7 stars 5.83 score 65 scripts

idem-lab

idpalette:Some palettes for the IDEM, IDDU, and ACEFA research groups

What the package does (one paragraph).

Maintained by Gerry Ryan. Last updated 3 months ago.

13.7 match 5 stars 3.18 score 5 scripts

ggseg

ggseg:Plotting Tool for Brain Atlases

Contains 'ggplot2' geom for plotting brain atlases using simple features. The largest component of the package is the data for the two built-in atlases. Mowinckel & Vidal-Piñeiro (2020) <doi:10.1177/2515245920928009>.

Maintained by Athanasia Mo Mowinckel. Last updated 2 years ago.

3.8 match 221 stars 11.57 score 590 scripts 14 dependents

great-northern-diver

loon:Interactive Statistical Data Visualization

An extendable toolkit for interactive data visualization and exploration.

Maintained by R. Wayne Oldford. Last updated 2 years ago.

data-analysis data-science data-visualization exploratory-analysis exploratory-data-analysis high-dimensional-data interactive-graphics interactive-visualizations loon python statistical-analysis statistical-graphics statistics tcl-extension tk

4.8 match 48 stars 9.00 score 93 scripts 5 dependents

bioc

infercnv:Infer Copy Number Variation from Single-Cell RNA-Seq Data

Using single-cell RNA-Seq expression to visualize CNV in cells.

Maintained by Christophe Georgescu. Last updated 5 months ago.

software copynumbervariation variantdetection structuralvariation genomicvariation genetics transcriptomics statisticalmethod bayesian hiddenmarkovmodel singlecell jags cpp

3.9 match 595 stars 10.91 score 674 scripts

r-tmap

tmaptools:Thematic Map Tools

Set of tools for reading and processing spatial data. The aim is to supply the workflow to create thematic maps. This package also facilitates 'tmap', the package for visualizing thematic maps.

Maintained by Martijn Tennekes. Last updated 2 months ago.

3.6 match 42 stars 11.67 score 1.8k scripts 26 dependents

stuart-morrison

schemr:Convert Images to Usable Color Schemes

A fast and adaptable tool to convert photos and images into usable colour schemes for data visualisation. Contains functionality to extract colour palettes from images, as well for the conversion of images between colour spaces.

Maintained by Stuart Morrison. Last updated 2 months ago.

9.0 match 2 stars 4.64 score 12 scripts 2 dependents

openbiox

contribution:A Tiny Contribution Table Generator Based on 'ggplot2'

Contribution table for credit assignment based on 'ggplot2'. This can improve the author contribution information in academic journals and personal CV.

Maintained by Shixiang Wang. Last updated 2 years ago.

contribution credit ggplot2 research

8.0 match 11 stars 5.20 score 29 scripts

jthomasmock

gtExtras:Extending 'gt' for Beautiful HTML Tables

Provides additional functions for creating beautiful tables with 'gt'. The functions are generally wrappers around boilerplate or adding opinionated niche capabilities and helpers functions.

Maintained by Thomas Mock. Last updated 12 months ago.

data-science data-visualization datascience ggplot2 gt plots sparkline sparkline-graphs sparklines tables

3.5 match 199 stars 11.45 score 2.4k scripts 3 dependents

tomasokal

rtist:A Color Palette Generator

Color palettes from famous artists and paintings.

Maintained by Tomas Okal. Last updated 5 years ago.

9.7 match 26 stars 4.11 score 4 scripts

laresbernardo

lares:Analytics & Machine Learning Sidekick

Auxiliary package for better/faster analytics, visualization, data mining, and machine learning tasks. With a wide variety of family functions, like Machine Learning, Data Wrangling, Marketing Mix Modeling (Robyn), Exploratory, API, and Scrapper, it helps the analyst or data scientist to get quick and robust results, without the need of repetitive coding or advanced R programming skills.

Maintained by Bernardo Lares. Last updated 24 days ago.

analytics api automation automl data-science descriptive-statistics h2o machine-learning marketing mmm predictive-modeling puzzle rlanguage robyn visualization

4.0 match 233 stars 9.84 score 185 scripts 1 dependents

buveges

WrensBookshelf:A Collection of Palettes and Some Functions to Help Use Them

A collection of color palettes that were extracted from various books on my sons(Wren) bookshelf. Also included are a number of functions and wrappers to utilize them, as well as to subset the palettes to desired number/specific colors.

Maintained by Benjamin Uveges. Last updated 2 years ago.

11.8 match 4 stars 3.30 score

rmendels

rerddapXtracto:Extracts Environmental Data from 'ERDDAP™' Web Services

Contains three functions that access environmental data from any 'ERDDAP™' data web service. The rxtracto() function extracts data along a trajectory for a given "radius" around the point. The rxtracto_3D() function extracts data in a box. The rxtractogon() function extracts data in a polygon. All of those three function use the 'rerddap' package to extract the data, and should work with any 'ERDDAP™' server. There are also two functions, plotBBox() and plotTrack() that use the 'plotdap' package to simplify the creation of maps of the data.

Maintained by Roy Mendelssohn. Last updated 18 days ago.

6.7 match 14 stars 5.79 score 44 scripts

r-lib

cli:Helpers for Developing Command Line Interfaces

A suite of tools to build attractive command line interfaces ('CLIs'), from semantic elements: headings, lists, alerts, paragraphs, etc. Supports custom themes via a 'CSS'-like language. It also contains a number of lower level 'CLI' elements: rules, boxes, trees, and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI colors and text styles as well.

Maintained by Gábor Csárdi. Last updated 2 days ago.

cli

2.0 match 664 stars 19.33 score 1.4k scripts 14k dependents

mstrimas

colorist:Coloring Wildlife Distributions in Space-Time

Color and visualize wildlife distributions in space-time using raster data. In addition to enabling display of sequential change in distributions through the use of small multiples, 'colorist' provides functions for extracting several features of interest from a sequence of distributions and for visualizing those features using HCL (hue-chroma-luminance) color palettes. Resulting maps allow for "fair" visual comparison of intensity values (e.g., occurrence, abundance, or density) across space and time and can be used to address questions about where, when, and how consistently a species, group, or individual is likely to be found.

Maintained by Matthew Strimas-Mackey. Last updated 11 months ago.

6.9 match 14 stars 5.60 score 19 scripts

usaid-oha-si

glitr:Adorned SI style plots

Helps create and export ggplot2 charts in the style used by the GH OHA SI team. Includes multiple styles and themes to tweak plots to user needs. Sample testing data also available.

Maintained by Tim Essam. Last updated 3 months ago.

6.0 match 27 stars 6.43 score 279 scripts 1 dependents

helske

seqHMM:Mixture Hidden Markov Models for Social Sequence Data and Other Multivariate, Multichannel Categorical Time Series

Designed for fitting hidden (latent) Markov models and mixture hidden Markov models for social sequence data and other categorical time series. Also some more restricted versions of these type of models are available: Markov models, mixture Markov models, and latent class models. The package supports models for one or multiple subjects with one or multiple parallel sequences (channels). External covariates can be added to explain cluster membership in mixture models. The package provides functions for evaluating and comparing models, as well as functions for visualizing of multichannel sequence data and hidden Markov models. Models are estimated using maximum likelihood via the EM algorithm and/or direct numerical maximization with analytical gradients. All main algorithms are written in C++ with support for parallel computation. Documentation is available via several vignettes in this page, and the paper by Helske and Helske (2019, <doi:10.18637/jss.v088.i03>).

Maintained by Jouni Helske. Last updated 2 years ago.

categorical-data em-algorithm hidden-markov-models hmm mixture-markov-models time-series openblas cpp openmp

4.5 match 97 stars 8.51 score 92 scripts 1 dependents

bioc

BatchQC:Batch Effects Quality Control Software

Sequencing and microarray samples often are collected or processed in multiple batches or at different times. This often produces technical biases that can lead to incorrect results in the downstream analysis. BatchQC is a software tool that streamlines batch preprocessing and evaluation by providing interactive diagnostics, visualizations, and statistical analyses to explore the extent to which batch variation impacts the data. BatchQC diagnostics help determine whether batch adjustment needs to be done, and how correction should be applied before proceeding with a downstream analysis. Moreover, BatchQC interactively applies multiple common batch effect approaches to the data and the user can quickly see the benefits of each method. BatchQC is developed as a Shiny App. The output is organized into multiple tabs and each tab features an important part of the batch effect analysis and visualization of the data. The BatchQC interface has the following analysis groups: Summary, Differential Expression, Median Correlations, Heatmaps, Circular Dendrogram, PCA Analysis, Shape, ComBat and SVA.

Maintained by Jessica McClintock. Last updated 5 months ago.

batcheffect graphandnetwork microarray normalization principalcomponent sequencing software visualization qualitycontrol rnaseq preprocessing differentialexpression immunooncology

4.3 match 7 stars 8.99 score 54 scripts

hiweller

recolorize:Color-Based Image Segmentation

Automatic, semi-automatic, and manual functions for generating color maps from images. The idea is to simplify the colors of an image according to a metric that is useful for the user, using deterministic methods whenever possible. Many images will be clustered well using the out-of-the-box functions, but the package also includes a toolbox of functions for making manual adjustments (layer merging/isolation, blurring, fitting to provided color clusters or those from another image, etc). Also includes export methods for other color/pattern analysis packages (pavo, patternize, colordistance).

Maintained by Hannah Weller. Last updated 13 days ago.

4.9 match 39 stars 7.68 score 87 scripts

stephenmilborrow

rpart.plot:Plot 'rpart' Models: An Enhanced Version of 'plot.rpart'

Plot 'rpart' models. Extends plot.rpart() and text.rpart() in the 'rpart' package.

Maintained by Stephen Milborrow. Last updated 1 years ago.

3.9 match 5 stars 9.64 score 12k scripts 42 dependents

johnxhobbs

paletteknife:Create Colour Scales and Legend from Continuous or Categorical Vectors

Streamlines the steps for adding colour scales and associated legends when working with base R graphics, especially for interactive use. Popular palettes are included and pretty legends produced when mapping a large variety of vector classes to a colour scale. An additional helper for adding axes and grid lines complements the base::plot() work flow.

Maintained by John Hobbs. Last updated 3 years ago.

13.8 match 2.70 score 1 scripts

murrayjw

nbapalettes:An NBA Jersey Palette Generator

Palettes generated from NBA jersey colorways.

Maintained by Murray Josh. Last updated 4 years ago.

10.7 match 5 stars 3.40 score 1 scripts

jonathanlees

RPMG:Graphical User Interface (GUI) for Interactive R Analysis Sessions

Really Poor Man's Graphical User Interface, used to create interactive R analysis sessions with simple R commands.

Maintained by Jonathan M. Lees. Last updated 2 years ago.

11.8 match 3.10 score 52 scripts 8 dependents

aitap

cmocean:Beautiful Colour Maps for Oceanography

Perceptually uniform palettes for commonly used variables in oceanography as functions taking an integer and producing character vectors of colours. See Thyng, K.M., Greene, C.A., Hetland, R.D., Zimmerle, H.M. and S.F. DiMarco (2016) <doi:10.5670/oceanog.2016.66> for the guidelines adhered to when creating the palettes.

Maintained by Ivan Krylov. Last updated 7 months ago.

4.7 match 6 stars 7.76 score 264 scripts 3 dependents

bioboot

bio3d:Biological Structure Analysis

Utilities to process, organize and explore protein structure, sequence and dynamics data. Features include the ability to read and write structure, sequence and dynamic trajectory data, perform sequence and structure database searches, data summaries, atom selection, alignment, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, normal mode analysis, principal component analysis of heterogeneous structure data, and correlation network analysis from normal mode and molecular dynamics data. In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data. Please refer to the URLs below for more information.

Maintained by Barry Grant. Last updated 5 months ago.

zlib cpp

4.3 match 5 stars 8.49 score 1.4k scripts 10 dependents

dfsp-spirit

wal:Read and Write 'wal' Bitmap Image Files and Other 'Quake' Assets

Read 'Quake' assets including bitmap images and textures in 'wal' file format. This package also provides support for extracting these assets from 'WAD' and 'PAK' file archives. It can also read models in 'MDL' and 'MD2' formats.

Maintained by Tim Schäfer. Last updated 1 years ago.

image pak quake quake-engine quake2 textures wad wal

7.8 match 9 stars 4.65 score 1 scripts

openanalytics

clinDataReview:Clinical Data Review Tool

Creation of interactive tables, listings and figures ('TLFs') and associated report for exploratory analysis of data in a clinical trial, e.g. for clinical oversight activities. Interactive figures include sunburst, treemap, scatterplot, line plot and barplot of counts data. Interactive tables include table of summary statistics (as counts of adverse events, enrollment table) and listings. Possibility to compare data (summary table or listing) across two data batches/sets. A clinical data review report is created via study-specific configuration files and template 'R Markdown' reports contained in the package.

Maintained by Laure Cougnaud. Last updated 9 months ago.

5.0 match 11 stars 7.10 score 36 scripts

sjmgarnier

viridis:Colorblind-Friendly Color Maps for R

Color maps designed to improve graph readability for readers with common forms of color blindness and/or color vision deficiency. The color maps are also perceptually-uniform, both in regular form and also when converted to black-and-white for printing. This package also contains 'ggplot2' bindings for discrete and continuous color and fill scales. A lean version of the package called 'viridisLite' that does not include the 'ggplot2' bindings can be found at <https://cran.r-project.org/package=viridisLite>.

Maintained by Simon Garnier. Last updated 1 years ago.

color-blindness color-scheme

2.0 match 299 stars 17.92 score 49k scripts 1.2k dependents

ericpante

marmap:Import, Plot and Analyze Bathymetric and Topographic Data

Import xyz data from the NOAA (National Oceanic and Atmospheric Administration, <https://www.noaa.gov>), GEBCO (General Bathymetric Chart of the Oceans, <https://www.gebco.net>) and other sources, plot xyz data to prepare publication-ready figures, analyze xyz data to extract transects, get depth / altitude based on geographical coordinates, or calculate z-constrained least-cost paths.

Maintained by Benoit Simon-Bouhet. Last updated 8 months ago.

4.0 match 32 stars 8.86 score 524 scripts 1 dependents

rspatial

terra:Spatial Data Analysis

Methods for spatial data analysis with vector (points, lines, polygons) and raster (grid) data. Methods for vector data include geometric operations such as intersect and buffer. Raster methods include local, focal, global, zonal and geometric operations. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction, including with satellite remote sensing data. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/> to get started. 'terra' replaces the 'raster' package ('terra' can do more, and it is faster and easier to use).

Maintained by Robert J. Hijmans. Last updated 1 days ago.

geospatial raster spatial vector onetbb proj gdal geos cpp

2.0 match 559 stars 17.64 score 17k scripts 851 dependents

nenuial

ggeo:Themes and Helpers for ggplot2

This package provides helper functions for ggplot graphs and maps.

Maintained by Pascal Burkhard. Last updated 23 days ago.

9.9 match 1 stars 3.52 score 2 dependents

ocha-dap

gghdx:HDX Theme, Scales, and Other Conveniences for 'ggplot2'

A Humanitarian Data Exchange (HDX) theme, color palettes, and scales for 'ggplot2' to allow users to easily follow the HDX visual design guide, including convenience functions for for loading and using the Source Sans 3 font.

Maintained by Seth Caldwell. Last updated 6 months ago.

5.9 match 5 stars 5.87 score 74 scripts

david-barnett

microViz:Microbiome Data Analysis and Visualization

Microbiome data visualization and statistics tools built upon phyloseq.

Maintained by David Barnett. Last updated 3 months ago.

microbiome microbiome-analysis microbiota

5.5 match 114 stars 6.22 score 480 scripts

ropensci

rerddap:General Purpose Client for 'ERDDAP™' Servers

General purpose R client for 'ERDDAP™' servers. Includes functions to search for 'datasets', get summary information on 'datasets', and fetch 'datasets', in either 'csv' or 'netCDF' format. 'ERDDAP™' information: <https://upwell.pfeg.noaa.gov/erddap/information.html>.

Maintained by Roy Mendelssohn. Last updated 2 days ago.

earth science climate precipitation temperature storm buoy noaa api-client erddap noaa-data

3.3 match 41 stars 10.37 score 376 scripts 5 dependents

courtiol

IsoriX:Isoscape Computation and Inference of Spatial Origins using Mixed Models

Building isoscapes using mixed models and inferring the geographic origin of samples based on their isotopic ratios. This package is essentially a simplified interface to several other packages which implements a new statistical framework based on mixed models. It uses 'spaMM' for fitting and predicting isoscapes, and assigning an organism's origin depending on its isotopic ratio. 'IsoriX' also relies heavily on the package 'rasterVis' for plotting the maps produced with 'terra' using 'lattice'.

Maintained by Alexandre Courtiol. Last updated 6 months ago.

6.0 match 14 stars 5.59 score 56 scripts

tntp

tntpr:Data Analysis Tools Customized for TNTP

An assortment of functions and templates customized to meet the needs of data analysts at the non-profit organization TNTP. Includes functions for branded colors and plots, credentials management, repository set-up, and other common analytic tasks.

Maintained by Dustin Pashouwer. Last updated 4 months ago.

5.8 match 7 stars 5.83 score 13 scripts

cran

RanglaPunjab:Displays Palette of 5 Colors

Displays palette of 5 colors based on photos depicting the unique and vibrant culture of Punjab in Northern India. Since Punjab translates to ``Land of 5 Rivers'' there are 5 colors per palette. If users need more than 5 colors, they can merge 2 to 3 palettes to create their own color-combination, or they can cherry-pick their own custom colors. Users can view up to 3 palettes together. Users can also list all the palette choices. And last but not least, users can see the photo that inspired a particular palette.

Maintained by Sonia Ahluwalia. Last updated 7 years ago.

16.8 match 2.00 score

jennybc

repurrrsive:Examples of Recursive Lists and Nested or Split Data Frames

Recursive lists in the form of R objects, 'JSON', and 'XML', for use in teaching and examples. Examples include color palettes, Game of Thrones characters, 'GitHub' users and repositories, music collections, and entities from the Star Wars universe. Data from the 'gapminder' package is also included, as a simple data frame and in nested and split forms.

Maintained by Jennifer Bryan. Last updated 2 years ago.

data json xml

4.1 match 135 stars 8.05 score 612 scripts

poissonconsulting

poispalette:Poisson Palettes

An R package for Poisson Consulting colour palettes.

Maintained by Evan Amies-Galonski. Last updated 2 months ago.

11.7 match 2.78 score 3 scripts

drmowinckels

colorhex:Colors and Palettes from Color-Hex

The website <https://www.color-hex.com> is a great resource of hex colour codes and palettes. This package allows you to retrieve palettes and colour information from the website directly from R. There are also custom scale-functions for 'ggplot2'.

Maintained by Athanasia Mo Mowinckel. Last updated 2 years ago.

color-hex color-picker colors

9.9 match 19 stars 3.28 score 4 scripts

pachadotdev

tintin:Tintin Palette Generator

Palettes generated from Tintin covers. There is one palette per cover, with a total of 24 palettes of 5 colours each. Includes functions to interpolate colors in order to create more colors based on the provided palettes. The data is based on Cyr, et al. (2004) <doi:10.1503/cmaj.1041405> and Wikipedia <https://en.wikipedia.org/wiki/The_Adventures_of_Tintin>.

Maintained by Mauricio Vargas Sepulveda. Last updated 7 months ago.

ggplot2 ggplot2-scales

8.4 match 7 stars 3.85 score 5 scripts

sjmgarnier

viridisLite:Colorblind-Friendly Color Maps (Lite Version)

Color maps designed to improve graph readability for readers with common forms of color blindness and/or color vision deficiency. The color maps are also perceptually-uniform, both in regular form and also when converted to black-and-white for printing. This is the 'lite' version of the 'viridis' package that also contains 'ggplot2' bindings for discrete and continuous color and fill scales and can be found at <https://cran.r-project.org/package=viridis>.

Maintained by Simon Garnier. Last updated 2 years ago.

color-blindness color-scheme

2.0 match 67 stars 15.75 score 2.3k scripts 8.0k dependents

face-it-project

FjordLight:Available Light Within the Water Column and on the Seafloor of Arctic Fjords

Satellite data collected between 2003 and 2022, in conjunction with gridded bathymetric data (50-150 m resolution), are used to estimate the irradiance reaching the bottom of a series of representative EU Arctic fjords. An Earth System Science Data (ESSD) manuscript, Schlegel et al. (2024), provides a detailed explanation of the methodology.

Maintained by Robert W. Schlegel. Last updated 7 months ago.

7.3 match 4.30 score 6 scripts

liamrevell

phytools:Phylogenetic Tools for Comparative Biology (and Other Things)

A wide range of methods for phylogenetic analysis - concentrated in phylogenetic comparative biology, but also including numerous techniques for visualizing, analyzing, manipulating, reading or writing, and even inferring phylogenetic trees. Included among the functions in phylogenetic comparative biology are various for ancestral state reconstruction, model-fitting, and simulation of phylogenies and trait data. A broad range of plotting methods for phylogenies and comparative data include (but are not restricted to) methods for mapping trait evolution on trees, for projecting trees into phenotype space or a onto a geographic map, and for visualizing correlated speciation between trees. Lastly, numerous functions are designed for reading, writing, analyzing, inferring, simulating, and manipulating phylogenetic trees and comparative data. For instance, there are functions for computing consensus phylogenies from a set, for simulating phylogenetic trees and data under a range of models, for randomly or non-randomly attaching species or clades to a tree, as well as for a wide range of other manipulations and analyses that phylogenetic biologists might find useful in their research.

Maintained by Liam J. Revell. Last updated 27 days ago.

2.3 match 218 stars 13.85 score 4.8k scripts 76 dependents

dreamrs

shinyWidgets:Custom Inputs Widgets for Shiny

Collection of custom input controls and user interface components for 'Shiny' applications. Give your applications a unique and colorful style !

Maintained by Victor Perrier. Last updated 12 days ago.

shiny

1.8 match 849 stars 17.05 score 8.1k scripts 218 dependents

joelcarlson

RImagePalette:Extract the Colors from Images

A pure R implementation of the median cut algorithm. Extracts the dominant colors from an image, and turns them into a scale for use in plots or for fun!

Maintained by Joel Carlson. Last updated 3 years ago.

6.3 match 46 stars 4.84 score 30 scripts

talgalili

gplots:Various R Programming Tools for Plotting Data

Various R programming tools for plotting data, including: - calculating and plotting locally smoothed summary function as ('bandplot', 'wapply'), - enhanced versions of standard plots ('barplot2', 'boxplot2', 'heatmap.2', 'smartlegend'), - manipulating colors ('col2hex', 'colorpanel', 'redgreen', 'greenred', 'bluered', 'redblue', 'rich.colors'), - calculating and plotting two-dimensional data summaries ('ci2d', 'hist2d'), - enhanced regression diagnostic plots ('lmplot2', 'residplot'), - formula-enabled interface to 'stats::lowess' function ('lowess'), - displaying textual data in plots ('textplot', 'sinkplot'), - plotting dots whose size reflects the relative magnitude of the elements ('balloonplot', 'bubbleplot'), - plotting "Venn" diagrams ('venn'), - displaying Open-Office style plots ('ooplot'), - plotting multiple data on same region, with separate axes ('overplot'), - plotting means and confidence intervals ('plotCI', 'plotmeans'), - spacing points in an x-y plot so they don't overlap ('space').

Maintained by Tal Galili. Last updated 5 months ago.

2.0 match 13 stars 15.11 score 13k scripts 482 dependents

thereallda

paintingr:Painting Palettes Generator

Color palettes generated from paintings.

Maintained by Dean Li. Last updated 2 years ago.

10.0 match 2 stars 3.00 score 3 scripts

fkeck

phylosignal:Exploring the Phylogenetic Signal in Continuous Traits

A collection of tools to explore the phylogenetic signal in univariate and multivariate data. The package provides functions to plot traits data against a phylogenetic tree, different measures and tests for the phylogenetic signal, methods to describe where the signal is located and a phylogenetic clustering method.

Maintained by Francois Keck. Last updated 1 years ago.

openblas cpp

4.1 match 16 stars 7.22 score 104 scripts

cdcrabtree

colorr:Color Palettes for EPL, MLB, NBA, NHL, and NFL Teams

Color palettes for EPL, MLB, NBA, NHL, and NFL teams.

Maintained by Charles Crabtree. Last updated 7 years ago.

color-palette colors sports visualization

10.9 match 1 stars 2.70 score 9 scripts

danielvartan

brandr:Brand Identity Management Using brand.yml Standard

A system to facilitate brand identity management using the brand.yml standard, providing functions to consistently access and apply brand colors, typography, and other visual elements across your R projects.

Maintained by Daniel Vartanian. Last updated 6 days ago.

brand-identity brand-management brand-yml branding branding-tools color-palettes color-schemes project-theming r-programming typography visual-assets visual-identity

9.5 match 3.00 score

veroniquerte

leaflet.minicharts:Mini Charts for Interactive Maps

Add and modify small charts on an interactive map created with package 'leaflet'. These charts can be used to represent at same time multiple variables on a single map.

Maintained by Veronique Bachelier. Last updated 4 years ago.

4.0 match 3 stars 7.06 score 214 scripts 5 dependents

bioc

Heatplus:Heatmaps with row and/or column covariates and colored clusters

Display a rectangular heatmap (intensity plot) of a data matrix. By default, both samples (columns) and features (row) of the matrix are sorted according to a hierarchical clustering, and the corresponding dendrogram is plotted. Optionally, panels with additional information about samples and features can be added to the plot.

Maintained by Alexander Ploner. Last updated 5 months ago.

microarray visualization

3.7 match 7.63 score 94 scripts 5 dependents

rcapell

HYPEtools:Tools for Processing and Analyzing Files from the Hydrological Catchment Model HYPE

Work with model files (setup, input, output) from the hydrological catchment model HYPE: Streamlined file import and export, standard evaluation plot routines, diverse post-processing and aggregation routines for hydrological model analysis. The HYPEtools package is also archived at <doi:10.5281/zenodo.7627955> and can be cited in publications with Brendel et al. (2024) <doi:10.1016/j.envsoft.2024.106094>.

Maintained by Rene Capell. Last updated 26 days ago.

3.7 match 17 stars 7.54 score 26 scripts

iheid-library

iheiddown:For Writing Geneva Graduate Institute Documents

A set of tools for writing documents according to Geneva Graduate Institute conventions and regulations. The most common use is for writing and compiling theses or thesis chapters, as drafts or for examination with correct preamble formatting. However, the package also offers users to create HTML presentation slides with 'xaringan', complete problem sets, format posters, and, for course instructors, prepare a syllabus. The package includes additional functions for institutional color palettes, an institutional 'ggplot' theme, a function for counting manuscript words, and a bibliographical analysis toolkit.

Maintained by James Hollway. Last updated 2 years ago.

rmarkdown thesis university

4.5 match 11 stars 6.14 score 5 scripts

djnavarro

jasmines:Generative Art

It doesn't do much, really.

Maintained by Danielle Navarro. Last updated 4 years ago.

5.6 match 112 stars 4.90 score 141 scripts

smin95

smplot2:Create Standalone and Composite Plots in 'ggplot2' for Publications

Provides functions for creating and annotating a composite plot in 'ggplot2'. Offers background themes and shortcut plotting functions that produce figures that are appropriate for the format of scientific journals. Some methods are described in Min and Zhou (2021) <doi:10.3389/fgene.2021.802894>.

Maintained by Seung Hyun Min. Last updated 1 months ago.

easy-to-use ggplot2 scientific-visualization visualization

3.9 match 24 stars 7.08 score 288 scripts 1 dependents

bioc

mixOmics:Omics Data Integration Project

Multivariate methods are well suited to large omics data sets where the number of variables (e.g. genes, proteins, metabolites) is much larger than the number of samples (patients, cells, mice). They have the appealing properties of reducing the dimension of the data by using instrumental variables (components), which are defined as combinations of all variables. Those components are then used to produce useful graphical outputs that enable better understanding of the relationships and correlation structures between the different data sets that are integrated. mixOmics offers a wide range of multivariate methods for the exploration and integration of biological datasets with a particular focus on variable selection. The package proposes several sparse multivariate models we have developed to identify the key variables that are highly correlated, and/or explain the biological outcome of interest. The data that can be analysed with mixOmics may come from high throughput sequencing technologies, such as omics data (transcriptomics, metabolomics, proteomics, metagenomics etc) but also beyond the realm of omics (e.g. spectral imaging). The methods implemented in mixOmics can also handle missing values without having to delete entire rows with missing data. A non exhaustive list of methods include variants of generalised Canonical Correlation Analysis, sparse Partial Least Squares and sparse Discriminant Analysis. Recently we implemented integrative methods to combine multiple data sets: N-integration with variants of Generalised Canonical Correlation Analysis and P-integration with variants of multi-group Partial Least Squares.

Maintained by Eva Hamrud. Last updated 4 days ago.

immunooncology microarray sequencing metabolomics metagenomics proteomics geneprediction multiplecomparison classification regression bioconductor genomics genomics-data genomics-visualization multivariate-analysis multivariate-statistics omics r-pkg r-project

2.0 match 182 stars 13.71 score 1.3k scripts 22 dependents

psalguerog

RColorConesa:Conesa Colors Palette

Provides a collection of palettes designed to integrate with 'ggplot', reflecting the color schemes associated with 'ConesaLab'.

Maintained by Pedro Salguero Garcia. Last updated 2 years ago.

11.5 match 2.38 score 48 scripts

flr

ggplotFL:Using ggplot2 in FLR

Using ggplot2 for FLR. Provides (1) overloaded ggplot methods for various FLR classes, (2) ggplot-based versions of standard plots in the FLCore package, and (3) new geoms for using FLR objects.

Maintained by Iago Mosqueira. Last updated 2 months ago.

visualization ggplot2 fisheries flr

3.6 match 4 stars 7.60 score 458 scripts 12 dependents

jacob-long

jtools:Analysis and Presentation of Social Scientific Data

This is a collection of tools for more efficiently understanding and sharing the results of (primarily) regression analyses. There are also a number of miscellaneous functions for statistical and programming purposes. Support for models produced by the survey and lme4 packages are points of emphasis.

Maintained by Jacob A. Long. Last updated 6 months ago.

social-sciences

1.9 match 167 stars 14.48 score 4.0k scripts 14 dependents

ipeadata-lab

ipeaplot:Add Ipea Editorial Standards to 'ggplot2' Graphics

Convenient functions to create 'ggplot2' graphics following the editorial guidelines of the Institute for Applied Economic Research (Ipea).

Maintained by Pedro Ferreira. Last updated 18 days ago.

4.1 match 3 stars 6.49 score 17 scripts

r-forge

car:Companion to Applied Regression

Functions to Accompany J. Fox and S. Weisberg, An R Companion to Applied Regression, Third Edition, Sage, 2019.

Maintained by John Fox. Last updated 5 months ago.

1.8 match 15.29 score 43k scripts 901 dependents

mhahsler

seriation:Infrastructure for Ordering Objects Using Seriation

Infrastructure for ordering objects with an implementation of several seriation/sequencing/ordination techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT). Hahsler et al (2008) <doi:10.18637/jss.v025.i03>.

Maintained by Michael Hahsler. Last updated 3 months ago.

combinatorial-optimization ordination seriation fortran

1.9 match 77 stars 14.07 score 640 scripts 79 dependents

riatelab

cartography:Thematic Cartography

Create and integrate maps in your R workflow. This package helps to design cartographic representations such as proportional symbols, choropleth, typology, flows or discontinuities maps. It also offers several features that improve the graphic presentation of maps, for instance, map palettes, layout elements (scale, north arrow, title...), labels or legends. See Giraud and Lambert (2017) <doi:10.1007/978-3-319-57336-6_13>.

Maintained by Timothée Giraud. Last updated 2 years ago.

cartography map thematic-maps cpp

2.5 match 399 stars 10.47 score 460 scripts 2 dependents

thiyangt

nic:Nature Inspired Colours

Color palettes based on nature inspired colours in "Sri Lanka".

Maintained by Thiyanga S. Talagala. Last updated 2 years ago.

6.6 match 2 stars 4.00 score 10 scripts

luca-scr

GA:Genetic Algorithms

Flexible general-purpose toolbox implementing genetic algorithms (GAs) for stochastic optimisation. Binary, real-valued, and permutation representations are available to optimize a fitness function, i.e. a function provided by users depending on their objective function. Several genetic operators are available and can be combined to explore the best settings for the current task. Furthermore, users can define new genetic operators and easily evaluate their performances. Local search using general-purpose optimisation algorithms can be applied stochastically to exploit interesting regions. GAs can be run sequentially or in parallel, using an explicit master-slave parallelisation or a coarse-grain islands approach. For more details see Scrucca (2013) <doi:10.18637/jss.v053.i04> and Scrucca (2017) <doi:10.32614/RJ-2017-008>.

Maintained by Luca Scrucca. Last updated 6 months ago.

genetic-algorithm optimisation cpp

2.3 match 93 stars 11.58 score 624 scripts 52 dependents

nepem-ufsc

pliman:Tools for Plant Image Analysis

Tools for both single and batch image manipulation and analysis (Olivoto, 2022 <doi:10.1111/2041-210X.13803>) and phytopathometry (Olivoto et al., 2022 <doi:10.1007/S40858-021-00487-5>). The tools can be used for the quantification of leaf area, object counting, extraction of image indexes, shape measurement, object landmark identification, and Elliptical Fourier Analysis of object outlines (Claude (2008) <doi:10.1007/978-0-387-77789-4>). The package also provides a comprehensive pipeline for generating shapefiles with complex layouts and supports high-throughput phenotyping of RGB, multispectral, and hyperspectral orthomosaics. This functionality facilitates field phenotyping using UAV- or satellite-based imagery.

Maintained by Tiago Olivoto. Last updated 2 days ago.

openblas fftw3 cpp openmp

3.9 match 10 stars 6.68 score 476 scripts

erictleung

jwst:JWST Color Palette for R

An R color palette inspired by the images from the JWST.

Maintained by Eric Leung. Last updated 3 years ago.

color-palette jwst space

15.2 match 1.70 score 2 scripts

rjake

simplecolors:Access Color Names Using a Standardized Nomenclature

A curated set of colors that are called using a standardized syntax: saturation + hue + lightness. For example, "brightblue4" and "mutedred2". Functions exists to return individual colors by name or to build palettes across or within hues. Most functions allow you to visualize the palettes in addition to returning the desired hex codes.

Maintained by Jake Riley. Last updated 2 years ago.

4.4 match 14 stars 5.78 score 87 scripts

jianhong

colorBlindness:Safe Color Set for Color Blindness

Provide the safe color set for color blindness, the simulator of protanopia, deuteranopia. The color sets are collected from: Wong, B. (2011) <doi:10.1038/nmeth.1618>, and <http://mkweb.bcgsc.ca/biovis2012/>. The simulations of the appearance of the colors to color-deficient viewers were based on algorithms in Vienot, F., Brettel, H. and Mollon, J.D. (1999) <doi:10.1002/(SICI)1520-6378(199908)24:4%3C243::AID-COL5%3E3.0.CO;2-3>. The cvdPlot() function to generate 'ggplot' grobs of simulations were modified from <https://github.com/clauswilke/colorblindr>.

Maintained by Jianhong Ou. Last updated 4 years ago.

visualization

6.0 match 4.20 score 315 scripts

wa-department-of-agriculture

washi:Washington Soil Health Initiative Branding

Create plots and tables in a consistent style with WaSHI (Washington Soil Health Initiative) branding. Use 'washi' to easily style your 'ggplot2' plots and 'flextable' tables.

Maintained by Jadey Ryan. Last updated 1 years ago.

7.9 match 3 stars 3.18 score 2 scripts

business-science

tidyquant:Tidy Quantitative Financial Analysis

Bringing business and financial analysis to the 'tidyverse'. The 'tidyquant' package provides a convenient wrapper to various 'xts', 'zoo', 'quantmod', 'TTR' and 'PerformanceAnalytics' package functions and returns the objects in the tidy 'tibble' format. The main advantage is being able to use quantitative functions with the 'tidyverse' functions including 'purrr', 'dplyr', 'tidyr', 'ggplot2', 'lubridate', etc. See the 'tidyquant' website for more information, documentation and examples.

Maintained by Matt Dancho. Last updated 1 months ago.

dplyr financial-analysis financial-data financial-statements multiple-stocks performance-analysis performanceanalytics quantmod stock stock-exchanges stock-indexes stock-lists stock-performance stock-prices stock-symbol tidyverse time-series timeseries xts

1.9 match 872 stars 13.34 score 5.2k scripts

coursekata

coursekata:Packages and Functions for 'CourseKata' Courses

Easily install and load all packages and functions used in 'CourseKata' courses. Aid teaching with helper functions and augment generic functions to provide cohesion between the network of packages. Learn more about 'CourseKata' at <https://coursekata.org>.

Maintained by Adam Blake. Last updated 3 months ago.

5.3 match 4 stars 4.68 score 60 scripts

spatialnous

alcyon:Spatial Network Analysis

Interface package for 'sala', the spatial network analysis library from the 'depthmapX' software application. The R parts of the code are based on the 'rdepthmap' package. Allows for the analysis of urban and building-scale networks and provides metrics and methods usually found within the Space Syntax domain. Methods in this package are described by K. Al-Sayed, A. Turner, B. Hillier, S. Iida and A. Penn (2014) "Space Syntax methodology", and also by A. Turner (2004) <https://discovery.ucl.ac.uk/id/eprint/2651> "Depthmap 4: a researcher's handbook".

Maintained by Petros Koutsolampros. Last updated 2 months ago.

cpp openmp

3.9 match 2 stars 6.34 score 13 scripts

rogiersbart

spectralscale:A consistent set of Spectral-based palettes and scales

This package provides a consistent set of palettes, all based on the ColorBrewer Spectral palette, as approximated in hcl space by the recent colorspace package. The different palettes and corresponding ggplot2 scales should be able to handle most use cases for continuous and discrete scales, including sequential, diverging and qualitative palettes, with single or double hue gradients. Moreover, they all have been checked with respect to the different types of CVD, and should behave reasonably well for most people.

Maintained by Bart Rogiers. Last updated 5 years ago.

8.2 match 3.00 score 1 scripts

cbielow

PTXQC:Quality Report Generation for MaxQuant and mzTab Results

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool). Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format. Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) <doi:10.1021/acs.jproteome.5b00780>.

Maintained by Chris Bielow. Last updated 1 years ago.

drag-and-drop hacktoberfest heatmap match-between-runs maxquant metric mztab openms proteomics quality-control quality-metrics report

2.6 match 42 stars 9.35 score 105 scripts 1 dependents

larmarange

ggstats:Extension to 'ggplot2' for Plotting Stats

Provides new statistics, new geometries and new positions for 'ggplot2' and a suite of functions to facilitate the creation of statistical plots.

Maintained by Joseph Larmarange. Last updated 6 days ago.

1.9 match 37 stars 13.08 score 190 scripts 156 dependents