Showing 73 of total 73 results (show query)
cran
queueing:Analysis of Queueing Networks and Models
It provides versatile tools for analysis of birth and death based Markovian Queueing Models and Single and Multiclass Product-Form Queueing Networks. It implements M/M/1, M/M/c, M/M/Infinite, M/M/1/K, M/M/c/K, M/M/c/c, M/M/1/K/K, M/M/c/K/K, M/M/c/K/m, M/M/Infinite/K/K, Multiple Channel Open Jackson Networks, Multiple Channel Closed Jackson Networks, Single Channel Multiple Class Open Networks, Single Channel Multiple Class Closed Networks and Single Channel Multiple Class Mixed Networks. Also it provides a B-Erlang, C-Erlang and Engset calculators. This work is dedicated to the memory of D. Sixto Rios Insua.
Maintained by Pedro Canadilla. Last updated 5 years ago.
518.1 match 2.58 score 376 scripts
djnavarro
queue:Simple Multi-Threaded Task Queuing
Implements a simple multi-threaded task queue using R6 classes.
Maintained by Danielle Navarro. Last updated 2 years ago.
66.1 match 6 stars 3.97 score 31 scripts
anthonyebert
queuecomputer:Computationally Efficient Queue Simulation
Implementation of a computationally efficient method for simulating queues with arbitrary arrival and service times. Please see Ebert, Wu, Mengersen & Ruggeri (2020, <doi:10.18637/jss.v095.i05>) for further details.
Maintained by Anthony Ebert. Last updated 6 months ago.
38.9 match 36 stars 6.30 score 55 scripts
r-lib
liteq:Lightweight Portable Message Queue Using 'SQLite'
Temporary and permanent message queues for R. Built on top of 'SQLite' databases. 'SQLite' provides locking, and makes it possible to detect crashed consumers. Crashed jobs can be automatically marked as "failed", or put in the queue again, potentially a limited number of times.
Maintained by Gábor Csárdi. Last updated 4 months ago.
27.2 match 57 stars 5.91 score 19 scripts 1 dependents
randy3k
collections:High Performance Container Data Types
Provides high performance container data types such as queues, stacks, deques, dicts and ordered dicts. Benchmarks <https://randy3k.github.io/collections/articles/benchmark.html> have shown that these containers are asymptotically more efficient than those offered by other packages.
Maintained by Randy Lai. Last updated 2 years ago.
14.7 match 104 stars 9.14 score 215 scripts 27 dependents
mrc-ide
rrq:Simple Redis Queue
Simple Redis queue in R.
Maintained by Rich FitzJohn. Last updated 4 months ago.
17.7 match 24 stars 7.40 score 14 scripts 3 dependents
r-simmer
simmer:Discrete-Event Simulation for R
A process-oriented and trajectory-based Discrete-Event Simulation (DES) package for R. It is designed as a generic yet powerful framework. The architecture encloses a robust and fast simulation core written in 'C++' with automatic monitoring capabilities. It provides a rich and flexible R API that revolves around the concept of trajectory, a common path in the simulation model for entities of the same type. Documentation about 'simmer' is provided by several vignettes included in this package, via the paper by Ucar, Smeets & Azcorra (2019, <doi:10.18637/jss.v090.i02>), and the paper by Ucar, Hernández, Serrano & Azcorra (2018, <doi:10.1109/MCOM.2018.1700960>); see 'citation("simmer")' for details.
Maintained by Iñaki Ucar. Last updated 6 months ago.
9.3 match 223 stars 11.47 score 440 scripts 6 dependents
azure
AzureQstor:Interface to 'Azure Queue Storage'
An interface to 'Azure Queue Storage'. This is a cloud service for storing large numbers of messages, for example from automated sensors, that can be accessed remotely via authenticated calls using HTTP or HTTPS. Queue storage is often used to create a backlog of work to process asynchronously. Part of the 'AzureR' family of packages.
Maintained by Hong Ooi. Last updated 4 years ago.
azure-sdk-razure-storageazure-storage-queue
22.5 match 3 stars 4.18 score 8 scripts
fellstat
ipc:Tools for Message Passing Between Processes
Provides tools for passing messages between R processes. Shiny examples are provided showing how to perform useful tasks such as: updating reactive values from within a future, progress bars for long running async tasks, and interrupting async tasks based on user input.
Maintained by Ian E. Fellows. Last updated 2 years ago.
12.2 match 56 stars 6.50 score 38 scripts 1 dependents
bupaverse
edeaR:Exploratory and Descriptive Event-Based Data Analysis
Exploratory and descriptive analysis of event based data. Provides methods for describing and selecting process data, and for preparing event log data for process mining. Builds on the S3-class for event logs implemented in the package 'bupaR'.
Maintained by Gert Janssenswillen. Last updated 4 months ago.
6.4 match 12 stars 9.17 score 149 scripts 8 dependents
nhs-r-community
NHSRwaitinglist:R-package to implement a waiting list management approach
R-package to implement the waiting list management approach described in this paper by Fong et al 2022.
Maintained by Tom Smith. Last updated 4 months ago.
8.7 match 16 stars 6.06 score 17 scripts
cmmr
jobqueue:Run Interruptible Code Asynchronously
Takes an R expression and returns a Job object with a $stop() method which can be called to terminate the background job. Also provides timeouts and other mechanisms for automatically terminating a background job. The result of the expression is available synchronously via $result or asynchronously with callbacks or through the 'promises' package framework.
Maintained by Daniel P. Smith. Last updated 17 days ago.
7.8 match 2 stars 5.89 score 12 scripts
r-dbi
RPostgres:C++ Interface to PostgreSQL
Fully DBI-compliant C++-backed interface to PostgreSQL <https://www.postgresql.org/>, an open-source relational database.
Maintained by Kirill Müller. Last updated 20 days ago.
3.0 match 338 stars 14.78 score 1.6k scripts 31 dependents
wlandau
crew:A Distributed Worker Launcher Framework
In computationally demanding analysis projects, statisticians and data scientists asynchronously deploy long-running tasks to distributed systems, ranging from traditional clusters to cloud services. The 'NNG'-powered 'mirai' R package by Gao (2023) <doi:10.5281/zenodo.7912722> is a sleek and sophisticated scheduler that efficiently processes these intense workloads. The 'crew' package extends 'mirai' with a unifying interface for third-party worker launchers. Inspiration also comes from packages. 'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>, 'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>, 'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>), and 'batchtools' by Lang, Bischel, and Surmann (2017) <doi:10.21105/joss.00135>.
Maintained by William Michael Landau. Last updated 2 days ago.
3.9 match 136 stars 11.19 score 243 scripts 2 dependents
leef-uzh
LEEF:Data Package Containing Only Data and Data Information
Setup package for the LEEF pipeline which loads / installs all necessary packages and functions to run the pipeline.
Maintained by Rainer M. Krug. Last updated 3 years ago.
data-analysisdata-processingleef
13.8 match 2.95 score
yukai-yang
R6DS:R6 Reference Class Based Data Structures
Provides reference classes implementing some useful data structures. The package implements these data structures by using the reference class R6. Therefore, the classes of the data structures are also reference classes which means that their instances are passed by reference. The implemented data structures include stack, queue, double-ended queue, doubly linked list, set, dictionary and binary search tree. See for example <https://en.wikipedia.org/wiki/Data_structure> for more information about the data structures.
Maintained by Yukai Yang. Last updated 2 years ago.
binary-search-treesdata-structuresdequedictionarydoubly-linked-listfunctional-programmingmapqueuereference-classstacktraversal
11.8 match 5 stars 3.40 score 5 scriptscran
datarobot:'DataRobot' Predictive Modeling API
For working with the 'DataRobot' predictive modeling platform's API <https://www.datarobot.com/>.
Maintained by AJ Alon. Last updated 1 years ago.
11.2 match 2 stars 3.48 scorer-lib
fastmap:Fast Data Structures
Fast implementation of data structures, including a key-value store, stack, and queue. Environments are commonly used as key-value stores in R, but every time a new key is used, it is added to R's global symbol table, causing a small amount of memory leakage. This can be problematic in cases where many different keys are used. Fastmap avoids this memory leak issue by implementing the map using data structures in C++.
Maintained by Winston Chang. Last updated 10 months ago.
2.8 match 134 stars 14.04 score 102 scripts 5.5k dependents
ralmond
Proc4:Four Process Assessment Database and Dispatcher
Utilities for working with messages in the four four process architecture as json objects.
Maintained by Russell Almond. Last updated 1 years ago.
assessment-scoringevidence-centered-designmongodb-database
9.7 match 3.95 score 2 dependents
fmichonneau
foghorn:Summarize CRAN Check Results in the Terminal
The CRAN check results and where your package stands in the CRAN submission queue in your R terminal.
Maintained by Francois Michonneau. Last updated 9 months ago.
4.2 match 58 stars 8.76 score 21 scriptscran
vcd:Visualizing Categorical Data
Visualization techniques, data sets, summary and inference procedures aimed particularly at categorical data. Special emphasis is given to highly extensible grid graphics. The package was package was originally inspired by the book "Visualizing Categorical Data" by Michael Friendly and is now the main support package for a new book, "Discrete Data Analysis with R" by Michael Friendly and David Meyer (2015).
Maintained by David Meyer. Last updated 6 months ago.
4.5 match 5 stars 8.19 score 87 dependents
mschubert
clustermq:Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM, PBS/Torque)
Evaluate arbitrary function calls using workers on HPC schedulers in single line of code. All processing is done on the network without accessing the file system. Remote schedulers are supported via SSH.
Maintained by Michael Schubert. Last updated 25 days ago.
clusterhigh-performance-computinglsfsgeslurmsshzeromq3cpp
3.6 match 149 stars 10.23 score 253 scripts
datawookie
liqueueR:Implements Queue, PriorityQueue and Stack Classes
Provides three classes: Queue, PriorityQueue and Stack. Queue is just a "plain vanilla" FIFO queue; PriorityQueue orders items according to priority. Stack implements LIFO.
Maintained by Andrew Collier. Last updated 8 years ago.
9.3 match 5 stars 3.88 score 4 scripts 1 dependents
jpquast
protti:Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools
Useful functions and workflows for proteomics quality control and data analysis of both limited proteolysis-coupled mass spectrometry (LiP-MS) (Feng et. al. (2014) <doi:10.1038/nbt.2999>) and regular bottom-up proteomics experiments. Data generated with search tools such as 'Spectronaut', 'MaxQuant' and 'Proteome Discover' can be easily used due to flexibility of functions.
Maintained by Jan-Philipp Quast. Last updated 5 months ago.
data-analysislip-msmass-spectrometryomicsproteinproteomicssystems-biology
3.7 match 61 stars 8.58 score 83 scripts
charlie86
spotifyr:R Wrapper for the 'Spotify' Web API
An R wrapper for pulling data from the 'Spotify' Web API <https://developer.spotify.com/documentation/web-api/> in bulk, or post items on a 'Spotify' user's playlist.
Maintained by Daniel Antal. Last updated 5 months ago.
music-information-retrievalspotify
3.5 match 374 stars 8.54 score 936 scripts
rpahl
container:Extending Base 'R' Lists
Extends the functionality of base 'R' lists and provides specialized data structures 'deque', 'set', 'dict', and 'dict.table', the latter to extend the 'data.table' package.
Maintained by Roman Pahl. Last updated 2 months ago.
containerdata-structuresdequedictsets
3.9 match 16 stars 7.13 score 140 scripts
ropensci
rgbif:Interface to the Global Biodiversity Information Facility API
A programmatic interface to the Web Service methods provided by the Global Biodiversity Information Facility (GBIF; <https://www.gbif.org/developer/summary>). GBIF is a database of species occurrence records from sources all over the globe. rgbif includes functions for searching for taxonomic names, retrieving information on data providers, getting species occurrence records, getting counts of occurrence records, and using the GBIF tile map service to make rasters summarizing huge amounts of data.
Maintained by John Waller. Last updated 4 days ago.
gbifspecimensapiweb-servicesoccurrencesspeciestaxonomybiodiversitydatalifewatchoscibiospocc
2.0 match 161 stars 13.26 score 2.1k scripts 20 dependents
oneilsh
rstackdeque:Persistent Fast Amortized Stack and Queue Data Structures
Provides fast, persistent (side-effect-free) stack, queue and deque (double-ended-queue) data structures. While deques include a superset of functionality provided by queues, in these implementations queues are more efficient in some specialized situations. See the documentation for rstack, rdeque, and rpqueue for details.
Maintained by Shawn T. ONeil. Last updated 3 years ago.
3.9 match 30 stars 6.57 score 75 scripts 11 dependents
troyhernandez
tinyspotifyr:Tinyverse R Wrapper for the 'Spotify' Web API
An R wrapper for the 'Spotify' Web API <https://developer.spotify.com/web-api/>.
Maintained by Troy Hernandez. Last updated 1 years ago.
5.3 match 13 stars 4.81 score 5 scripts
paws-r
paws.application.integration:'Amazon Web Services' Application Integration Services
Interface to 'Amazon Web Services' application integration services, including 'Simple Queue Service' ('SQS') message queue, 'Simple Notification Service' ('SNS') publish/subscribe messaging, and more <https://aws.amazon.com/>.
Maintained by Dyfan Jones. Last updated 4 days ago.
2.7 match 332 stars 9.06 score 14 dependents
cdueben
cppcontainers:'C++' Standard Template Library Containers
Use 'C++' Standard Template Library containers interactively in R. Includes sets, unordered sets, multisets, unordered multisets, maps, unordered maps, multimaps, unordered multimaps, stacks, queues, priority queues, vectors, deques, forward lists, and lists.
Maintained by Christian Düben. Last updated 2 months ago.
5.0 match 4.70 score 1 scriptspaws-r
paws:Amazon Web Services Software Development Kit
Interface to Amazon Web Services <https://aws.amazon.com>, including storage, database, and compute services, such as 'Simple Storage Service' ('S3'), 'DynamoDB' 'NoSQL' database, and 'Lambda' functions-as-a-service.
Maintained by Dyfan Jones. Last updated 4 days ago.
1.9 match 332 stars 11.25 score 177 scripts 12 dependents
bioc
ProtGenerics:Generic infrastructure for Bioconductor mass spectrometry packages
S4 generic functions and classes needed by Bioconductor proteomics packages.
Maintained by Laurent Gatto. Last updated 2 months ago.
infrastructureproteomicsmassspectrometrybioconductormass-spectrometrymetabolomics
2.3 match 8 stars 9.36 score 4 scripts 188 dependents
spatstat
spatstat.utils:Utility Functions for 'spatstat'
Contains utility functions for the 'spatstat' family of packages which may also be useful for other purposes.
Maintained by Adrian Baddeley. Last updated 2 days ago.
spatial-analysisspatial-dataspatstat
1.8 match 5 stars 11.66 score 134 scripts 248 dependents
pecanproject
PEcAn.remote:PEcAn Model Execution Utilities
This package contains utilities for communicating with and executing code on local and remote hosts. In particular, it has PEcAn-specific utilities for starting ecosystem model runs.
Maintained by Rob Kooper. Last updated 3 days ago.
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
2.0 match 216 stars 9.66 score 13 scripts 32 dependents
urbananalyst
dodgr:Distances on Directed Graphs
Distances on dual-weighted directed graphs using priority-queue shortest paths (Padgham (2019) <doi:10.32866/6945>). Weighted directed graphs have weights from A to B which may differ from those from B to A. Dual-weighted directed graphs have two sets of such weights. A canonical example is a street network to be used for routing in which routes are calculated by weighting distances according to the type of way and mode of transport, yet lengths of routes must be calculated from direct distances.
Maintained by Mark Padgham. Last updated 6 days ago.
distanceopenstreetmaproutershortest-pathsstreet-networkscpp
1.7 match 129 stars 11.53 score 229 scripts 4 dependents
rdpeng
filehash:Simple Key-Value Database
Implements a simple key-value style database where character string keys are associated with data values that are stored on the disk. A simple interface is provided for inserting, retrieving, and deleting data from the database. Utilities are provided that allow 'filehash' databases to be treated much like environments and lists are already used in R. These utilities are provided to encourage interactive and exploratory analysis on large datasets. Three different file formats for representing the database are currently available and new formats can easily be incorporated by third parties for use in the 'filehash' framework.
Maintained by Roger D. Peng. Last updated 2 years ago.
2.3 match 24 stars 8.16 score 78 scripts 11 dependents
vimc
orderly:Lightweight Reproducible Reporting
Order, create and store reports from R. By defining a lightweight interface around the inputs and outputs of an analysis, a lot of the repetitive work for reproducible research can be automated. We define a simple format for organising and describing work that facilitates collaborative reproducible research and acknowledges that all analyses are run multiple times over their lifespans.
Maintained by Rich FitzJohn. Last updated 2 years ago.
1.9 match 117 stars 9.63 score 94 scripts 4 dependentsmrc-ide
queuer:Queue Tasks
Queue tasks to number of backends.
Maintained by Rich FitzJohn. Last updated 2 years ago.
6.4 match 4 stars 2.78 score 4 scriptscmmr
webqueue:Multicore HTTP Server
Distributes HTTP requests among a pool of background R processes. Supports timeouts and interrupts of requests to ensure that CPU cores are utilized effectively.
Maintained by Daniel P. Smith. Last updated 5 days ago.
3.4 match 2 stars 5.15 score
nceas
rt:Interface to the 'Request Tracker' API
Provides a programmatic interface to the 'Request Tracker' (RT) HTTP API <https://rt-wiki.bestpractical.com/wiki/REST>. 'RT' is a popular ticket tracking system.
Maintained by Bryce Mecum. Last updated 4 years ago.
2.0 match 6 stars 7.98 score 664 scripts
gk-crop
simplace:Interface to Use the Modelling Framework 'SIMPLACE'
Interface to interact with the modelling framework 'SIMPLACE' and to parse the results of simulations.
Maintained by Gunther Krauss. Last updated 5 months ago.
3.8 match 1 stars 4.18 score 6 scripts 1 dependents
dipterix
dipsaus:A Dipping Sauce for Data Analysis and Visualizations
Works as an "add-on" to packages like 'shiny', 'future', as well as 'rlang', and provides utility functions. Just like dipping sauce adding flavors to potato chips or pita bread, 'dipsaus' for data analysis and visualizations adds handy functions and enhancements to popular packages. The goal is to provide simple solutions that are frequently asked for online, such as how to synchronize 'shiny' inputs without freezing the app, or how to get memory size on 'Linux' or 'MacOS' system. The enhancements roughly fall into these four categories: 1. 'shiny' input widgets; 2. high-performance computing using the 'future' package; 3. modify R calls and convert among numbers, strings, and other objects. 4. utility functions to get system information such like CPU chip-set, memory limit, etc.
Maintained by Zhengjia Wang. Last updated 6 days ago.
1.9 match 13 stars 7.90 score 85 scripts 3 dependents
bwlewis
doRedis:'Foreach' Parallel Adapter Using the 'Redis' Database
Create and manage fault-tolerant task queues for the 'foreach' package using the 'Redis' key/value database.
Maintained by B. W. Lewis. Last updated 4 years ago.
2.3 match 71 stars 6.56 score 42 scripts
cpanse
protViz:Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
Helps with quality checks, visualizations and analysis of mass spectrometry data, coming from proteomics experiments. The package is developed, tested and used at the Functional Genomics Center Zurich <https://fgcz.ch>. We use this package mainly for prototyping, teaching, and having fun with proteomics data. But it can also be used to do data analysis for small scale data sets.
Maintained by Christian Panse. Last updated 1 years ago.
funmass-spectrometrypeptide-identificationproteomicsquantificationvisualizationcpp
1.8 match 11 stars 7.88 score 72 scripts 2 dependents
slwu89
MicroMoB:Discrete Time Simulation of Mosquito-Borne Pathogen Transmission
Provides a framework based on S3 dispatch for constructing models of mosquito-borne pathogen transmission which are constructed from submodels of various components (i.e. immature and adult mosquitoes, human populations). A consistent mathematical expression for the distribution of bites on hosts means that different models (stochastic, deterministic, etc.) can be coherently incorporated and updated over a discrete time step.
Maintained by Sean L. Wu. Last updated 2 years ago.
3.1 match 4.16 score 32 scripts
ycartes
qmvs:Queueing Model of Visual Search
The queueing model of visual search models the accuracy and response time data in a visual search experiment using queueing models with finite customer population and stopping criteria of completing the service for finite number of customers. It implements the conceptualization of a hybrid model proposed by Moore and Wolfe (2001), in which visual stimuli enter the processing one after the other and then are identified in parallel. This package provides functions that simulate the specified queueing process and calculate the Wasserstein distance between the empirical response times and the model prediction.
Maintained by Yiqi Li. Last updated 4 months ago.
12.6 match 1.00 score 4 scripts
sellorm
cranq:Retrieves CRAN Queue Data
Retrieves CRAN queue data
Maintained by Mark Sellors. Last updated 3 years ago.
7.3 match 1 stars 1.70 score 2 scriptsropensci
SymbiotaR2:Downloading Data from Symbiota2 Portals into R
Download data from Symbiota2 portals using Symbiota's API. Covers the Checklists, Collections, Crowdsource, Exsiccati, Glossary, ImageProcessor, Key, Media, Occurrence, Reference, Taxa, Traits, and UserRoles API families. Each Symbiota2 portal owner can load their own plugins (and modified code), and so this package may not cover every possible API endpoint from a given Symbiota2 instance.
Maintained by Austin Koontz. Last updated 3 years ago.
databaselibraryspecimen-recordssymbiotasymbiota2symbiota2-portal
3.3 match 2 stars 3.30 score 4 scriptsbioc
epivizrServer:WebSocket server infrastructure for epivizr apps and packages
This package provides objects to manage WebSocket connections to epiviz apps. Other epivizr package use this infrastructure.
Maintained by Hector Corrada Bravo. Last updated 5 months ago.
1.8 match 5.95 score 6 scripts 5 dependentscran
webqueue:Multicore HTTP Server
Distributes HTTP requests among a pool of background R processes. Supports timeouts and interrupts of requests to ensure that CPU cores are utilized effectively.
Maintained by Daniel P. Smith. Last updated 3 days ago.
3.4 match 3.00 score
mclements
microsimulation:Discrete Event Simulation in R and C++, with Tools for Cost-Effectiveness Analysis
Discrete event simulation using both R and C++ (Karlsson et al 2016; <doi:10.1109/eScience.2016.7870915>). The C++ code is adapted from the SSIM library <https://www.inf.usi.ch/carzaniga/ssim/>, allowing for event-oriented simulation. The code includes a SummaryReport class for reporting events and costs by age and other covariates. The C++ code is available as a static library for linking to other packages. A priority queue implementation is given in C++ together with an S3 closure and a reference class implementation. Finally, some tools are provided for cost-effectiveness analysis.
Maintained by Mark Clements. Last updated 7 months ago.
cppdiscrete-event-simulationhealth-economicsopenblascpp
2.3 match 38 stars 4.36 score 20 scriptsmrc-ide
hipercow:High Performance Computing
Set up cluster environments and jobs. Moo.
Maintained by Rich FitzJohn. Last updated 12 days ago.
1.5 match 1 stars 6.53 score 45 scripts 1 dependents
bluegreen-labs
appeears:Interface to 'AppEEARS' NASA Web Services
Programmatic interface to the NASA Application for Extracting and Exploring Analysis Ready Samples services (AppEEARS; <https://appeears.earthdatacloud.nasa.gov/>). The package provides easy access to analysis ready earth observation data in R.
Maintained by Koen Hufkens. Last updated 20 days ago.
1.9 match 11 stars 5.22 score 15 scripts
pacificcommunity
condor:Interact with 'Condor' from R via SSH
Interact with 'Condor' from R via SSH connection. Files are first uploaded from user machine to submitter machine, and the job is then submitted from the submitter machine to 'Condor'. Functions are provided to submit, list, and download 'Condor' jobs from R. 'Condor' is an open source high-throughput computing software framework for distributed parallelization of computationally intensive tasks.
Maintained by Arni Magnusson. Last updated 4 months ago.
2.3 match 5 stars 4.26 score 24 scripts
famuvie
breedR:Statistical Methods for Forest Genetic Resources Analysts
Statistical tools to build predictive models for the breeders community. It aims to assess the genetic value of individuals under a number of situations, including spatial autocorrelation, genetic/environment interaction and competition. It is under active development as part of the Trees4Future project, particularly developed having forest genetic trials in mind. But can be used for animals or other situations as well.
Maintained by Facundo Muñoz. Last updated 8 months ago.
1.7 match 33 stars 5.44 score 24 scriptsbioc
MsBackendRawFileReader:Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files
implements a MsBackend for the Spectra package using Thermo Fisher Scientific's NewRawFileReader .Net libraries. The package is generalizing the functionality introduced by the rawrr package Methods defined in this package are supposed to extend the Spectra Bioconductor package.
Maintained by Christian Panse. Last updated 4 months ago.
massspectrometryproteomicsmetabolomics
1.5 match 5 stars 5.94 score 5 scripts
rcannood
qsub:Running Commands Remotely on 'Gridengine' Clusters
Run lapply() calls in parallel by submitting them to 'gridengine' clusters using the 'qsub' command.
Maintained by Robrecht Cannoodt. Last updated 3 years ago.
1.8 match 9 stars 5.07 score 37 scripts
timelyportfolio
parcoords:'Htmlwidget' for 'd3.js' Parallel Coordinates Chart
Create interactive parallel coordinates charts with this 'htmlwidget' wrapper for 'd3.js' <https://github.com/BigFatDog/parcoords-es> {'parallel-coordinates'}.
Maintained by Kenton Russell. Last updated 3 years ago.
1.5 match 77 stars 5.73 score 141 scripts
rformassspectrometry
Chromatograms:Infrastructure for Chromatographic Mass Spectrometry Data
The Chromatograms packages defines a efficient infrastructure for storing and handling of chromatographic mass spectrometry data. It provides different implementations of *backends* to store and represent the data. Such backends can be optimized for small memory footprint or fast data access/processing. A lazy evaluation queue and chunk-wise processing capabilities ensure efficient analysis of also very large data sets.
Maintained by Philippine Louail. Last updated 27 days ago.
infrastructureproteomicsmassspectrometrymetabolomics
2.0 match 1 stars 4.15 score 3 scriptsbioc
CytoPipeline:Automation and visualization of flow cytometry data analysis pipelines
This package provides support for automation and visualization of flow cytometry data analysis pipelines. In the current state, the package focuses on the preprocessing and quality control part. The framework is based on two main S4 classes, i.e. CytoPipeline and CytoProcessingStep. The pipeline steps are linked to corresponding R functions - that are either provided in the CytoPipeline package itself, or exported from a third party package, or coded by the user her/himself. The processing steps need to be specified centrally and explicitly using either a json input file or through step by step creation of a CytoPipeline object with dedicated methods. After having run the pipeline, obtained results at all steps can be retrieved and visualized thanks to file caching (the running facility uses a BiocFileCache implementation). The package provides also specific visualization tools like pipeline workflow summary display, and 1D/2D comparison plots of obtained flowFrames at various steps of the pipeline.
Maintained by Philippe Hauchamps. Last updated 5 months ago.
flowcytometrypreprocessingqualitycontrolworkflowstepimmunooncologysoftwarevisualization
1.2 match 4 stars 6.78 score 18 scripts 2 dependents
phil8192
obAnalytics:Limit Order Book Analytics
Data processing, visualisation and analysis of Limit Order Book event data.
Maintained by Philip Stubbings. Last updated 6 years ago.
bitcoinlimit-order-booktradingvisualisation
1.0 match 152 stars 6.36 score 30 scripts
eddelbuettel
ciw:Watch the CRAN Incoming Directories
Directory reads and summaries are provided for one or more of the subdirectories of the <https://cran.r-project.org/incoming/> directory, and a compact summary object is returned. The package name is a contraption of 'CRAN Incoming Watcher'.
Maintained by Dirk Eddelbuettel. Last updated 3 months ago.
1.9 match 3.40 score 4 scripts
s-fleck
rotor:Log Rotation and Conditional Backups
Conditionally rotate or back-up files based on their size or the date of the last backup; inspired by the 'Linux' utility 'logrotate'.
Maintained by Stefan Fleck. Last updated 2 years ago.
backuplogginglogrotatelogrotation
1.7 match 12 stars 3.78 score 10 scriptscran
IndTestPP:Tests of Independence and Analysis of Dependence Between Point Processes in Time
It provides a general framework to analyse dependence between point processes in time. It includes parametric and non-parametric tests to study independence, and functions for generating and analysing different types of dependence.
Maintained by Ana C. Cebrian. Last updated 5 years ago.
3.4 match 1.00 score
mlr-org
rush:Rapid Parallel and Distributed Computing
Parallel computing with a network of local and remote workers. Fast exchange of results between the workers through a 'Redis' database. Key features include task queues, local caching, and sophisticated error handling.
Maintained by Marc Becker. Last updated 4 months ago.
0.5 match 11 stars 4.94 score 5 scriptscran
DES:Discrete Event Simulation
Discrete event simulation (DES) involves modeling of systems having discrete, i.e. abrupt, state changes. For instance, when a job arrives to a queue, the queue length abruptly increases by 1. This package is an R implementation of the event-oriented approach to DES; see the tutorial in Matloff (2008) <http://heather.cs.ucdavis.edu/~matloff/156/PLN/DESimIntro.pdf>.
Maintained by Norm Matloff. Last updated 8 years ago.
0.8 match 2.70 scoreropensci
jenkins:Simple Jenkins Client for R
Manage jobs and builds on your Jenkins CI server <https://jenkins.io/>. Create and edit projects, schedule builds, manage the queue, download build logs, and much more.
Maintained by Jeroen Ooms. Last updated 6 months ago.
0.5 match 21 stars 3.25 score 17 scripts
imranshakoor
DDPM:Data Sets for Discrete Probability Models
A wide collection of univariate discrete data sets from various applied domains related to distribution theory. The functions allow quick, easy, and efficient access to 100 univariate discrete data sets. The data are related to different applied domains, including medical, reliability analysis, engineering, manufacturing, occupational safety, geological sciences, terrorism, psychology, agriculture, environmental sciences, road traffic accidents, demography, actuarial science, law, and justice. The documentation, along with associated references for further details and uses, is presented.
Maintained by Muhammad Imran. Last updated 2 years ago.
1.6 match 1.00 score
certara-jcraig
Certara.NLME8:Utilities for Certara's Nonlinear Mixed-Effects Modeling Engine
Perform Nonlinear Mixed-Effects (NLME) Modeling using Certara's NLME-Engine. Access the same Maximum Likelihood engines used in the Phoenix platform, including algorithms for parametric methods, individual, and pooled data analysis <https://www.certara.com/app/uploads/2020/06/BR_PhoenixNLME-v4.pdf>. The Quasi-Random Parametric Expectation-Maximization Method (QRPEM) is also supported <https://www.page-meeting.org/default.asp?abstract=2338>. Execution is supported both locally or on remote machines. Remote execution includes support for Linux Sun Grid Engine (SGE), Terascale Open-source Resource and Queue Manager (TORQUE) grids, Linux and Windows multicore, and individual runs.
Maintained by James Craig. Last updated 5 months ago.
0.5 match 2.65 score 3 dependentscran
hpcwld:High Performance Cluster Models Based on Kiefer-Wolfowitz Recursion
Probabilistic models describing the behavior of workload and queue on a High Performance Cluster and computing GRID under FIFO service discipline basing on modified Kiefer-Wolfowitz recursion. Also sample data for inter-arrival times, service times, number of cores per task and waiting times of HPC of Karelian Research Centre are included, measurements took place from 06/03/2009 to 02/30/2011. Functions provided to import/export workload traces in Standard Workload Format (swf). Stability condition of the model may be verified either exactly, or approximately. Stability analysis: see Rumyantsev and Morozov (2017) <doi:10.1007/s10479-015-1917-2>, workload recursion: see Rumyantsev (2014) <doi:10.1109/PDCAT.2014.36>.
Maintained by Alexander Rumyantsev. Last updated 3 years ago.
0.5 match 1 stars 1.00 score 10 scripts