Showing 7 of total 7 results (show query)
thomasp85
fiery:A Lightweight and Flexible Web Framework
A very flexible framework for building server side logic in R. The framework is unopinionated when it comes to how HTTP requests and WebSocket messages are handled and supports all levels of app complexity; from serving static content to full-blown dynamic web-apps. Fiery does not hold your hand as much as e.g. the shiny package does, but instead sets you free to create your web app the way you want.
Maintained by Thomas Lin Pedersen. Last updated 14 days ago.
http-serverhttpuvwebserverwebsocket-server
10.0 match 248 stars 8.13 score 34 scripts
djnavarro
jaysire:Build jsPsych Experiments in R
The jaysire package allows the user to build browser based behavioral experiments within R by providing an interface to the jsPsych javascript library.
Maintained by Danielle Navarro. Last updated 4 years ago.
5.3 match 45 stars 4.26 score 27 scripts
bioc
GEOexplorer:GEOexplorer: a webserver for gene expression analysis and visualisation
GEOexplorer is a webserver and R/Bioconductor package and web application that enables users to perform gene expression analysis. The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https: //www.ncbi.nlm.nih.gov/geo/geo2r/).
Maintained by Guy Hunt. Last updated 5 months ago.
softwaregeneexpressionmrnamicroarraydifferentialexpressionmicroarraymicrornaarraytranscriptomicsrnaseq
3.4 match 5 stars 5.32 score 14 scriptsbioc
igvR:igvR: integrative genomics viewer
Access to igv.js, the Integrative Genomics Viewer running in a web browser.
Maintained by Arkadiusz Gladki. Last updated 5 months ago.
visualizationthirdpartyclientgenomebrowsers
1.1 match 43 stars 8.31 score 118 scripts
symbolrush
osrmr:Wrapper for the 'OSRM' API
Wrapper around the 'Open Source Routing Machine (OSRM)' API <http://project-osrm.org/>. 'osrmr' works with API versions 4 and 5 and can handle servers that run locally as well as the 'OSRM' webserver.
Maintained by Adrian Staempfli. Last updated 4 years ago.
2.1 match 3.06 score 23 scriptsbioc
epivizr:R Interface to epiviz web app
This package provides connections to the epiviz web app (http://epiviz.cbcb.umd.edu) for interactive visualization of genomic data. Objects in R/bioc interactive sessions can be displayed in genome browser tracks or plots to be explored by navigation through genomic regions. Fundamental Bioconductor data structures are supported (e.g., GenomicRanges and RangedSummarizedExperiment objects), while providing an easy mechanism to support other data structures (through package epivizrData). Visualizations (using d3.js) can be easily added to the web app as well.
Maintained by Hector Corrada Bravo. Last updated 5 months ago.
visualizationinfrastructuregui
1.2 match 5.24 score 29 scripts 2 dependentsbioc
pfamAnalyzeR:Identification of domain isotypes in pfam data
Protein domains is one of the most import annoation of proteins we have with the Pfam database/tool being (by far) the most used tool. This R package enables the user to read the pfam prediction from both webserver and stand-alone runs into R. We have recently shown most human protein domains exist as multiple distinct variants termed domain isotypes. Different domain isotypes are used in a cell, tissue, and disease-specific manner. Accordingly, we find that domain isotypes, compared to each other, modulate, or abolish the functionality of a protein domain. This R package enables the identification and classification of such domain isotypes from Pfam data.
Maintained by Kristoffer Vitting-Seerup. Last updated 5 months ago.
alternativesplicingtranscriptomevariantbiomedicalinformaticsfunctionalgenomicssystemsbiologyannotationfunctionalpredictiongenepredictiondataimport
0.5 match 1 stars 3.78 score 1 scripts 1 dependents