R-universe search: app

thinkr-open

golem:A Framework for Robust Shiny Applications

An opinionated framework for building a production-ready 'Shiny' application. This package contains a series of tools for building a robust 'Shiny' application from start to finish.

Maintained by Colin Fay. Last updated 7 months ago.

golemverse hacktoberfest shiny shiny-apps shiny-r shinyapps

29.4 match 921 stars 14.23 score 167 scripts 62 dependents

bioc

RCy3:Functions to Access and Control Cytoscape

Vizualize, analyze and explore networks using Cytoscape via R. Anything you can do using the graphical user interface of Cytoscape, you can now do with a single RCy3 function.

Maintained by Alex Pico. Last updated 5 months ago.

visualization graphandnetwork thirdpartyclient network

27.4 match 52 stars 13.39 score 628 scripts 15 dependents

rstudio

shiny:Web Application Framework for R

Makes it incredibly easy to build interactive web applications with R. Automatic "reactive" binding between inputs and outputs and extensive prebuilt widgets make it possible to build beautiful, responsive, and powerful applications with minimal effort.

Maintained by Winston Chang. Last updated 13 days ago.

reactive rstudio shiny web-app web-development

14.8 match 5.4k stars 21.28 score 108k scripts 1.8k dependents

daattali

shinyjs:Easily Improve the User Experience of Your Shiny Apps in Seconds

Perform common useful JavaScript operations in Shiny apps that will greatly improve your apps without having to know any JavaScript. Examples include: hiding an element, disabling an input, resetting an input back to its original value, delaying code execution by a few seconds, and many more useful functions for both the end user and the developer. 'shinyjs' can also be used to easily call your own custom JavaScript functions from R.

Maintained by Dean Attali. Last updated 7 months ago.

javascript shiny shiny-r

15.7 match 740 stars 17.28 score 8.9k scripts 400 dependents

r-box

boxr:Interface for the 'Box.com API'

An R interface for the remote file hosting service 'Box' (<https://www.box.com/>). In addition to uploading and downloading files, this package includes functions which mirror base R operations for local files, (e.g. box_load(), box_save(), box_read(), box_setwd(), etc.), as well as 'git' style functions for entire directories (e.g. box_fetch(), box_push()).

Maintained by Ian Lyttle. Last updated 11 months ago.

28.8 match 63 stars 8.65 score 238 scripts

sbg

sevenbridges2:The 'Seven Bridges Platform' API Client

R client and utilities for 'Seven Bridges Platform' API, from 'Cancer Genomics Cloud' to other 'Seven Bridges' supported platforms. API documentation is hosted publicly at <https://docs.sevenbridges.com/docs/the-api>.

Maintained by Marko Trifunovic. Last updated 20 days ago.

api-client bioinformatics cloud sevenbridges

40.1 match 2 stars 5.90 score 4 scripts

rinterface

shinyMobile:Mobile Ready 'shiny' Apps with Standalone Capabilities

Develop outstanding 'shiny' apps for 'iOS' and 'Android' as well as beautiful 'shiny' gadgets. 'shinyMobile' is built on top of the latest 'Framework7' template <https://framework7.io>. Discover 14 new input widgets (sliders, vertical sliders, stepper, grouped action buttons, toggles, picker, smart select, ...), 2 themes (light and dark), 12 new widgets (expandable cards, badges, chips, timelines, gauges, progress bars, ...) combined with the power of server-side notifications such as alerts, modals, toasts, action sheets, sheets (and more) as well as 3 layouts (single, tabs and split).

Maintained by David Granjon. Last updated 2 months ago.

android hacktoberfest2022 pwa shiny shinyapps template

19.4 match 409 stars 11.91 score 1.1k scripts 2 dependents

insightsengineering

teal.modules.general:General Modules for 'teal' Applications

Prebuilt 'shiny' modules containing tools for viewing data, visualizing data, understanding missing and outlier values within your data and performing simple data analysis. This extends 'teal' framework that supports reproducible research and analysis.

Maintained by Dawid Kaledkowski. Last updated 16 days ago.

general-purpose modules nest shiny

23.2 match 12 stars 9.76 score 71 scripts

insightsengineering

teal:Exploratory Web Apps for Analyzing Clinical Trials Data

A 'shiny' based interactive exploration framework for analyzing clinical trials data. 'teal' currently provides a dynamic filtering facility and different data viewers. 'teal' 'shiny' applications are built using standard 'shiny' modules.

Maintained by Dawid Kaledkowski. Last updated 21 days ago.

clinical-trials nest shiny webapp

16.8 match 197 stars 12.68 score 176 scripts 5 dependents

safetygraphics

safetyGraphics:Interactive Graphics for Monitoring Clinical Trial Safety

A framework for evaluation of clinical trial safety. Users can interactively explore their data using the included 'Shiny' application.

Maintained by Jeremy Wildfire. Last updated 2 years ago.

25.7 match 98 stars 8.18 score 111 scripts

tychobra

polished:Authentication and Hosting for 'shiny' Apps

Authentication, user administration, hosting, and additional infrastructure for 'shiny' apps. See <https://polished.tech> for additional documentation and examples.

Maintained by Andy Merlino. Last updated 1 years ago.

23.9 match 233 stars 8.09 score 75 scripts

john-harrold

formods:'Shiny' Modules for General Tasks

'Shiny' apps can often make use of the same key elements, this package provides modules for common tasks (data upload, wrangling data, figure generation and saving the app state), and also a framework for developing. These modules can react and interact as well as generate code to create reproducible analyses.

Maintained by John Harrold. Last updated 6 days ago.

24.1 match 8 stars 7.94 score 100 scripts 1 dependents

didiermurillof

FielDHub:A Shiny App for Design of Experiments in Life Sciences

A shiny design of experiments (DOE) app that aids in the creation of traditional, un-replicated, augmented and partially-replicated designs applied to agriculture, plant breeding, forestry, animal and biological sciences.

Maintained by Didier Murillo. Last updated 8 months ago.

agricultural breeding design doe experimental plantbreeding shiny

19.6 match 48 stars 9.10 score 70 scripts 1 dependents

stan-dev

shinystan:Interactive Visual and Numerical Diagnostics and Posterior Analysis for Bayesian Models

A graphical user interface for interactive Markov chain Monte Carlo (MCMC) diagnostics and plots and tables helpful for analyzing a posterior sample. The interface is powered by the 'Shiny' web application framework from 'RStudio' and works with the output of MCMC programs written in any programming language (and has extended functionality for 'Stan' models fit using the 'rstan' and 'rstanarm' packages).

Maintained by Jonah Gabry. Last updated 3 years ago.

bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics mcmc shiny-apps stan statistical-graphics

13.5 match 200 stars 13.13 score 1.6k scripts 15 dependents

bioc

sevenbridges:Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R

R client and utilities for Seven Bridges platform API, from Cancer Genomics Cloud to other Seven Bridges supported platforms.

Maintained by Phil Webster. Last updated 5 months ago.

software dataimport thirdpartyclient api-client bioconductor bioinformatics cloud common-workflow-language sevenbridges

23.9 match 35 stars 7.40 score 24 scripts

openanalytics

editbl:'DT' Extension for CRUD (Create, Read, Update, Delete) Applications in 'shiny'

The core of this package is a function eDT() which enhances DT::datatable() such that it can be used to interactively modify data in 'shiny'. By the use of generic 'dplyr' methods it supports many types of data storage, with relational databases ('dbplyr') being the main use case.

Maintained by Jasper Schelfhout. Last updated 1 months ago.

26.9 match 23 stars 6.52 score 12 scripts

rstudio

shinytest2:Testing for Shiny Applications

Automated unit testing of Shiny applications through a headless 'Chromium' browser.

Maintained by Barret Schloerke. Last updated 1 months ago.

cpp

13.4 match 108 stars 12.08 score 704 scripts 1 dependents

kwb-r

fakin.path.app:Shiny App to Visualise File Paths

This package contains an R Shiny App that loads file path information from a file and displays the paths in different ways. The aim of the app is to find weaknesses in the folder structure.

Maintained by Hauke Sonnenberg. Last updated 4 years ago.

path-analysis project-fakin shiny-app

48.4 match 3.18 score 1 scripts 1 dependents

bioc

InteractiveComplexHeatmap:Make Interactive Complex Heatmaps

This package can easily make heatmaps which are produced by the ComplexHeatmap package into interactive applications. It provides two types of interactivities: 1. on the interactive graphics device, and 2. on a Shiny app. It also provides functions for integrating the interactive heatmap widgets for more complex Shiny app development.

Maintained by Zuguang Gu. Last updated 5 months ago.

software visualization sequencing interactive-heatmaps

15.6 match 132 stars 9.69 score 128 scripts 4 dependents

flavjack

inti:Tools and Statistical Procedures in Plant Science

The 'inti' package is part of the 'inkaverse' project for developing different procedures and tools used in plant science and experimental designs. The mean aim of the package is to support researchers during the planning of experiments and data collection (tarpuy()), data analysis and graphics (yupana()) , and technical writing. Learn more about the 'inkaverse' project at <https://inkaverse.com/>.

Maintained by Flavio Lozano-Isla. Last updated 1 days ago.

agriculture apps inkaverse lmm plant-breeding plant-science shiny

17.5 match 5 stars 8.27 score 193 scripts

core-bioinformatics

bulkAnalyseR:Interactive Shiny App for Bulk Sequencing Data

Given an expression matrix from a bulk sequencing experiment, pre-processes it and creates a shiny app for interactive data analysis and visualisation. The app contains quality checks, differential expression analysis, volcano and cross plots, enrichment analysis and gene regulatory network inference, and can be customised to contain more panels by the user.

Maintained by Ilias Moutsopoulos. Last updated 1 years ago.

31.9 match 27 stars 4.47 score 11 scripts

cloudyr

googleComputeEngineR:R Interface with Google Compute Engine

Interact with the 'Google Compute Engine' API in R. Lets you create, start and stop instances in the 'Google Cloud'. Support for preconfigured instances, with templates for common R needs.

Maintained by Mark Edmondson. Last updated 1 days ago.

api cloud-computing cloudyr google-cloud googleauthr launching-virtual-machines

14.4 match 152 stars 9.73 score 235 scripts

r-lib

webfakes:Fake Web Apps for HTTP Testing

Create a web app that makes it easier to test web clients without using the internet. It includes a web app framework with path matching, parameters and templates. Can parse various 'HTTP' request bodies. Can send 'JSON' data or files from the disk. Includes a web app that implements the 'httpbin.org' web service.

Maintained by Gábor Csárdi. Last updated 2 months ago.

17.6 match 63 stars 7.37 score 15 scripts 1 dependents

rstudio

sortable:Drag-and-Drop in 'shiny' Apps with 'SortableJS'

Enables drag-and-drop behaviour in Shiny apps, by exposing the functionality of the 'SortableJS' <https://sortablejs.github.io/Sortable/> JavaScript library as an 'htmlwidget'. You can use this in Shiny apps and widgets, 'learnr' tutorials as well as R Markdown. In addition, provides a custom 'learnr' question type - 'question_rank()' - that allows ranking questions with drag-and-drop.

Maintained by Andrie de Vries. Last updated 6 months ago.

htmlwidget

11.1 match 135 stars 11.62 score 368 scripts 13 dependents

a2-ai

ghqc.app:Create QC Checklists in Github Issues

A QC tool with 3 major functions: creation and management of QC log, creation and management of QC record, perform semi-automated QC tasks.

Maintained by Jenna Johnson. Last updated 1 months ago.

37.5 match 3.26 score 4 scripts

skranz

shinyEvents:Shiny wrapper with event handlers instead of reactivity

Shiny is a great package. Yet, for more complex projects, with much dynamic UI, I find it hard to write clean code with its reactivity paradigm. This package wraps shiny into a more traditional programming approach: - event handlers for input changes and button clicks - explicit update functions to change outputs - no explicit server function

Maintained by Sebastian Kranz. Last updated 2 years ago.

shiny

23.6 match 36 stars 4.99 score 26 scripts 7 dependents

rstudio

shinydashboard:Create Dashboards with 'Shiny'

Create dashboards with 'Shiny'. This package provides a theme on top of 'Shiny', making it easy to create attractive dashboards.

Maintained by Winston Chang. Last updated 3 years ago.

admin-dashboard dashboard reactivity rstudio shiny shinydashboard web-app web-development

7.5 match 906 stars 15.30 score 17k scripts 208 dependents

kharchenkolab

pagoda2:Single Cell Analysis and Differential Expression

Analyzing and interactively exploring large-scale single-cell RNA-seq datasets. 'pagoda2' primarily performs normalization and differential gene expression analysis, with an interactive application for exploring single-cell RNA-seq datasets. It performs basic tasks such as cell size normalization, gene variance normalization, and can be used to identify subpopulations and run differential expression within individual samples. 'pagoda2' was written to rapidly process modern large-scale scRNAseq datasets of approximately 1e6 cells. The companion web application allows users to explore which gene expression patterns form the different subpopulations within your data. The package also serves as the primary method for preprocessing data for conos, <https://github.com/kharchenkolab/conos>. This package interacts with data available through the 'p2data' package, which is available in a 'drat' repository. To access this data package, see the instructions at <https://github.com/kharchenkolab/pagoda2>. The size of the 'p2data' package is approximately 6 MB.

Maintained by Evan Biederstedt. Last updated 1 years ago.

scrna-seq single-cell single-cell-rna-seq transcriptomics openblas cpp openmp

14.1 match 222 stars 8.00 score 282 scripts

michelnivard

gptstudio:Use Large Language Models Directly in your Development Environment

Large language models are readily accessible via API. This package lowers the barrier to use the API inside of your development environment. For more on the API, see <https://platform.openai.com/docs/introduction>.

Maintained by James Wade. Last updated 6 days ago.

chatgpt gpt-3 rstudio rstudio-addin

10.4 match 924 stars 10.83 score 43 scripts 1 dependents

azure

Microsoft365R:Interface to the 'Microsoft 365' Suite of Cloud Services

An interface to the 'Microsoft 365' (formerly known as 'Office 365') suite of cloud services, building on the framework supplied by the 'AzureGraph' package. Enables access from R to data stored in 'Teams', 'SharePoint Online' and 'OneDrive', including the ability to list drive folder contents, upload and download files, send messages, and retrieve data lists. Also provides a full-featured 'Outlook' email client, with the ability to send emails and manage emails and mail folders.

Maintained by Hong Ooi. Last updated 15 days ago.

azure-sdk-r microsoft-365 microsoft-graph-api office-365 onedrive onedrive-for-business sharepoint-online

10.0 match 325 stars 11.14 score 88 scripts 7 dependents

rinterface

shinydashboardPlus:Add More 'AdminLTE2' Components to 'shinydashboard'

Extend 'shinydashboard' with 'AdminLTE2' components. 'AdminLTE2' is a free 'Bootstrap 3' dashboard template available at <https://adminlte.io>. Customize boxes, add timelines and a lot more.

Maintained by David Granjon. Last updated 8 months ago.

dashboard hacktoberfest2022 shiny shiny-apps shinydashboard

7.5 match 459 stars 13.79 score 1.1k scripts 28 dependents

bio-statistics

ABACUS:Apps Based Activities for Communicating and Understanding Statistics

A set of Shiny apps for effective communication and understanding in statistics. The current version includes properties of normal distribution, properties of sampling distribution, one-sample z and t tests, two samples independent (unpaired) t test and analysis of variance.

Maintained by Mintu Nath. Last updated 4 years ago.

19.9 match 5.18 score 15 scripts

rinterface

bs4Dash:A 'Bootstrap 4' Version of 'shinydashboard'

Make 'Bootstrap 4' Shiny dashboards. Use the full power of 'AdminLTE3', a dashboard template built on top of 'Bootstrap 4' <https://github.com/ColorlibHQ/AdminLTE>.

Maintained by David Granjon. Last updated 6 months ago.

bootstrap4 dashboard-templates hacktoberfest2022 shiny shiny-apps shinydashboard

7.5 match 442 stars 12.87 score 1.2k scripts 15 dependents

hafen

trelliscopejs:Create Interactive Trelliscope Displays

Trelliscope is a scalable, flexible, interactive approach to visualizing data (Hafen, 2013 <doi:10.1109/LDAV.2013.6675164>). This package provides methods that make it easy to create a Trelliscope display specification for TrelliscopeJS. High-level functions are provided for creating displays from within 'tidyverse' or 'ggplot2' workflows. Low-level functions are also provided for creating new interfaces.

Maintained by Ryan Hafen. Last updated 1 years ago.

visualization

10.1 match 264 stars 9.50 score 1000 scripts 1 dependents

corybrunson

ggalluvial:Alluvial Plots in 'ggplot2'

Alluvial plots use variable-width ribbons and stacked bar plots to represent multi-dimensional or repeated-measures data with categorical or ordinal variables; see Riehmann, Hanfler, and Froehlich (2005) <doi:10.1109/INFVIS.2005.1532152> and Rosvall and Bergstrom (2010) <doi:10.1371/journal.pone.0008694>. Alluvial plots are statistical graphics in the sense of Wilkinson (2006) <doi:10.1007/0-387-28695-0>; they share elements with Sankey diagrams and parallel sets plots but are uniquely determined from the data and a small set of parameters. This package extends Wickham's (2010) <doi:10.1198/jcgs.2009.07098> layered grammar of graphics to generate alluvial plots from tidy data.

Maintained by Jason Cory Brunson. Last updated 7 months ago.

alluvial-diagrams alluvial-plots categorical-data-visualization ggplot2 repeated-measures-data

6.7 match 507 stars 14.14 score 3.0k scripts 21 dependents

openbiox

UCSCXenaShiny:Interactive Analysis of UCSC Xena Data

Provides functions and a Shiny application for downloading, analyzing and visualizing datasets from UCSC Xena (<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.

Maintained by Shixiang Wang. Last updated 4 months ago.

cancer-dataset shiny-apps ucsc-xena

11.0 match 96 stars 8.54 score 35 scripts

bioc

RedeR:Interactive visualization and manipulation of nested networks

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of nested networks. Graph, node, and edge attributes can be configured using either graphical or command-line methods, following igraph syntax rules.

Maintained by Mauro Castro. Last updated 5 months ago.

gui graphandnetwork network networkenrichment networkinference software systemsbiology

13.6 match 6.65 score 107 scripts 7 dependents

paws-r

paws:Amazon Web Services Software Development Kit

Interface to Amazon Web Services <https://aws.amazon.com>, including storage, database, and compute services, such as 'Simple Storage Service' ('S3'), 'DynamoDB' 'NoSQL' database, and 'Lambda' functions-as-a-service.

Maintained by Dyfan Jones. Last updated 3 days ago.

aws aws-sdk

7.8 match 332 stars 11.25 score 177 scripts 12 dependents

pydemull

activAnalyzer:A 'Shiny' App to Analyze Accelerometer-Measured Daily Physical Behavior Data

A tool to analyse 'ActiGraph' accelerometer data and to implement the use of the PROactive Physical Activity in COPD (chronic obstructive pulmonary disease) instruments. Once analysis is completed, the app allows to export results to .csv files and to generate a report of the measurement. All the configured inputs relevant for interpreting the results are recorded in the report. In addition to the existing 'R' packages that are fully integrated with the app, the app uses some functions from the 'actigraph.sleepr' package developed by Petkova (2021) <https://github.com/dipetkov/actigraph.sleepr/>.

Maintained by Pierre-Yves de Müllenheim. Last updated 6 months ago.

accelerometer actigraph app monitor shiny

16.4 match 5 stars 5.18 score 8 scripts

rhenkin

visxhclust:A Shiny App for Visual Exploration of Hierarchical Clustering

A Shiny application and functions for visual exploration of hierarchical clustering with numeric datasets. Allows users to iterative set hyperparameters, select features and evaluate results through various plots and computation of evaluation criteria.

Maintained by Rafael Henkin. Last updated 2 years ago.

clustering data-analysis data-science r-shiny shiny-apps

17.3 match 4 stars 4.86 score 12 scripts

gadenbuie

countdown:A Countdown Timer for HTML Presentations, Documents, and Web Apps

A simple countdown timer for slides and HTML documents written in 'R Markdown' or 'Quarto'. Integrates fully into 'Shiny' apps. Countdown to something amazing.

Maintained by Garrick Aden-Buie. Last updated 11 months ago.

countdown-timer html rmarkdown slides xaringan

10.7 match 152 stars 7.74 score 2.4k scripts

bioc

microbiomeExplorer:Microbiome Exploration App

The MicrobiomeExplorer R package is designed to facilitate the analysis and visualization of marker-gene survey feature data. It allows a user to perform and visualize typical microbiome analytical workflows either through the command line or an interactive Shiny application included with the package. In addition to applying common analytical workflows the application enables automated analysis report generation.

Maintained by Janina Reeder. Last updated 5 months ago.

classification clustering geneticvariability differentialexpression microbiome metagenomics normalization visualization multiplecomparison sequencing software immunooncology

19.6 match 4.00 score 8 scripts

vusaverse

vvdoctor:Statistical Test App with R 'shiny'

Provides a user-friendly R 'shiny' app for performing various statistical tests on datasets. It allows users to upload data in numerous formats and perform statistical analyses. The app dynamically adapts its options based on the selected columns and supports both single and multiple column comparisons. The app's user interface is designed to streamline the process of selecting datasets, columns, and test options, making it easy for users to explore and interpret their data. The underlying functions for statistical tests are well-organized and can be used independently within other R scripts.

Maintained by Tomer Iwan. Last updated 11 months ago.

hypothesis-testing r-r-shiny shiny-apps shiny-r statistical-tests statistics stats

17.8 match 7 stars 4.32 score 3 scripts

radiant-rstats

radiant.data:Data Menu for Radiant: Business Analytics using R and Shiny

The Radiant Data menu includes interfaces for loading, saving, viewing, visualizing, summarizing, transforming, and combining data. It also contains functionality to generate reproducible reports of the analyses conducted in the application.

Maintained by Vincent Nijs. Last updated 5 months ago.

9.1 match 54 stars 8.30 score 146 scripts 6 dependents

ddalthorp

GenEst:Generalized Mortality Estimator

Command-line and 'shiny' GUI implementation of the GenEst models for estimating bird and bat mortality at wind and solar power facilities, following Dalthorp, et al. (2018) <doi:10.3133/tm7A2>.

Maintained by Daniel Dalthorp. Last updated 2 years ago.

cpp

9.7 match 7 stars 7.81 score 55 scripts 2 dependents

rstudio

promises:Abstractions for Promise-Based Asynchronous Programming

Provides fundamental abstractions for doing asynchronous programming in R using promises. Asynchronous programming is useful for allowing a single R process to orchestrate multiple tasks in the background while also attending to something else. Semantics are similar to 'JavaScript' promises, but with a syntax that is idiomatic R.

Maintained by Joe Cheng. Last updated 1 months ago.

cpp

4.4 match 204 stars 17.10 score 688 scripts 2.6k dependents

joachim-gassen

ExPanDaR:Explore Your Data Interactively

Provides a shiny-based front end (the 'ExPanD' app) and a set of functions for exploratory data analysis. Run as a web-based app, 'ExPanD' enables users to assess the robustness of empirical evidence without providing them access to the underlying data. You can export a notebook containing the analysis of 'ExPanD' and/or use the functions of the package to support your exploratory data analysis workflow. Refer to the vignettes of the package for more information on how to use 'ExPanD' and/or the functions of this package.

Maintained by Joachim Gassen. Last updated 4 years ago.

accounting eda exploratory-data-analysis finance open-science replication shiny shiny-apps

9.4 match 156 stars 7.80 score 203 scripts

bioc

iSEE:Interactive SummarizedExperiment Explorer

Create an interactive Shiny-based graphical user interface for exploring data stored in SummarizedExperiment objects, including row- and column-level metadata. The interface supports transmission of selections between plots and tables, code tracking, interactive tours, interactive or programmatic initialization, preservation of app state, and extensibility to new panel types via S4 classes. Special attention is given to single-cell data in a SingleCellExperiment object with visualization of dimensionality reduction results.

Maintained by Kevin Rue-Albrecht. Last updated 10 days ago.

cellbasedassays clustering dimensionreduction featureextraction geneexpression gui immunooncology shinyapps singlecell transcription transcriptomics visualization dimension-reduction feature-extraction gene-expression hacktoberfest human-cell-atlas shiny single-cell

5.6 match 225 stars 12.86 score 380 scripts 9 dependents

bioc

epivizr:R Interface to epiviz web app

This package provides connections to the epiviz web app (http://epiviz.cbcb.umd.edu) for interactive visualization of genomic data. Objects in R/bioc interactive sessions can be displayed in genome browser tracks or plots to be explored by navigation through genomic regions. Fundamental Bioconductor data structures are supported (e.g., GenomicRanges and RangedSummarizedExperiment objects), while providing an easy mechanism to support other data structures (through package epivizrData). Visualizations (using d3.js) can be easily added to the web app as well.

Maintained by Hector Corrada Bravo. Last updated 5 months ago.

visualization infrastructure gui

13.8 match 5.24 score 29 scripts 2 dependents

bioc

scRNAseqApp:A single-cell RNAseq Shiny app-package

The scRNAseqApp is a Shiny app package designed for interactive visualization of single-cell data. It is an enhanced version derived from the ShinyCell, repackaged to accommodate multiple datasets. The app enables users to visualize data containing various types of information simultaneously, facilitating comprehensive analysis. Additionally, it includes a user management system to regulate database accessibility for different users.

Maintained by Jianhong Ou. Last updated 3 days ago.

visualization singlecell rnaseq interactive-visualizations multiple-users shiny-apps single-cell-rna-seq

12.5 match 4 stars 5.76 score 3 scripts

trackerproject

trackeRapp:Interface for the Analysis of Running, Cycling and Swimming Data from GPS-Enabled Tracking Devices

Provides an integrated user interface and workflow for the analysis of running, cycling and swimming data from GPS-enabled tracking devices through the 'trackeR' <https://CRAN.R-project.org/package=trackeR> R package.

Maintained by Ioannis Kosmidis. Last updated 3 years ago.

data-visualization shiny sports-app web-app web-development

15.0 match 32 stars 4.68 score 2 scripts

bioc

RiboCrypt:Interactive visualization in genomics

R Package for interactive visualization and browsing NGS data. It contains a browser for both transcript and genomic coordinate view. In addition a QC and general metaplots are included, among others differential translation plots and gene expression plots. The package is still under development.

Maintained by Michal Swirski. Last updated 5 months ago.

software sequencing riboseq rnaseq

11.6 match 5 stars 6.04 score 22 scripts

surveydown-dev

surveydown:Markdown-Based Surveys Using 'Quarto' and 'shiny'

Generate surveys using markdown and R code chunks. Surveys are composed of two files: a survey.qmd 'Quarto' file defining the survey content (pages, questions, etc), and an app.R file defining a 'shiny' app with global settings (libraries, database configuration, etc.) and server configuration options (e.g., conditional skipping / display, etc.). Survey data collected from respondents is stored in a 'PostgreSQL' database. Features include controls for conditional skip logic (skip to a page based on an answer to a question), conditional display logic (display a question based on an answer to a question), a customizable progress bar, and a wide variety of question types, including multiple choice (single choice and multiple choices), select, text, numeric, multiple choice buttons, text area, and dates. Because the surveys render into a 'shiny' app, designers can also leverage the reactive capabilities of 'shiny' to create dynamic and interactive surveys.

Maintained by John Paul Helveston. Last updated 4 days ago.

markdown postgres postgresql quarto shiny shiny-apps shiny-r supabase survey surveys

8.4 match 96 stars 8.28 score 133 scripts

rstudio

rsconnect:Deploy Docs, Apps, and APIs to 'Posit Connect', 'shinyapps.io', and 'RPubs'

Programmatic deployment interface for 'RPubs', 'shinyapps.io', and 'Posit Connect'. Supported content types include R Markdown documents, Shiny applications, Plumber APIs, plots, and static web content.

Maintained by Aron Atkins. Last updated 16 days ago.

4.7 match 139 stars 14.90 score 3.1k scripts 6 dependents

ctu-bern

presize:Precision Based Sample Size Calculation

Bland (2009) <doi:10.1136/bmj.b3985> recommended to base study sizes on the width of the confidence interval rather the power of a statistical test. The goal of 'presize' is to provide functions for such precision based sample size calculations. For a given sample size, the functions will return the precision (width of the confidence interval), and vice versa.

Maintained by Alan G. Haynes. Last updated 5 months ago.

confidence-intervals precision sample-size-calculation shiny-app

9.5 match 17 stars 7.22 score 36 scripts 1 dependents

occupationmeasurement

occupationMeasurement:Interactively Measure Occupations in Interviews and Beyond

Perform interactive occupation coding during interviews as described in Peycheva, D., Sakshaug, J., Calderwood, L. (2021) <doi:10.2478/jos-2021-0042> and Schierholz, M., Gensicke, M., Tschersich, N., Kreuter, F. (2018) <doi:10.1111/rssa.12297>. Generate suggestions for occupational categories based on free text input, with pre-trained machine learning models in German and a ready-to-use shiny application provided for quick and easy data collection.

Maintained by Jan Simson. Last updated 7 months ago.

13.0 match 3 stars 5.18 score 17 scripts

kwb-r

aquanes.report:Automated Reporting Tool for Water Suppliers

Collects, aggregates and visualises operational and analytical data from water suppliers (including a standardised reporting document).

Maintained by Michael Rustler. Last updated 6 years ago.

automated-reporting data-aggregation data-export data-import data-visualisation pilot-plant project-aquanes shiny-app

16.7 match 4.01 score 23 scripts

rte-antares-rpackage

antaresViz:Antares Visualizations

Visualize results generated by Antares, a powerful open source software developed by RTE to simulate and study electric power systems (more information about 'Antares' here: <https://github.com/AntaresSimulatorTeam/Antares_Simulator>). This package provides functions that create interactive charts to help 'Antares' users visually explore the results of their simulations.

Maintained by Tatiana Vargas. Last updated 2 months ago.

adequacy bilan dygraphs electric energy leaflet linear-programming manipulatewidge monte-carlo-simulation optimization plotly previsionnel renewable-energy rte shiny shiny-apps simulation stochastic-simulation-algorithm tyndp

9.5 match 21 stars 6.83 score 32 scripts

moore-institute-4-plastic-pollution-res

One4All:Validate, Share, and Download Data

Designed to enhance data validation and management processes by employing a set of functions that read a set of rules from a 'CSV' or 'Excel' file and apply them to a dataset. Funded by the National Renewable Energy Laboratory and Possibility Lab, maintained by the Moore Institute for Plastic Pollution Research.

Maintained by Hannah Sherrod. Last updated 8 months ago.

10.1 match 3 stars 6.33 score 15 scripts

fpaskali

LFApp:Shiny Apps for Lateral Flow Assays

Shiny apps for the quantitative analysis of images from lateral flow assays (LFAs). The images are segmented and background corrected and color intensities are extracted. The apps can be used to import and export intensity data and to calibrate LFAs by means of linear, loess, or gam models. The calibration models can further be saved and applied to intensity data from new images for determining concentrations.

Maintained by Filip Paskali. Last updated 10 months ago.

calibration image-processing medical-image-processing shiny

13.3 match 3 stars 4.78 score 2 scripts

azure

AzureGraph:Simple Interface to 'Microsoft Graph'

A simple interface to the 'Microsoft Graph' API <https://learn.microsoft.com/en-us/graph/overview>. 'Graph' is a comprehensive framework for accessing data in various online Microsoft services. This package was originally intended to provide an R interface only to the 'Azure Active Directory' part, with a view to supporting interoperability of R and 'Azure': users, groups, registered apps and service principals. However it has since been expanded into a more general tool for interacting with Graph. Part of the 'AzureR' family of packages.

Maintained by Hong Ooi. Last updated 2 years ago.

azure-active-directory-graph-api azure-sdk-r microsoft-graph-api

6.1 match 32 stars 10.30 score 36 scripts 21 dependents

rstudio

shinytest:Test Shiny Apps

Please see the shinytest to shinytest2 migration guide at <https://rstudio.github.io/shinytest2/articles/z-migration.html>.

Maintained by Winston Chang. Last updated 10 months ago.

6.8 match 225 stars 9.28 score 352 scripts

bioc

spatialHeatmap:spatialHeatmap: Visualizing Spatial Assays in Anatomical Images and Large-Scale Data Extensions

The spatialHeatmap package offers the primary functionality for visualizing cell-, tissue- and organ-specific assay data in spatial anatomical images. Additionally, it provides extended functionalities for large-scale data mining routines and co-visualizing bulk and single-cell data. A description of the project is available here: https://spatialheatmap.org.

Maintained by Jianhai Zhang. Last updated 4 months ago.

spatial visualization microarray sequencing geneexpression datarepresentation network clustering graphandnetwork cellbasedassays atacseq dnaseq tissuemicroarray singlecell cellbiology genetarget

10.0 match 5 stars 6.26 score 12 scripts

rsquaredacademy

olsrr:Tools for Building OLS Regression Models

Tools designed to make it easier for users, particularly beginner/intermediate R users to build ordinary least squares regression models. Includes comprehensive regression output, heteroskedasticity tests, collinearity diagnostics, residual diagnostics, measures of influence, model fit assessment and variable selection procedures.

Maintained by Aravind Hebbali. Last updated 4 months ago.

collinearity-diagnostics linear-models regression stepwise-regression

5.1 match 103 stars 12.19 score 1.4k scripts 4 dependents

oobianom

nextGenShinyApps:Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools

Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts and style sheets are based on 'jQuery' <https://jquery.com/> and 'Bootstrap' <https://getbootstrap.com/>.

Maintained by Obinna Obianom. Last updated 8 months ago.

apps dashboard shiny

10.0 match 10 stars 5.95 score 59 scripts 1 dependents

appsilon

shiny.semantic:Semantic UI Support for Shiny

Creating a great user interface for your Shiny apps can be a hassle, especially if you want to work purely in R and don't want to use, for instance HTML templates. This package adds support for a powerful UI library Fomantic UI - <https://fomantic-ui.com/> (before Semantic). It also supports universal UI input binding that works with various DOM elements.

Maintained by Jakub Nowicki. Last updated 11 months ago.

appsilon fomantic-ui rhinoverse semantic semantic-components semantic-ui shiny

4.5 match 506 stars 13.00 score 586 scripts 3 dependents

dreamrs

shinylogs:Record Everything that Happens in a 'Shiny' Application

Track and record the use of applications and the user's interactions with 'Shiny' inputs. Allows to trace the inputs with which the user interacts, the outputs generated, as well as the errors displayed in the interface.

Maintained by Victor Perrier. Last updated 5 months ago.

logs shiny shinyapps

6.8 match 99 stars 8.71 score 105 scripts 5 dependents

kgjerde

corporaexplorer:A 'Shiny' App for Exploration of Text Collections

Facilitates dynamic exploration of text collections through an intuitive graphical user interface and the power of regular expressions. The package contains 1) a helper function to convert a data frame to a 'corporaexplorerobject' and 2) a 'Shiny' app for fast and flexible exploration of a 'corporaexplorerobject'. The package also includes demo apps with which one can explore Jane Austen's novels and the State of the Union Addresses (data from the 'janeaustenr' and 'sotu' packages respectively).

Maintained by Kristian Lundby Gjerde. Last updated 7 months ago.

corpora corpus shiny text-analysis

10.8 match 65 stars 5.39 score 38 scripts

rspatial

terra:Spatial Data Analysis

Methods for spatial data analysis with vector (points, lines, polygons) and raster (grid) data. Methods for vector data include geometric operations such as intersect and buffer. Raster methods include local, focal, global, zonal and geometric operations. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction, including with satellite remote sensing data. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/> to get started. 'terra' replaces the 'raster' package ('terra' can do more, and it is faster and easier to use).

Maintained by Robert J. Hijmans. Last updated 22 hours ago.

geospatial raster spatial vector onetbb proj gdal geos cpp

3.3 match 559 stars 17.64 score 17k scripts 851 dependents

daattali

shinydisconnect:Show a Nice Message When a 'Shiny' App Disconnects or Errors

A 'Shiny' app can disconnect for a variety of reasons: an unrecoverable error occurred in the app, the server went down, the user lost internet connection, or any other reason that might cause the 'Shiny' app to lose connection to its server. With 'shinydisconnect', you can call disonnectMessage() anywhere in a Shiny app's UI to add a nice message when this happens. Works locally (running Shiny apps within 'RStudio') and on Shiny servers (such as shinyapps.io, 'RStudio Connect', 'Shiny Server Open Source', 'Shiny Server Pro'). See demo online at <https://daattali.com/shiny/shinydisconnect-demo/>.

Maintained by Dean Attali. Last updated 7 months ago.

shiny shiny-r

7.3 match 65 stars 7.80 score 107 scripts 7 dependents

r-spatial

rgee:R Bindings for Calling the 'Earth Engine' API

Earth Engine <https://earthengine.google.com/> client library for R. All of the 'Earth Engine' API classes, modules, and functions are made available. Additional functions implemented include importing (exporting) of Earth Engine spatial objects, extraction of time series, interactive map display, assets management interface, and metadata display. See <https://r-spatial.github.io/rgee/> for further details.

Maintained by Cesar Aybar. Last updated 4 days ago.

earth-engine earthengine google-earth-engine googleearthengine spatial-analysis spatial-data

4.1 match 715 stars 13.77 score 1.9k scripts 3 dependents

trelliscope

trelliscope:Create Interactive Multi-Panel Displays

Trelliscope enables interactive exploration of data frames of visualizations.

Maintained by Ryan Hafen. Last updated 7 months ago.

visualization

8.8 match 29 stars 6.43 score 117 scripts

gadenbuie

epoxy:String Interpolation for Documents, Reports and Apps

Extra strength 'glue' for data-driven templates. String interpolation for 'Shiny' apps or 'R Markdown' and 'knitr'-powered 'Quarto' documents, built on the 'glue' and 'whisker' packages.

Maintained by Garrick Aden-Buie. Last updated 11 months ago.

glue knitr knitr-engine quarto rmarkdown rmd shiny template

6.7 match 218 stars 8.43 score 312 scripts

awkena

qrlabelr:Generate Machine- And Human-Readable Plot Labels for Experiments

A no-frills open-source solution for designing plot labels affixed with QR codes. It features 'EasyQrlabelr', a 'BrAPI-compliant' 'shiny' app that simplifies the process of plot label design for non-R users. It builds on the methods described by Wu 'et al.' (2020) <doi:10.1111/2041-210X.13405>.

Maintained by Alexander Wireko Kena. Last updated 24 days ago.

experiments field-plots labels-generator qr-code shiny-apps

9.2 match 18 stars 5.94 score 16 scripts

thinkr-open

lozen:Management tools for missions

Management tools for missions (internal and external). Includes weekly, GL projects, etc.

Maintained by Sébastien Rochette. Last updated 12 months ago.

experimental

10.1 match 7 stars 5.42 score 14 scripts

curso-r

auth0:Authentication in Shiny with Auth0

Uses Auth0 API (see <https://auth0.com> for more information) to use a simple authentication system. It provides tools to log in and out a shiny application using social networks or a list of e-mails.

Maintained by Julio Trecenti. Last updated 1 years ago.

auth0 authentication hacktoberfest shiny

7.0 match 156 stars 7.79 score 88 scripts

ashbaldry

appler:'Apple App Store' and 'iTunes' Data Extraction

Using 'Apple App Store' <https://www.apple.com/app-store/> web scraping and 'iTunes' API <https://performance-partners.apple.com/search-api> to extract content information, app ratings and reviews.

Maintained by Ashley Baldry. Last updated 2 years ago.

13.2 match 18 stars 4.13 score 15 scripts

adamlilith

fasterRaster:Faster Raster and Spatial Vector Processing Using 'GRASS GIS'

Processing of large-in-memory/large-on disk rasters and spatial vectors using 'GRASS GIS' <https://grass.osgeo.org/>. Most functions in the 'terra' package are recreated. Processing of medium-sized and smaller spatial objects will nearly always be faster using 'terra' or 'sf', but for large-in-memory/large-on-disk objects, 'fasterRaster' may be faster. To use most of the functions, you must have the stand-alone version (not the 'OSGeoW4' installer version) of 'GRASS GIS' 8.0 or higher.

Maintained by Adam B. Smith. Last updated 19 days ago.

aspect distance fragmentation fragmentation-indices gis grass grass-gis raster raster-projection rasterize slope topography vectorization

7.1 match 58 stars 7.69 score 8 scripts

choi-phd

TestDesign:Optimal Test Design Approach to Fixed and Adaptive Test Construction

Uses the optimal test design approach by Birnbaum (1968, ISBN:9781593119348) and van der Linden (2018) <doi:10.1201/9781315117430> to construct fixed, adaptive, and parallel tests. Supports the following mixed-integer programming (MIP) solver packages: 'Rsymphony', 'highs', 'gurobi', 'lpSolve', and 'Rglpk'. The 'gurobi' package is not available from CRAN; see <https://www.gurobi.com/downloads/>.

Maintained by Seung W. Choi. Last updated 6 months ago.

openblas cpp

7.3 match 3 stars 7.34 score 37 scripts 2 dependents

azure

AzureStor:Storage Management in 'Azure'

Manage storage in Microsoft's 'Azure' cloud: <https://azure.microsoft.com/en-us/product-categories/storage/>. On the admin side, 'AzureStor' includes features to create, modify and delete storage accounts. On the client side, it includes an interface to blob storage, file storage, and 'Azure Data Lake Storage Gen2': upload and download files and blobs; list containers and files/blobs; create containers; and so on. Authenticated access to storage is supported, via either a shared access key or a shared access signature (SAS). Part of the 'AzureR' family of packages.

Maintained by Hong Ooi. Last updated 2 years ago.

azure-data-lake azure-sdk-r azure-storage azure-storage-blob azure-storage-file

5.0 match 64 stars 10.72 score 298 scripts 4 dependents

nassimayad87

EpiSimR:A 'Shiny' App to Simulate the Dynamics of Epidemic and Endemic Diseases Spread

The 'EpiSimR' package provides an interactive 'shiny' app based on deterministic compartmental mathematical modeling for simulating and visualizing the dynamics of epidemic and endemic disease spread. It allows users to explore various intervention strategies, including vaccination and isolation, by adjusting key epidemiological parameters. The methodology follows the approach described by Brauer (2008) <doi:10.1007/978-3-540-78911-6_2>. Thanks to 'shiny' package.

Maintained by Nassim AYAD. Last updated 15 days ago.

infectious-disease-models seir-model shiny-apps simulation sir-model

12.6 match 4.18 score 1 scripts

rsquaredacademy

xplorerr:Tools for Interactive Data Exploration

Tools for interactive data exploration built using 'shiny'. Includes apps for descriptive statistics, visualizing probability distributions, inferential statistics, linear regression, logistic regression and RFM analysis.

Maintained by Aravind Hebbali. Last updated 5 months ago.

data exploration shiny-apps statistics visualization cpp

8.0 match 38 stars 6.52 score 11 scripts 6 dependents

wlandau

crew:A Distributed Worker Launcher Framework

In computationally demanding analysis projects, statisticians and data scientists asynchronously deploy long-running tasks to distributed systems, ranging from traditional clusters to cloud services. The 'NNG'-powered 'mirai' R package by Gao (2023) <doi:10.5281/zenodo.7912722> is a sleek and sophisticated scheduler that efficiently processes these intense workloads. The 'crew' package extends 'mirai' with a unifying interface for third-party worker launchers. Inspiration also comes from packages. 'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>, 'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>, 'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>), and 'batchtools' by Lang, Bischel, and Surmann (2017) <doi:10.21105/joss.00135>.

Maintained by William Michael Landau. Last updated 2 days ago.

high-performance-computing

4.7 match 136 stars 11.19 score 243 scripts 2 dependents

ropensci

dataspice:Create Lightweight Schema.org Descriptions of Data

The goal of 'dataspice' is to make it easier for researchers to create basic, lightweight, and concise metadata files for their datasets. These basic files can then be used to make useful information available during analysis, create a helpful dataset "README" webpage, and produce more complex metadata formats to aid dataset discovery. Metadata fields are based on the 'Schema.org' and 'Ecological Metadata Language' standards.

Maintained by Bryce Mecum. Last updated 4 years ago.

data dataset metadata schema-org unconf unconf18

7.0 match 162 stars 7.45 score 25 scripts

jameshwade

gpttools:Extensions and Tools for gptstudio

gpttools is an R package that provides extensions to gptstudio to provide devtools-like functionality using the latest natural language processing (NLP) models. It is designed to make package development easier by providing a range of tools and functions that can be used to improve the quality of your package's documentation, testing, and maybe even functionality.

Maintained by James Wade. Last updated 7 months ago.

chatgpt nlp openai package-development rstudio-addin

7.3 match 293 stars 7.06 score 14 scripts

agdamsbo

REDCapCAST:REDCap Metadata Casting and Castellated Data Handling

Casting metadata for REDCap database creation and handling of castellated data using repeated instruments and longitudinal projects in 'REDCap'. Keeps a focused data export approach, by allowing to only export required data from the database. Also for casting new REDCap databases based on datasets from other sources. Originally forked from the R part of 'REDCapRITS' by Paul Egeler. See <https://github.com/pegeler/REDCapRITS>. 'REDCap' (Research Electronic Data Capture) is a secure, web-based software platform designed to support data capture for research studies, providing 1) an intuitive interface for validated data capture; 2) audit trails for tracking data manipulation and export procedures; 3) automated export procedures for seamless data downloads to common statistical packages; and 4) procedures for data integration and interoperability with external sources (Harris et al (2009) <doi:10.1016/j.jbi.2008.08.010>; Harris et al (2019) <doi:10.1016/j.jbi.2019.103208>).

Maintained by Andreas Gammelgaard Damsbo. Last updated 6 days ago.

8.8 match 1 stars 5.84 score 12 scripts

nicwir

QurvE:Robust and User-Friendly Analysis of Growth and Fluorescence Curves

High-throughput analysis of growth curves and fluorescence data using three methods: linear regression, growth model fitting, and smooth spline fit. Analysis of dose-response relationships via smoothing splines or dose-response models. Complete data analysis workflows can be executed in a single step via user-friendly wrapper functions. The results of these workflows are summarized in detailed reports as well as intuitively navigable 'R' data containers. A 'shiny' application provides access to all features without requiring any programming knowledge. The package is described in further detail in Wirth et al. (2023) <doi:10.1038/s41596-023-00850-7>.

Maintained by Nicolas T. Wirth. Last updated 1 years ago.

8.5 match 25 stars 6.00 score 7 scripts

pacificcommunity

AMPLE:Shiny Apps to Support Capacity Building on Harvest Control Rules

Three Shiny apps are provided that introduce Harvest Control Rules (HCR) for fisheries management. 'Introduction to HCRs' provides a simple overview to how HCRs work. Users are able to select their own HCR and step through its performance, year by year. Biological variability and estimation uncertainty are introduced. 'Measuring performance' builds on the previous app and introduces the idea of using performance indicators to measure HCR performance. 'Comparing performance' allows multiple HCRs to be created and tested, and their performance compared so that the preferred HCR can be selected.

Maintained by Finlay Scott. Last updated 1 years ago.

ofp sam shiny

9.1 match 5.56 score 24 scripts

oobianom

shinyStorePlus:Secure in-Browser and Database Storage for 'shiny' Inputs, Outputs, Views and User Likes

Store persistent and synchronized data from 'shiny' inputs within the browser. Refresh 'shiny' applications and preserve user-inputs over multiple sessions. A database-like storage format is implemented using 'Dexie.js' <https://dexie.org>, a minimal wrapper for 'IndexedDB'. Transfer browser link parameters to 'shiny' input or output values. Store app visitor views, likes and followers.

Maintained by Obinna Obianom. Last updated 21 days ago.

data data-structures shiny

6.1 match 28 stars 8.29 score 93 scripts 1 dependents

bioc

epivizrData:Data Management API for epiviz interactive visualization app

Serve data from Bioconductor Objects through a WebSocket connection.

Maintained by Hector Corrada Bravo. Last updated 5 months ago.

infrastructure visualization

9.9 match 1 stars 5.08 score 4 scripts 4 dependents

ifpri

ARIA:App for IMPACT (App foR ImpAct)

App for IMPACT (App foR ImpAct).

Maintained by Abhijeet Mishra. Last updated 10 months ago.

18.5 match 2.70 score 6 scripts

mreginato

monographaR:Taxonomic Monographs Tools

Contains functions intended to facilitate the production of plant taxonomic monographs. The package includes functions to convert tables into taxonomic descriptions, lists of collectors, examined specimens, identification keys (dichotomous and interactive), and can generate a monograph skeleton. Additionally, wrapper functions to batch the production of phenology histograms and distributional and diversity maps are also available.

Maintained by Marcelo Reginato. Last updated 1 years ago.

10.5 match 3 stars 4.73 score 18 scripts

jbkunst

highcharter:A Wrapper for the 'Highcharts' Library

A wrapper for the 'Highcharts' library including shortcut functions to plot R objects. 'Highcharts' <https://www.highcharts.com/> is a charting library offering numerous chart types with a simple configuration syntax.

Maintained by Joshua Kunst. Last updated 1 years ago.

highcharts htmlwidgets shiny shiny-r visualization wrapper

3.5 match 725 stars 13.93 score 4.9k scripts 18 dependents

bioc

igvShiny:igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)

This package is a wrapper of Integrative Genomics Viewer (IGV). It comprises an htmlwidget version of IGV. It can be used as a module in Shiny apps.

Maintained by Arkadiusz Gladki. Last updated 5 months ago.

software shinyapps sequencing coverage

6.6 match 37 stars 7.40 score 120 scripts

rinterface

argonDash:Argon Shiny Dashboard Template

Create awesome 'Bootstrap 4' dashboards powered by 'Argon'.

Maintained by David Granjon. Last updated 2 months ago.

argon-dashboard-template bootstrap4 shiny shiny-apps

7.5 match 138 stars 6.47 score 72 scripts 2 dependents

rolkra

explore:Simplifies Exploratory Data Analysis

Interactive data exploration with one line of code, automated reporting or use an easy to remember set of tidy functions for low code exploratory data analysis.

Maintained by Roland Krasser. Last updated 3 months ago.

data-exploration data-visualisation decision-trees eda rmarkdown shiny tidy

4.2 match 228 stars 11.43 score 221 scripts 1 dependents

fweber144

shinybrms:Graphical User Interface ('shiny' App) for 'brms'

A graphical user interface (GUI) for fitting Bayesian regression models using the package 'brms' which in turn relies on 'Stan' (<https://mc-stan.org/>). The 'shinybrms' GUI is a 'shiny' app.

Maintained by Frank Weber. Last updated 11 months ago.

bayes bayesian bayesian-data-analysis bayesian-inference bayesian-statistics brms cmdstanr gui mcmc rstan shiny shiny-app stan statistical-analysis statistical-inference statistical-models statistics

12.9 match 10 stars 3.70 score 3 scripts

appsilon

shiny.fluent:Microsoft Fluent UI for Shiny Apps

A rich set of UI components for building Shiny applications, including inputs, containers, overlays, menus, and various utilities. All components from Fluent UI (the underlying JavaScript library) are available and have usage examples in R.

Maintained by Jakub Sobolewski. Last updated 10 months ago.

microsoft-fluent-ui react rhinoverse shiny

4.8 match 280 stars 9.91 score 656 scripts

bioc

iSEEu:iSEE Universe

iSEEu (the iSEE universe) contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels, or modes allowing easy configuration of iSEE applications.

Maintained by Kevin Rue-Albrecht. Last updated 5 months ago.

immunooncology visualization gui dimensionreduction featureextraction clustering transcription geneexpression transcriptomics singlecell cellbasedassays hacktoberfest

6.6 match 9 stars 7.15 score 35 scripts 1 dependents

bioc

chevreulShiny:Tools for managing SingleCellExperiment objects as projects

Tools for managing SingleCellExperiment objects as projects. Includes functions for analysis and visualization of single-cell data. Also included is a shiny app for visualization of pre-processed scRNA data. Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.

Maintained by Kevin Stachelek. Last updated 13 days ago.

coverage rnaseq sequencing visualization geneexpression transcription singlecell transcriptomics normalization preprocessing qualitycontrol dimensionreduction dataimport

9.3 match 5.08 score

bioc

scde:Single Cell Differential Expression

The scde package implements a set of statistical methods for analyzing single-cell RNA-seq data. scde fits individual error models for single-cell RNA-seq measurements. These models can then be used for assessment of differential expression between groups of cells, as well as other types of analysis. The scde package also contains the pagoda framework which applies pathway and gene set overdispersion analysis to identify and characterize putative cell subpopulations based on transcriptional signatures. The overall approach to the differential expression analysis is detailed in the following publication: "Bayesian approach to single-cell differential expression analysis" (Kharchenko PV, Silberstein L, Scadden DT, Nature Methods, doi: 10.1038/nmeth.2967). The overall approach to subpopulation identification and characterization is detailed in the following pre-print: "Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis" (Fan J, Salathia N, Liu R, Kaeser G, Yung Y, Herman J, Kaper F, Fan JB, Zhang K, Chun J, and Kharchenko PV, Nature Methods, doi:10.1038/nmeth.3734).

Maintained by Evan Biederstedt. Last updated 5 months ago.

immunooncology rnaseq statisticalmethod differentialexpression bayesian transcription software analysis bioinformatics heterogenity ngs single-cell transcriptomics openblas cpp openmp

6.3 match 173 stars 7.53 score 141 scripts

bioc

iSEEtree:Interactive visualisation for microbiome data

iSEEtree is an extension of iSEE for the TreeSummarizedExperiment. It leverages the functionality from the miaViz package for microbiome data visualisation to create panels that are specific for TreeSummarizedExperiment objects. Not surprisingly, it also depends on the generic panels from iSEE.

Maintained by Giulio Benedetti. Last updated 6 days ago.

microbiome software visualization gui shinyapps dataimport shiny-apps visualisation

7.5 match 3 stars 6.26 score 5 scripts

cbhurley

ERSA:Exploratory Regression 'Shiny' App

Constructs a 'shiny' app function with interactive displays for summary and analysis of variance regression tables, and parallel coordinate plots of data and residuals.

Maintained by Catherine B. Hurley. Last updated 2 years ago.

12.1 match 3.88 score 15 scripts

cwthom

shinyhelper:Easily Add Markdown Help Files to 'shiny' App Elements

Creates a lightweight way to add markdown helpfiles to 'shiny' apps, using modal dialog boxes, with no need to observe each help button separately.

Maintained by Chris Mason-Thom. Last updated 3 years ago.

shiny

5.3 match 116 stars 8.73 score 298 scripts 17 dependents

bioc

BatchQC:Batch Effects Quality Control Software

Sequencing and microarray samples often are collected or processed in multiple batches or at different times. This often produces technical biases that can lead to incorrect results in the downstream analysis. BatchQC is a software tool that streamlines batch preprocessing and evaluation by providing interactive diagnostics, visualizations, and statistical analyses to explore the extent to which batch variation impacts the data. BatchQC diagnostics help determine whether batch adjustment needs to be done, and how correction should be applied before proceeding with a downstream analysis. Moreover, BatchQC interactively applies multiple common batch effect approaches to the data and the user can quickly see the benefits of each method. BatchQC is developed as a Shiny App. The output is organized into multiple tabs and each tab features an important part of the batch effect analysis and visualization of the data. The BatchQC interface has the following analysis groups: Summary, Differential Expression, Median Correlations, Heatmaps, Circular Dendrogram, PCA Analysis, Shape, ComBat and SVA.

Maintained by Jessica McClintock. Last updated 5 months ago.

batcheffect graphandnetwork microarray normalization principalcomponent sequencing software visualization qualitycontrol rnaseq preprocessing differentialexpression immunooncology

5.2 match 7 stars 8.99 score 54 scripts

ropensci

quadkeyr:Generate Raster Images from QuadKey-Identified Datasets

A set of functions of increasing complexity allows users to (1) convert QuadKey-identified datasets, based on Microsoft's Bing Maps Tile System, into Simple Features data frames, (2) transform Simple Features data frames into rasters, and (3) process multiple Meta (Facebook) QuadKey-identified human mobility files directly into raster files. For more details, see D’Andrea et al. (2024) <doi:10.21105/joss.06500>.

Maintained by Florencia DAndrea. Last updated 4 days ago.

geospatial quadkey raster tilemap

8.1 match 12 stars 5.64 score 7 scripts

r-lib

gargle:Utilities for Working with Google APIs

Provides utilities for working with Google APIs <https://developers.google.com/apis-explorer>. This includes functions and classes for handling common credential types and for preparing, executing, and processing HTTP requests.

Maintained by Jennifer Bryan. Last updated 2 years ago.

authentication google

3.0 match 113 stars 14.88 score 266 scripts 192 dependents

asardaes

dtwclust:Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance

Time series clustering along with optimized techniques related to the Dynamic Time Warping distance and its corresponding lower bounds. Implementations of partitional, hierarchical, fuzzy, k-Shape and TADPole clustering are available. Functionality can be easily extended with custom distance measures and centroid definitions. Implementations of DTW barycenter averaging, a distance based on global alignment kernels, and the soft-DTW distance and centroid routines are also provided. All included distance functions have custom loops optimized for the calculation of cross-distance matrices, including parallelization support. Several cluster validity indices are included.

Maintained by Alexis Sarda. Last updated 8 months ago.

clustering dtw time-series openblas cpp

3.6 match 261 stars 12.39 score 406 scripts 14 dependents

delosh653

mwshiny:'Shiny' for Multiple Windows

A simple function, mwsApp(), that runs a 'shiny' app spanning multiple, connected windows. This uses all standard 'shiny' conventions, and depends only on the 'shiny' package.

Maintained by Hannah De los Santos. Last updated 5 years ago.

7.6 match 25 stars 5.83 score 27 scripts

casecpb

KSEAapp:Kinase-Substrate Enrichment Analysis

Infers relative kinase activity from phosphoproteomics data using the method described by Casado et al. (2013) <doi:10.1126/scisignal.2003573>.

Maintained by Danica D. Wiredja. Last updated 8 years ago.

8.9 match 3 stars 4.82 score 22 scripts

phuse-org

toxSummary:Visualize and Summarize Repeat-Dose Toxicology Study Results

A 'shiny' app that generates plots and summary tables from repeat-dose toxicology study results to facilitate holistic evaluation of the drug safety of active pharmaceutical ingredients (API) prior to initiation of clinical trials.

Maintained by Yousuf Ali. Last updated 11 months ago.

cdisc-send r-shiny-app toxicology visualization

9.2 match 9 stars 4.65 score 4 scripts

smouksassi

ggquickeda:Quickly Explore Your Data Using 'ggplot2' and 'table1' Summary Tables

Quickly and easily perform exploratory data analysis by uploading your data as a 'csv' file. Start generating insights using 'ggplot2' plots and 'table1' tables with descriptive stats, all using an easy-to-use point and click 'Shiny' interface.

Maintained by Samer Mouksassi. Last updated 9 hours ago.

5.1 match 73 stars 8.34 score 27 scripts

statswithr

statsr:Companion Software for the Coursera Statistics with R Specialization

Data and functions to support Bayesian and frequentist inference and decision making for the Coursera Specialization "Statistics with R". See <https://github.com/StatsWithR/statsr> for more information.

Maintained by Merlise Clyde. Last updated 4 years ago.

bayesian-inference coursera statistics

5.4 match 71 stars 7.80 score 880 scripts

kwb-r

kwb.pilot:Importing, Aggregating and Visualising Data From KWB Pilot Plants

Collects, aggregates and visualises operational and analytical data from water suppliers (including a standardised reporting document).

Maintained by Michael Rustler. Last updated 2 years ago.

data-aggregation data-import data-visualisation project-aquanes project-mbr40 project-suleman project-ultimate

10.5 match 1 stars 4.01 score 17 scripts

kwb-r

kwb.hantush:Calculation of Groundwater Mounding Beneath an Infiltration Basin

Calculation groundwater mounding beneath an infiltration basin based on the Hantush (1967) equation (<doi:10.1029/WR003i001p00227>). The correct implementation is shown with a verification example based on a USGS report (page 25, <https://pubs.usgs.gov/sir/2010/5102/support/sir2010-5102.pdf#page=35>).

Maintained by Michael Rustler. Last updated 5 years ago.

groundwater-modelling groundwater-mounding infiltration-basin modelling project-demeau shiny-app

13.9 match 3.00 score 10 scripts

yulab-smu

shinyTempSignal:Explore Temporal and Other Phylogenetic Signals

Sequences sampled at different time points can be used to infer molecular phylogenies on natural time scales, but if the sequences records inaccurate sampling times, that are not the actual sampling times, then it will affect the molecular phylogenetic analysis. This shiny application helps exploring temporal characteristics of the evolutionary trees through linear regression analysis and with the ability to identify and remove incorrect labels. The method was extended to support exploring other phylogenetic signals under strict and relaxed models.

Maintained by Guangchuang Yu. Last updated 1 years ago.

molecular-clock phylogenetics shiny-app

7.5 match 9 stars 5.56 score 7 scripts

ineelhere

shiny.ollama:R 'shiny' Interface for Chatting with Large Language Models Offline on Local with 'ollama'

Chat with large language models like 'deepseek-r1', 'nemotron', 'llama', 'qwen' and many more on your machine without internet with complete privacy via 'ollama', powered by R 'shiny' interface. For more information on 'ollama', visit <https://ollama.com>.

Maintained by Indraneel Chakraborty. Last updated 4 days ago.

deepseek-r1 llama3 llm local-llm offline-first offline-llm ollama ollama-app ollama-gui shiny shinyapp

7.5 match 9 stars 5.50 score 2 scripts

thomasp85

fiery:A Lightweight and Flexible Web Framework

A very flexible framework for building server side logic in R. The framework is unopinionated when it comes to how HTTP requests and WebSocket messages are handled and supports all levels of app complexity; from serving static content to full-blown dynamic web-apps. Fiery does not hold your hand as much as e.g. the shiny package does, but instead sets you free to create your web app the way you want.

Maintained by Thomas Lin Pedersen. Last updated 13 days ago.

http-server httpuv webserver websocket-server

5.1 match 248 stars 8.13 score 34 scripts

cran

lmviz:A Package to Visualize Linear Models Features and Play with Them

Contains a suite of shiny applications meant to explore linear model inference feature through simulation and games.

Maintained by Francesco Pauli. Last updated 5 years ago.

24.0 match 1.70 score

bhii-ksc

qbr:Access the 'Quickbase' JSON API

Programmatically access the 'Quickbase' JSON API <https://developer.quickbase.com>. You supply parameters for an API call, 'qbr' delivers an http request to the API endpoint and returns its response. Outputs follow 'tidyverse' philosophy.

Maintained by John Erdmann. Last updated 2 months ago.

11.0 match 2 stars 3.70 score 4 scripts

insightsengineering

teal.transform:Functions for Extracting and Merging Data in the 'teal' Framework

A standardized user interface for column selection, that facilitates dataset merging in 'teal' framework.

Maintained by Dawid Kaledkowski. Last updated 1 months ago.

merge modules nest transform

4.8 match 3 stars 8.39 score 9 scripts 4 dependents

objornstad

epimdr:Functions and Data for "Epidemics: Models and Data in R"

Functions, data sets and shiny apps for "Epidemics: Models and Data in R" by Ottar N. Bjornstad (ISBN 978-3-319-97487-3) <https://www.springer.com/gp/book/9783319974866>. The package contains functions to study the S(E)IR model, spatial and age-structured SIR models; time-series SIR and chain-binomial stochastic models; catalytic disease models; coupled map lattice models of spatial transmission and network models for social spread of infection. The package is also an advanced quantitative companion to the coursera Epidemics Massive Online Open Course <https://www.coursera.org/learn/epidemics>.

Maintained by Ottar N. Bjornstad. Last updated 5 years ago.

24.3 match 1.65 score 45 scripts

bioc

iSEEhub:iSEE for the Bioconductor ExperimentHub

This package defines a custom landing page for an iSEE app interfacing with the Bioconductor ExperimentHub. The landing page allows users to browse the ExperimentHub, select a data set, download and cache it, and import it directly into a Bioconductor iSEE app.

Maintained by Kevin Rue-Albrecht. Last updated 5 months ago.

dataimport immunooncology infrastructure shinyapps singlecell software bioconductor bioconductor-package hacktoberfest isee

7.2 match 3 stars 5.56 score 4 scripts

shosaco

vistime:Pretty Timelines in R

A library for creating time based charts, like Gantt or timelines. Possible outputs include 'ggplot2' diagrams, 'plotly.js' graphs, 'Highcharts.js' widgets and data.frames. Results can be used in the 'RStudio' viewer pane, in 'RMarkdown' documents or in Shiny apps. In the interactive outputs created by vistime() and hc_vistime(), you can interact with the plot using mouse hover or zoom.

Maintained by Sandro Raabe. Last updated 6 months ago.

charts timelines

4.3 match 174 stars 9.37 score 142 scripts 1 dependents

brry

rdwd:Select and Download Climate Data from 'DWD' (German Weather Service)

Handle climate data from the 'DWD' ('Deutscher Wetterdienst', see <https://www.dwd.de/EN/climate_environment/cdc/cdc_node_en.html> for more information). Choose observational time series from meteorological stations with 'selectDWD()'. Find raster data from radar and interpolation according to <https://bookdown.org/brry/rdwd/raster-data.html>. Download (multiple) data sets with progress bars and no re-downloads through 'dataDWD()'. Read both tabular observational data and binary gridded datasets with 'readDWD()'.

Maintained by Berry Boessenkool. Last updated 6 days ago.

5.1 match 73 stars 7.77 score 79 scripts

appsilon

shiny.telemetry:'Shiny' App Usage Telemetry

Enables instrumentation of 'Shiny' apps for tracking user session events such as input changes, browser type, and session duration. These events can be sent to any of the available storage backends and analyzed using the included 'Shiny' app to gain insights about app usage and adoption.

Maintained by André Veríssimo. Last updated 3 months ago.

analytics rhinoverse shiny

4.1 match 67 stars 9.69 score 29 scripts

mjwestgate

revtools:Tools to Support Evidence Synthesis

Researchers commonly need to summarize scientific information, a process known as 'evidence synthesis'. The first stage of a synthesis process (such as a systematic review or meta-analysis) is to download a list of references from academic search engines such as 'Web of Knowledge' or 'Scopus'. The traditional approach to systematic review is then to sort these data manually, first by locating and removing duplicated entries, and then screening to remove irrelevant content by viewing titles and abstracts (in that order). 'revtools' provides interfaces for each of these tasks. An alternative approach, however, is to draw on tools from machine learning to visualise patterns in the corpus. In this case, you can use 'revtools' to render ordinations of text drawn from article titles, keywords and abstracts, and interactively select or exclude individual references, words or topics.

Maintained by Martin J. Westgate. Last updated 5 years ago.

7.0 match 52 stars 5.57 score 72 scripts

biodosetools-team

biodosetools:An R Shiny Application for Biological Dosimetry

A tool to perform all different statistical tests and calculations needed by Biological Dosimetry Laboratories. Detailed documentation is available in <https://biodosetools-team.github.io/documentation/> and the paper by Hernández et al. (2023) <doi:10.1080/09553002.2023.2176564>.

Maintained by Alfredo Hernández. Last updated 4 months ago.

biological-data dosimetry shiny-app

7.5 match 5 stars 5.20 score 16 scripts

moodymudskipper

boomer:Debugging Tools to Inspect the Intermediate Steps of a Call

Provides debugging tools that let you inspect the intermediate results of a call. The output looks as if we explode a call into its parts hence the package name.

Maintained by Antoine Fabri. Last updated 3 months ago.

4.9 match 138 stars 7.88 score 21 scripts

moshejasper

kindisperse:Simulate and Estimate Close-Kin Dispersal Kernels

Functions for simulating and estimating kinship-related dispersal. Based on the methods described in M. Jasper, T.L. Schmidt., N.W. Ahmad, S.P. Sinkins & A.A. Hoffmann (2019) <doi:10.1111/1755-0998.13043> "A genomic approach to inferring kinship reveals limited intergenerational dispersal in the yellow fever mosquito". Assumes an additive variance model of dispersal in two dimensions, compatible with Wright's neighbourhood area. Simple and composite dispersal simulations are supplied, as well as the functions needed to estimate parent-offspring dispersal for simulated or empirical data, and to undertake sampling design for future field studies of dispersal. For ease of use an integrated Shiny app is also included.

Maintained by Moshe-Elijah Jasper. Last updated 5 months ago.

10.4 match 1 stars 3.70 score 5 scripts

patzaw

bscui:Build SVG Custom User Interface

Render SVG as interactive figures to display contextual information, with selectable and clickable user interface elements. These figures can be seamlessly integrated into 'rmarkdown' and 'Quarto' documents, as well as 'shiny' applications, allowing manipulation of elements and reporting actions performed on them. Additional features include pan, zoom in/out functionality, and the ability to export the figures in SVG or PNG formats.

Maintained by Patrice Godard. Last updated 6 months ago.

6.9 match 11 stars 5.50 score 19 scripts

merlinoa

shinyFeedback:Display User Feedback in Shiny Apps

Easily display user feedback in Shiny apps.

Maintained by Andy Merlino. Last updated 3 years ago.

feedback shiny shiny-inputs

3.6 match 190 stars 10.58 score 209 scripts 16 dependents

bioc

shiny.gosling:A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization for R and Shiny

A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization. http://gosling-lang.org/. This R package is based on gosling.js. It uses R functions to create gosling plots that could be embedded onto R Shiny apps.

Maintained by Appsilon. Last updated 5 months ago.

shinyapps genetics visualization

6.2 match 6.08 score 53 scripts 1 dependents

ayayron

shinyDND:Shiny Drag-n-Drop

Add functionality to create drag and drop div elements in shiny.

Maintained by Aaron Hoffer. Last updated 7 years ago.

draggable-elements drop-elements shiny shiny-apps shinyapps

7.5 match 93 stars 5.01 score 22 scripts

paulgovan

AutoDeskR:An Interface to the 'AutoDesk' 'API' Platform

An interface to the 'AutoDesk' 'API' Platform including the Authentication 'API' for obtaining authentication to the 'AutoDesk' Forge Platform, Data Management 'API' for managing data across the platform's cloud services, Design Automation 'API' for performing automated tasks on design files in the cloud, Model Derivative 'API' for translating design files into different formats, sending them to the viewer app, and extracting design data, and Viewer for rendering 2D and 3D models.

Maintained by Paul Govan. Last updated 6 months ago.

3d-models autodesk viewer

6.1 match 7 stars 6.13 score 16 scripts

bioc

rGREAT:GREAT Analysis - Functional Enrichment on Genomic Regions

GREAT (Genomic Regions Enrichment of Annotations Tool) is a type of functional enrichment analysis directly performed on genomic regions. This package implements the GREAT algorithm (the local GREAT analysis), also it supports directly interacting with the GREAT web service (the online GREAT analysis). Both analysis can be viewed by a Shiny application. rGREAT by default supports more than 600 organisms and a large number of gene set collections, as well as self-provided gene sets and organisms from users. Additionally, it implements a general method for dealing with background regions.

Maintained by Zuguang Gu. Last updated 3 days ago.

genesetenrichment go pathways software sequencing wholegenome genomeannotation coverage cpp

3.8 match 86 stars 9.96 score 320 scripts 1 dependents

liserman

handcodeR:Text Annotation App

Shiny-App that allows to annotate vectors of texts to predefined categories by hand.

Maintained by Lukas Isermann. Last updated 1 years ago.

9.2 match 18 stars 4.03 score 12 scripts

sebastien-plutniak

archeofrag.gui:Spatial Analysis in Archaeology from Refitting Fragments (GUI)

A 'Shiny' application to access the functionalities and datasets of the 'archeofrag' package for spatial analysis in archaeology from refitting data. Quick and seamless exploration of archaeological refitting datasets, focusing on physical refits only. Features include: built-in documentation and convenient workflow, plot generation and export, R code generation to re-execute simulations in R and ensure reproducibility, code generation for the openMOLE model exploration software, support for parallel computing to speed up computations. A demonstration version of the app is available at <https://analytics.huma-num.fr/Sebastien.Plutniak/archeofrag/>.

Maintained by Sebastien Plutniak. Last updated 7 days ago.

archaeology fragmentation shiny-apps taphonomy

8.0 match 5 stars 4.60 score

dreamrs

shinybusy:Busy Indicators and Notifications for 'Shiny' Applications

Add indicators (spinner, progress bar, gif) in your 'shiny' applications to show the user that the server is busy. And other tools to let your users know something is happening (send notifications, reports, ...).

Maintained by Victor Perrier. Last updated 6 months ago.

shiny

3.1 match 142 stars 11.70 score 772 scripts 39 dependents

obenno

scSpotlight:A Single Cell Analysis Shiny App

A single cell analysis (viewer) app based on Seurat.

Maintained by Zhixia Xiao. Last updated 7 months ago.

seurat shiny-apps single-cell

13.1 match 2 stars 2.78 score

capiaas

shinyservicebot:Servicebot 'Shiny' Integration

Create in-app purchasing and subscriptions through 'Servicebot' payment using the 'Stripe' framework.

Maintained by Bjorn Ole Lindseth. Last updated 5 years ago.

8.1 match 6 stars 4.48 score 9 scripts

ohdsi

PatientLevelPrediction:Develop Clinical Prediction Models Using the Common Data Model

A user friendly way to create patient level prediction models using the Observational Medical Outcomes Partnership Common Data Model. Given a cohort of interest and an outcome of interest, the package can use data in the Common Data Model to build a large set of features. These features can then be used to fit a predictive model with a number of machine learning algorithms. This is further described in Reps (2017) <doi:10.1093/jamia/ocy032>.

Maintained by Egill Fridgeirsson. Last updated 9 days ago.

hades openjdk

3.3 match 190 stars 10.85 score 297 scripts

8-bit-sheep

googleAnalyticsR:Google Analytics API into R

Interact with the Google Analytics APIs <https://developers.google.com/analytics/>, including the Core Reporting API (v3 and v4), Management API, User Activity API GA4's Data API and Admin API and Multi-Channel Funnel API.

Maintained by Erik Grönroos. Last updated 6 months ago.

analytics api google googleanalyticsr googleauthr

3.5 match 262 stars 10.11 score 680 scripts 1 dependents

a2-ai

ghqc:Manage QC via GitHub Issues using Shiny Apps

This package launches 3 ghqc applications as background jobs to aid the QC process through the use of shiny apps. It also contains aides to maintain the proper setup of the ecosystem. Namely, it will aid in the installation of ghqc.app and its dependendencies into an isolated directory as to not interfere with the project being QCed.

Maintained by Wes Cummings. Last updated 1 months ago.

11.8 match 3.04 score 3 scripts

ropensci

qcoder:Lightweight Qualitative Coding

A free, lightweight, open source option for analyzing text-based qualitative data. Enables analysis of interview transcripts, observation notes, memos, and other sources. Supports the work of social scientists, historians, humanists, and other researchers who use qualitative methods. Addresses the unique challenges faced in analyzing qualitative data analysis. Provides opportunities for researchers who otherwise might not develop software to build software development skills.

Maintained by Elin Waring. Last updated 3 years ago.

unconf unconf18

7.1 match 134 stars 5.05 score 13 scripts

rcapell

HYPEtools:Tools for Processing and Analyzing Files from the Hydrological Catchment Model HYPE

Work with model files (setup, input, output) from the hydrological catchment model HYPE: Streamlined file import and export, standard evaluation plot routines, diverse post-processing and aggregation routines for hydrological model analysis. The HYPEtools package is also archived at <doi:10.5281/zenodo.7627955> and can be cited in publications with Brendel et al. (2024) <doi:10.1016/j.envsoft.2024.106094>.

Maintained by Rene Capell. Last updated 26 days ago.

4.7 match 17 stars 7.54 score 26 scripts

fernandoroa

idiogramFISH:Shiny App. Idiograms with Marks and Karyotype Indices

Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with visible chromatids. Supports micrometers, cM and Mb or any unit. Three styles of centromeres are available: triangle, rounded and inProtein; and six styles of marks are available: square (squareLeft), dots, cM (cMLeft), cenStyle, upArrow (downArrow), exProtein (inProtein); its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).

Maintained by Fernando Roa. Last updated 9 months ago.

8.5 match 4.14 score 5 scripts

ropensci

MtreeRing:A Shiny Application for Automatic Measurements of Tree-Ring Widths on Digital Images

Use morphological image processing and edge detection algorithms to automatically measure tree ring widths on digital images. Users can also manually mark tree rings on species with complex anatomical structures. The arcs of inner-rings and angles of successive inclined ring boundaries are used to correct ring-width series. The package provides a Shiny-based application, allowing R beginners to easily analyze tree ring images and export ring-width series in standard file formats.

Maintained by Jingning Shi. Last updated 8 months ago.

dendrochronology forest forestry shiny-apps shinyapp tree-ring-width tree-rings

7.5 match 33 stars 4.66 score 14 scripts

yihui

formatR:Format R Code Automatically

Provides a function tidy_source() to format R source code. Spaces and indent will be added to the code automatically, and comments will be preserved under certain conditions, so that R code will be more human-readable and tidy. There is also a Shiny app as a user interface in this package (see tidy_app()).

Maintained by Yihui Xie. Last updated 1 years ago.

code-formatter

2.3 match 259 stars 15.07 score 1.4k scripts 1.2k dependents

anders-biostat

jrc:Exchange Commands Between R and 'JavaScript'

An 'httpuv' based bridge between R and 'JavaScript'. Provides an easy way to exchange commands and data between a web page and a currently running R session.

Maintained by Svetlana Ovchinnikova. Last updated 2 years ago.

7.4 match 16 stars 4.68 score 5 scripts 2 dependents

paws-r

paws.management:'Amazon Web Services' Management & Governance Services

Interface to 'Amazon Web Services' management and governance services, including 'CloudWatch' application and infrastructure monitoring, 'Auto Scaling' for automatically scaling resources, and more <https://aws.amazon.com/>.

Maintained by Dyfan Jones. Last updated 3 days ago.

aws aws-sdk

3.8 match 332 stars 9.09 score 1 scripts 15 dependents

dfv-ms

piwikproR:Access 'Piwik Pro' Website Statistics

Run Queries against the API of 'Piwik Pro' <https://developers.piwik.pro/en/latest/custom_reports/http_api/http_api.html>. The result is a tibble.

Maintained by Martin Stingl. Last updated 2 years ago.

piwik

8.6 match 4.00 score 7 scripts

sigbertklinke

demoShiny:Runs a 'Shiny' App as Demo or Lists All Demo 'Shiny' Apps

Mimics the demo functionality for 'Shiny' apps in a package. Apps stored to the package subdirectory 'inst/shiny' can be called by demoShiny(topic).

Maintained by Sigbert Klinke. Last updated 5 years ago.

9.3 match 3.70 score

bioc

scMultiSim:Simulation of Multi-Modality Single Cell Data Guided By Gene Regulatory Networks and Cell-Cell Interactions

scMultiSim simulates paired single cell RNA-seq, single cell ATAC-seq and RNA velocity data, while incorporating mechanisms of gene regulatory networks, chromatin accessibility and cell-cell interactions. It allows users to tune various parameters controlling the amount of each biological factor, variation of gene-expression levels, the influence of chromatin accessibility on RNA sequence data, and so on. It can be used to benchmark various computational methods for single cell multi-omics data, and to assist in experimental design of wet-lab experiments.

Maintained by Hechen Li. Last updated 5 months ago.

singlecell transcriptomics geneexpression sequencing experimentaldesign

4.8 match 23 stars 7.15 score 11 scripts

plotly

plotly:Create Interactive Web Graphics via 'plotly.js'

Create interactive web graphics from 'ggplot2' graphs and/or a custom interface to the (MIT-licensed) JavaScript library 'plotly.js' inspired by the grammar of graphics.

Maintained by Carson Sievert. Last updated 3 months ago.

d3js data-visualization ggplot2 javascript plotly shiny webgl

1.8 match 2.6k stars 19.43 score 93k scripts 797 dependents

rstudio

DT:A Wrapper of the JavaScript Library 'DataTables'

Data objects in R can be rendered as HTML tables using the JavaScript library 'DataTables' (typically via R Markdown or Shiny). The 'DataTables' library has been included in this R package. The package name 'DT' is an abbreviation of 'DataTables'.

Maintained by Joe Cheng. Last updated 3 months ago.

datatables htmlwidgets javascript shiny

1.8 match 604 stars 19.15 score 38k scripts 673 dependents

rstudio

shinyvalidate:Input Validation for Shiny Apps

Improves the user experience of Shiny apps by helping to provide feedback when required inputs are missing, or input values are not valid.

Maintained by Carson Sievert. Last updated 1 years ago.

shiny ui validation

3.7 match 112 stars 9.10 score 316 scripts 13 dependents

polkas

pacs:Supplementary Tools for R Packages Developers

Supplementary utils for CRAN maintainers and R packages developers. Validating the library, packages and lock files. Exploring a complexity of a specific package like evaluating its size in bytes with all dependencies. The shiny app complexity could be explored too. Assessing the life duration of a specific package version. Checking a CRAN package check page status for any errors and warnings. Retrieving a DESCRIPTION or NAMESPACE file for any package version. Comparing DESCRIPTION or NAMESPACE files between different package versions. Getting a list of all releases for a specific package. The Bioconductor is partly supported.

Maintained by Maciej Nasinski. Last updated 6 months ago.

bioconductor dependencies library lifeduration renv shiny tools utils

5.8 match 25 stars 5.70 score 8 scripts

cran

soundgen:Sound Synthesis and Acoustic Analysis

Performs parametric synthesis of sounds with harmonic and noise components such as animal vocalizations or human voice. Also offers tools for audio manipulation and acoustic analysis, including pitch tracking, spectral analysis, audio segmentation, pitch and formant shifting, etc. Includes four interactive web apps for synthesizing and annotating audio, manually correcting pitch contours, and measuring formant frequencies. Reference: Anikin (2019) <doi:10.3758/s13428-018-1095-7>.

Maintained by Andrey Anikin. Last updated 2 months ago.

6.8 match 1 stars 4.86 score 110 scripts 2 dependents

skranz

RTutor:Interactive R problem sets with automatic testing of solutions and automatic hints

Interactive R problem sets with automatic testing of solutions and automatic hints

Maintained by Sebastian Kranz. Last updated 1 years ago.

economics learn-to-code problem-set rstudio rtutor shiny teaching

5.6 match 205 stars 5.83 score 111 scripts 1 dependents

tilltnet

egor:Import and Analyse Ego-Centered Network Data

Tools for importing, analyzing and visualizing ego-centered network data. Supports several data formats, including the export formats of 'EgoNet', 'EgoWeb 2.0' and 'openeddi'. An interactive (shiny) app for the intuitive visualization of ego-centered networks is provided. Also included are procedures for creating and visualizing Clustered Graphs (Lerner 2008 <DOI:10.1109/PACIFICVIS.2008.4475458>).

Maintained by Till Krenz. Last updated 13 days ago.

ego-centered egonet egor network-analysis sna

3.7 match 24 stars 8.64 score 76 scripts 2 dependents

openvolley

ovva:A Shiny App for Volleyball Video Analysis

A Shiny app and supporting functions for analysis of volleyball video and scouted match files.

Maintained by Adrien Ickowicz. Last updated 4 months ago.

10.8 match 6 stars 2.95 score 7 scripts

pedrocoutinhosilva

shiny.pwa:Progressive Web App Support for Shiny

Adds Progressive Web App support for Shiny apps, including desktop and mobile installations.

Maintained by Pedro Silva. Last updated 4 years ago.

pwa shiny

5.5 match 57 stars 5.76 score 20 scripts

rstudio

bslib:Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'

Simplifies custom 'CSS' styling of both 'shiny' and 'rmarkdown' via 'Bootstrap' 'Sass'. Supports 'Bootstrap' 3, 4 and 5 as well as their various 'Bootswatch' themes. An interactive widget is also provided for previewing themes in real time.

Maintained by Carson Sievert. Last updated 11 days ago.

bootstrap htmltools rmarkdown sass shiny

1.8 match 511 stars 18.02 score 5.1k scripts 4.3k dependents

srkobakian

taipan:Tool for Annotating Images in Preparation for Analysis

A tool to help create shiny apps for selecting and annotating elements of images. Users must supply images, questions, and answer choices. The user interface is a dynamic shiny app, that displays the images and questions and answer choices. The data generated can be saved to a file that can be used for subsequent analysis. The original purpose was to annotate still images from tennis video for face recognition and emotion detection purposes.

Maintained by Stephanie Kobakian. Last updated 5 years ago.

5.3 match 33 stars 5.95 score 27 scripts

robinhankin

approximator:Bayesian Prediction of Complex Computer Codes

Performs Bayesian prediction of complex computer codes when fast approximations are available. It uses a hierarchical version of the Gaussian process, originally proposed by Kennedy and O'Hagan (2000), Biometrika 87(1):1.

Maintained by Robin K. S. Hankin. Last updated 2 years ago.

8.3 match 3.80 score 21 scripts 1 dependents

jimbrig

rtraining:R Training Resources, Guides, Tips, and Knowledge Base

Houses variouse material realted to teaching R.

Maintained by Jimmy Briggs. Last updated 2 years ago.

best-practices curation developer-tools development development-environment guide knowledge package-development setup shiny-apps tips-and-tricks training training-materials walkthrough

8.7 match 4 stars 3.60 score 6 scripts

jeanbertinr

shinyML:Compare Supervised Machine Learning Models Using Shiny App

Implementation of a shiny app to easily compare supervised machine learning model performances. You provide the data and configure each model parameter directly on the shiny app. Different supervised learning algorithms can be tested either on Spark or H2O frameworks to suit your regression and classification tasks. Implementation of available machine learning models on R has been done by Lantz (2013, ISBN:9781782162148).

Maintained by Jean Bertin. Last updated 4 years ago.

6.8 match 59 stars 4.58 score 13 scripts

evanbiederstedt

Rook:HTTP Web Server for R

An HTTP web server for R with a documented API to interface between R and the server. The documentation contains the Rook specification and details for building and running Rook applications. To get started, be sure and read the 'Rook' help file first.

Maintained by Evan Biederstedt. Last updated 2 years ago.

5.6 match 1 stars 5.54 score 109 scripts 3 dependents

dmurdoch

rgl:3D Visualization Using OpenGL

Provides medium to high level functions for 3D interactive graphics, including functions modelled on base graphics (plot3d(), etc.) as well as functions for constructing representations of geometric objects (cube3d(), etc.). Output may be on screen using OpenGL, or to various standard 3D file formats including WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.

Maintained by Duncan Murdoch. Last updated 2 months ago.

graphics opengl rgl webgl libglu libglvnd libpng libx11 freetype cpp

1.8 match 91 stars 17.49 score 7.3k scripts 300 dependents

andreash0

leafdown:Provides Drill Down Functionality for 'leaflet' Choropleths

Provides drill down functionality for 'leaflet' choropleths in 'shiny' apps.

Maintained by Andreas Hofheinz. Last updated 2 years ago.

7.9 match 3.87 score 49 scripts

asalavaty

influential:Identification and Classification of the Most Influential Nodes

Contains functions for the classification and ranking of top candidate features, reconstruction of networks from adjacency matrices and data frames, analysis of the topology of the network and calculation of centrality measures, and identification of the most influential nodes. Also, a function is provided for running SIRIR model, which is the combination of leave-one-out cross validation technique and the conventional SIR model, on a network to unsupervisedly rank the true influence of vertices. Additionally, some functions have been provided for the assessment of dependence and correlation of two network centrality measures as well as the conditional probability of deviation from their corresponding means in opposite direction. Fred Viole and David Nawrocki (2013, ISBN:1490523995). Csardi G, Nepusz T (2006). "The igraph software package for complex network research." InterJournal, Complex Systems, 1695. Adopted algorithms and sources are referenced in function document.

Maintained by Adrian Salavaty. Last updated 5 months ago.

centrality-measures classification-model influence-ranking network-analysis priaritization-model

4.7 match 27 stars 6.54 score 43 scripts 1 dependents

zauchnerp

gmoTree:Get and Modify 'oTree' Data

Efficiently manage and process data from 'oTree' experiments. Import 'oTree' data and clean them by using functions that handle messy data, dropouts, and other problematic cases. Create IDs, calculate the time, transfer variables between app data frames, and delete sensitive information. Review your experimental data prior to running the experiment and automatically generate a detailed summary of the variables used in your 'oTree' code. Information on 'oTree' is found in Chen, D. L., Schonger, M., & Wickens, C. (2016) <doi:10.1016/j.jbef.2015.12.001>.

Maintained by Patricia F. Zauchner. Last updated 1 months ago.

otree

5.6 match 4 stars 5.45 score 8 scripts

irinagain

iglu:Interpreting Glucose Data from Continuous Glucose Monitors

Implements a wide range of metrics for measuring glucose control and glucose variability based on continuous glucose monitoring data. The list of implemented metrics is summarized in Rodbard (2009) <doi:10.1089/dia.2009.0015>. Additional visualization tools include time-series plots, lasagna plots and ambulatory glucose profile report.

Maintained by Irina Gaynanova. Last updated 10 days ago.

3.4 match 26 stars 9.00 score 39 scripts

stefanedwards

AzureAppInsights:Include Azure Application Insights in Shiny apps.

Imports Azure Application Insights for web pages into Shiny apps via Microsoft's JS snippet. Allows app developers to submit page tracking and submit events.

Maintained by Stefan McKinnon Høj-Edwards. Last updated 4 years ago.

application-insights shiny-apps

11.2 match 2.70 score 2 scripts

oobianom

r2social:Seamless Integration of Sharing and Connect Buttons in Markdown and Apps

Implementation of 'JQuery' <https://jquery.com> and 'CSS' styles to allow easy incorporation of various social media elements on a page. The elements include addition of share buttons or connect with us buttons or hyperlink buttons to 'Shiny' applications or dashboards and 'Rmarkdown' documents.Sharing capability on social media platforms including 'Facebook' <https://www.facebook.com>, 'Linkedin' <https://www.linkedin.com>, 'X/Twitter' <https://x.com>, 'Tumblr' <https://www.tumblr.com>, 'Pinterest' <https://www.pinterest.com>, 'Whatsapp' <https://www.whatsapp.com>, 'Reddit' <https://www.reddit.com>, 'Baidu' <https://www.baidu.com>, 'Blogger' <https://www.blogger.com>, 'Weibo' <https://www.weibo.com>, 'Instagram' <https://www.instagram.com>, 'Telegram' <https://www.telegram.me>, 'Youtube' <https://www.youtube.com>.

Maintained by Obinna Obianom. Last updated 8 months ago.

base64 html javascript

5.6 match 6 stars 5.42 score 29 scripts

bioc

scanMiRApp:scanMiR shiny application

A shiny interface to the scanMiR package. The application enables the scanning of transcripts and custom sequences for miRNA binding sites, the visualization of KdModels and binding results, as well as browsing predicted repression data. In addition contains the IndexedFst class for fast indexed reading of large GenomicRanges or data.frames, and some utilities for facilitating scans and identifying enriched miRNA-target pairs.

Maintained by Pierre-Luc Germain. Last updated 5 months ago.

mirna sequencematching gui shinyapps

6.2 match 4.88 score 19 scripts

rstudio

leaflet:Create Interactive Web Maps with the JavaScript 'Leaflet' Library

Create and customize interactive maps using the 'Leaflet' JavaScript library and the 'htmlwidgets' package. These maps can be used directly from the R console, from 'RStudio', in Shiny applications and R Markdown documents.

Maintained by Joe Cheng. Last updated 13 days ago.

gis leaflet-map spatial

1.8 match 821 stars 17.20 score 39k scripts 178 dependents

jkkishore85

PERK:Predicting Environmental Concentration and Risk

A Shiny Web Application to predict and visualize concentrations of pharmaceuticals in the aqueous environment. Jagadeesan K., Barden R. and Kasprzyk-Hordern B. (2022) <https://www.ssrn.com/abstract=4306129>.

Maintained by Kishore Kumar Jagadeesan. Last updated 2 years ago.

environmental-monitoring pharmaceuticals prediction-model shiny shiny-apps shiny-r

7.5 match 2 stars 4.00 score 1 scripts

appsilon

rhino:A Framework for Enterprise Shiny Applications

A framework that supports creating and extending enterprise Shiny applications using best practices.

Maintained by Kamil Żyła. Last updated 3 days ago.

rhinoverse shiny

3.3 match 304 stars 8.99 score 145 scripts

daroczig

logger:A Lightweight, Modern and Flexible Logging Utility

Inspired by the the 'futile.logger' R package and 'logging' Python module, this utility provides a flexible and extensible way of formatting and delivering log messages with low overhead.

Maintained by Gergely Daróczi. Last updated 2 months ago.

1.8 match 298 stars 16.88 score 1.5k scripts 98 dependents

smouksassi

coveffectsplot:Produce Forest Plots to Visualize Covariate Effects

Produce forest plots to visualize covariate effects using either the command line or an interactive 'Shiny' application.

Maintained by Samer Mouksassi. Last updated 1 months ago.

3.8 match 32 stars 7.86 score 40 scripts

wincowgerdev

OpenSpecy:Analyze, Process, Identify, and Share Raman and (FT)IR Spectra

Raman and (FT)IR spectral analysis tool for plastic particles and other environmental samples (Cowger et al. 2021, <doi:10.1021/acs.analchem.1c00123>). With read_any(), Open Specy provides a single function for reading individual, batch, or map spectral data files like .asp, .csv, .jdx, .spc, .spa, .0, and .zip. process_spec() simplifies processing spectra, including smoothing, baseline correction, range restriction and flattening, intensity conversions, wavenumber alignment, and min-max normalization. Spectra can be identified in batch using an onboard reference library (Cowger et al. 2020, <doi:10.1177/0003702820929064>) using match_spec(). A Shiny app is available via run_app() or online at <https://openanalysis.org/openspecy/>.

Maintained by Win Cowger. Last updated 17 days ago.

3.9 match 29 stars 7.58 score 22 scripts

thomasp85

shinyFiles:A Server-Side File System Viewer for Shiny

Provides functionality for client-side navigation of the server side file system in shiny apps. In case the app is running locally this gives the user direct access to the file system without the need to "download" files to a temporary location. Both file and folder selection as well as file saving is available.

Maintained by Thomas Lin Pedersen. Last updated 2 years ago.

filemanager shiny ui-components

2.5 match 199 stars 11.70 score 736 scripts 60 dependents

r-lib

profvis:Interactive Visualizations for Profiling R Code

Interactive visualizations for profiling R code.

Maintained by Hadley Wickham. Last updated 6 months ago.

1.9 match 310 stars 15.63 score 1.3k scripts 152 dependents

rameshram96

visvaR:Shiny-Based Statistical Solutions for Agricultural Research

Visualize Variance is an intuitive 'shiny' applications tailored for agricultural research data analysis, including one-way and two-way analysis of variance, correlation, and other essential statistical tools. Users can easily upload their datasets, perform analyses, and download the results as a well-formatted document, streamlining the process of data analysis and reporting in agricultural research.The experimental design methods are based on classical work by Fisher (1925) and Scheffe (1959). The correlation visualization approaches follow methods developed by Wei & Simko (2021) and Friendly (2002) <doi:10.1198/000313002533>.

Maintained by Ramesh Ramasamy. Last updated 4 months ago.

agriculture anova-analysis correlation exper experimental experimental-design

8.3 match 3.54 score 6 scripts

bioc

cbpManager:Generate, manage, and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics

This R package provides an R Shiny application that enables the user to generate, manage, and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics. Create cancer studies and edit its metadata. Upload mutation data of a patient that will be concatenated to the data_mutation_extended.txt file of the study. Create and edit clinical patient data, sample data, and timeline data. Create custom timeline tracks for patients.

Maintained by Arsenij Ustjanzew. Last updated 5 months ago.

immunooncology dataimport datarepresentation gui thirdpartyclient preprocessing visualization cancer-genomics cbioportal clinical-data filegenerator mutation-data patient-data

5.3 match 8 stars 5.51 score 1 scripts

johncoene

tippy:Add Tooltips to 'R markdown' Documents or 'Shiny' Apps

'Htmlwidget' of 'Tippyjs' to add tooltips to 'Shiny' apps and 'R markdown' documents.

Maintained by John Coene. Last updated 2 years ago.

htmlwidget htmlwidgets

3.4 match 77 stars 8.47 score 193 scripts 14 dependents

ddediu

AdhereRViz:Adherence to Medications

Interactive graphical user interface (GUI) for the package 'AdhereR', allowing the user to access different data sources, to explore the patterns of medication use therein, and the computation of various measures of adherence. It is implemented using Shiny and HTML/CSS/JavaScript.

Maintained by Dan Dediu. Last updated 1 years ago.

adherence-to-medications electronic-healthcare-data hadoop medical-databases medication-histories python sql visualisation

6.1 match 28 stars 4.75 score 2 scripts

bioc

pcaExplorer:Interactive Visualization of RNA-seq Data Using a Principal Components Approach

This package provides functionality for interactive visualization of RNA-seq datasets based on Principal Components Analysis. The methods provided allow for quick information extraction and effective data exploration. A Shiny application encapsulates the whole analysis.

Maintained by Federico Marini. Last updated 3 months ago.

immunooncology visualization rnaseq dimensionreduction principalcomponent qualitycontrol gui reportwriting shinyapps bioconductor principal-components reproducible-research rna-seq-analysis rna-seq-data shiny transcriptome user-friendly

3.0 match 56 stars 9.63 score 180 scripts

abbvie-external

OmicNavigator:Open-Source Software for 'Omic' Data Analysis and Visualization

A tool for interactive exploration of the results from 'omics' experiments to facilitate novel discoveries from high-throughput biology. The software includes R functions for the 'bioinformatician' to deposit study metadata and the outputs from statistical analyses (e.g. differential expression, enrichment). These results are then exported to an interactive JavaScript dashboard that can be interrogated on the user's local machine or deployed online to be explored by collaborators. The dashboard includes 'sortable' tables, interactive plots including network visualization, and fine-grained filtering based on statistical significance.

Maintained by John Blischak. Last updated 3 days ago.

bioinformatics genomics omics opencpu

3.8 match 34 stars 7.68 score 31 scripts

crp2a

gammaShiny:'shiny' Applications for the R Package 'gamma'

A collection of 'shiny' applications for the R package 'gamma'.

Maintained by Archéosciences Bordeaux. Last updated 6 months ago.

archaeometry geochronology luminescence-dating shiny-apps

9.5 match 7 stars 3.02 score 4 scripts

bioc

scviR:experimental inferface from R to scvi-tools

This package defines interfaces from R to scvi-tools. A vignette works through the totalVI tutorial for analyzing CITE-seq data. Another vignette compares outputs of Chapter 12 of the OSCA book with analogous outputs based on totalVI quantifications. Future work will address other components of scvi-tools, with a focus on building understanding of probabilistic methods based on variational autoencoders.

Maintained by Vincent Carey. Last updated 5 months ago.

infrastructure singlecell dataimport bioconductor cite-seq scverse

5.1 match 6 stars 5.60 score 11 scripts

kwb-r

kwb.wtaq:Interface to WTAQ Drawdown Model (http://water.usgs.gov/ogw/wtaq/)

Functions enabling the writing of WTAQ input files, running of WTAQ and reading of WTAQ output files.

Maintained by Hauke Sonnenberg. Last updated 3 years ago.

drawdown-model groundwater-modelling modelling project-optiwells2 shiny-app usgs wtaq fortran

7.5 match 2 stars 3.78 score 9 scripts 1 dependents

appsilon

shiny.info:'shiny' Info

Displays simple diagnostic information of the 'shiny' project in the user interface of the app.

Maintained by Jakub Nowicki. Last updated 11 months ago.

rhinoverse shiny

4.2 match 61 stars 6.73 score 25 scripts

benmbutler

powdR:Full Pattern Summation of X-Ray Powder Diffraction Data

Full pattern summation of X-ray powder diffraction data as described in Chipera and Bish (2002) <doi:10.1107/S0021889802017405> and Butler and Hillier (2021) <doi:10.1016/j.cageo.2020.104662>. Derives quantitative estimates of crystalline and amorphous phase concentrations in complex mixtures.

Maintained by Benjamin Butler. Last updated 3 years ago.

5.0 match 12 stars 5.56 score 30 scripts

r-lib

ghapps:Authenticate as a 'GitHub' App

'GitHub' apps provide a powerful way to manage fine grained programmatic access to specific 'git' repositories, without having to create dummy users, and which are safer than a personal access token for automated tasks. This package extends the 'gh' package to let you authenticate and interact with 'GitHub' <https://docs.github.com/en/rest/overview> in 'R' as an app.

Maintained by Jeroen Ooms. Last updated 5 months ago.

6.1 match 20 stars 4.48 score 1 scripts

ropensci

targets:Dynamic Function-Oriented 'Make'-Like Declarative Pipelines

Pipeline tools coordinate the pieces of computationally demanding analysis projects. The 'targets' package is a 'Make'-like pipeline tool for statistics and data science in R. The package skips costly runtime for tasks that are already up to date, orchestrates the necessary computation with implicit parallel computing, and abstracts files as R objects. If all the current output matches the current upstream code and data, then the whole pipeline is up to date, and the results are more trustworthy than otherwise. The methodology in this package borrows from GNU 'Make' (2015, ISBN:978-9881443519) and 'drake' (2018, <doi:10.21105/joss.00550>).

Maintained by William Michael Landau. Last updated 2 days ago.

data-science high-performance-computing make peer-reviewed pipeline r-targetopia reproducibility reproducible-research targets workflow

1.8 match 973 stars 15.20 score 4.6k scripts 22 dependents

patzaw

ReDaMoR:Relational Data Modeler

The aim of this package is to manipulate relational data models in R. It provides functions to create, modify and export data models in json format. It also allows importing models created with 'MySQL Workbench' (<https://www.mysql.com/products/workbench/>). These functions are accessible through a graphical user interface made with 'shiny'. Constraints such as types, keys, uniqueness and mandatory fields are automatically checked and corrected when editing a model. Finally, real data can be confronted to a model to check their compatibility.

Maintained by Patrice Godard. Last updated 23 days ago.

4.3 match 17 stars 6.24 score 17 scripts 1 dependents

bioc

epivizrChart:R interface to epiviz web components

This package provides an API for interactive visualization of genomic data using epiviz web components. Objects in R/BioConductor can be used to generate interactive R markdown/notebook documents or can be visualized in the R Studio's default viewer.

Maintained by Hector Corrada Bravo. Last updated 5 months ago.

visualization gui

5.7 match 4.68 score 12 scripts