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nflverse

nflreadr:Download 'nflverse' Data

A minimal package for downloading data from 'GitHub' repositories of the 'nflverse' project.

Maintained by Tan Ho. Last updated 4 months ago.

nflnflfastrnflversesports-data

9.2 match 66 stars 12.46 score 476 scripts 10 dependents

junlingm

ABM:Agent Based Model Simulation Framework

A high-performance, flexible and extensible framework to develop continuous-time agent based models. Its high performance allows it to simulate millions of agents efficiently. Agents are defined by their states (arbitrary R lists). The events are handled in chronological order. This avoids the multi-event interaction problem in a time step of discrete-time simulations, and gives precise outcomes. The states are modified by provided or user-defined events. The framework provides a flexible and customizable implementation of state transitions (either spontaneous or caused by agent interactions), making the framework suitable to apply to epidemiology and ecology, e.g., to model life history stages, competition and cooperation, and disease and information spread. The agent interactions are flexible and extensible. The framework provides random mixing and network interactions, and supports multi-level mixing patterns. It can be easily extended to other interactions such as inter- and intra-households (or workplaces and schools) by subclassing an R6 class. It can be used to study the effect of age-specific, group-specific, and contact- specific intervention strategies, and complex interactions between individual behavior and population dynamics. This modeling concept can also be used in business, economical and political models. As a generic event based framework, it can be applied to many other fields. More information about the implementation and examples can be found at <https://github.com/junlingm/ABM>.

Maintained by Junling Ma. Last updated 2 months ago.

cpp

4.9 match 28 stars 4.92 score 12 scripts

bodkan

slendr:A Simulation Framework for Spatiotemporal Population Genetics

A framework for simulating spatially explicit genomic data which leverages real cartographic information for programmatic and visual encoding of spatiotemporal population dynamics on real geographic landscapes. Population genetic models are then automatically executed by the 'SLiM' software by Haller et al. (2019) <doi:10.1093/molbev/msy228> behind the scenes, using a custom built-in simulation 'SLiM' script. Additionally, fully abstract spatial models not tied to a specific geographic location are supported, and users can also simulate data from standard, non-spatial, random-mating models. These can be simulated either with the 'SLiM' built-in back-end script, or using an efficient coalescent population genetics simulator 'msprime' by Baumdicker et al. (2022) <doi:10.1093/genetics/iyab229> with a custom-built 'Python' script bundled with the R package. Simulated genomic data is saved in a tree-sequence format and can be loaded, manipulated, and summarised using tree-sequence functionality via an R interface to the 'Python' module 'tskit' by Kelleher et al. (2019) <doi:10.1038/s41588-019-0483-y>. Complete model configuration, simulation and analysis pipelines can be therefore constructed without a need to leave the R environment, eliminating friction between disparate tools for population genetic simulations and data analysis.

Maintained by Martin Petr. Last updated 12 days ago.

popgenpopulation-geneticssimulationsspatial-statistics

2.6 match 56 stars 9.15 score 88 scripts

mrc-ide

rrq:Simple Redis Queue

Simple Redis queue in R.

Maintained by Rich FitzJohn. Last updated 4 months ago.

clusterinfrastructure

2.6 match 24 stars 7.40 score 14 scripts 3 dependents

mrc-ide

hipercow:High Performance Computing

Set up cluster environments and jobs. Moo.

Maintained by Rich FitzJohn. Last updated 11 days ago.

1.3 match 1 stars 6.53 score 45 scripts 1 dependents

cran

FAwR:Functions and Datasets for "Forest Analytics with R"

Provides functions and datasets from the book "Forest Analytics with R".

Maintained by Andrew Robinson. Last updated 4 years ago.

3.6 match 2 stars 1.30 score