R-universe search: viewer

swsoyee

r3dmol:Create Interactive 3D Visualizations of Molecular Data

Create rich and fully interactive 3D visualizations of molecular data. Visualizations can be included in Shiny apps and R markdown documents, or viewed from the R console and 'RStudio' Viewer. 'r3dmol' includes an extensive API to manipulate the visualization after creation, and supports getting data out of the visualization into R. Based on the '3dmol.js' and the 'htmlwidgets' R package.

Maintained by Wei Su. Last updated 1 years ago.

3d computational-biology computational-chemistry hacktoberfest htmlwidgets molecular-graphics molecular-modeling protein protein-structure visualization

34.7 match 90 stars 6.35 score 166 scripts 1 dependents

paulgovan

AutoDeskR:An Interface to the 'AutoDesk' 'API' Platform

An interface to the 'AutoDesk' 'API' Platform including the Authentication 'API' for obtaining authentication to the 'AutoDesk' Forge Platform, Data Management 'API' for managing data across the platform's cloud services, Design Automation 'API' for performing automated tasks on design files in the cloud, Model Derivative 'API' for translating design files into different formats, sending them to the viewer app, and extracting design data, and Viewer for rendering 2D and 3D models.

Maintained by Paul Govan. Last updated 6 months ago.

3d-models autodesk viewer

23.1 match 7 stars 6.13 score 16 scripts

dipterix

threeBrain:Your Advanced 3D Brain Visualization

A fast, interactive cross-platform, and easy to share 'WebGL'-based 3D brain viewer that visualizes 'FreeSurfer' and/or 'AFNI/SUMA' surfaces. The viewer widget can be either standalone or embedded into 'R-shiny' applications. The standalone version only require a web browser with 'WebGL2' support (for example, 'Chrome', 'Firefox', 'Safari'), and can be inserted into any websites. The 'R-shiny' support allows the 3D viewer to be dynamically generated from reactive user inputs. Please check the publication by Wang, Magnotti, Zhang, and Beauchamp (2023, <doi:10.1523/ENEURO.0328-23.2023>) for electrode localization. This viewer has been fully adopted by 'RAVE' <https://rave.wiki>, an interactive toolbox to analyze 'iEEG' data by Magnotti, Wang, and Beauchamp (2020, <doi:10.1016/j.neuroimage.2020.117341>). Please check citation("threeBrain") for details.

Maintained by Zhengjia Wang. Last updated 2 days ago.

brain ecog electroencephalography ieeg localization mri-brain neuroimaging template-brains

9.6 match 44 stars 8.24 score 38 scripts 1 dependents

insightsengineering

rtables:Reporting Tables

Reporting tables often have structure that goes beyond simple rectangular data. The 'rtables' package provides a framework for declaring complex multi-level tabulations and then applying them to data. This framework models both tabulation and the resulting tables as hierarchical, tree-like objects which support sibling sub-tables, arbitrary splitting or grouping of data in row and column dimensions, cells containing multiple values, and the concept of contextual summary computations. A convenient pipe-able interface is provided for declaring table layouts and the corresponding computations, and then applying them to data.

Maintained by Joe Zhu. Last updated 2 months ago.

pharmaceuticals tables

5.0 match 232 stars 13.65 score 238 scripts 17 dependents

nanxstats

ggsci:Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'

A collection of 'ggplot2' color palettes inspired by plots in scientific journals, data visualization libraries, science fiction movies, and TV shows.

Maintained by Nan Xiao. Last updated 9 months ago.

color-palettes data-visualization ggplot2 ggsci sci-fi scientific-journals visualization

3.5 match 680 stars 18.00 score 26k scripts 438 dependents

rstudio

rstudioapi:Safely Access the RStudio API

Access the RStudio API (if available) and provide informative error messages when it's not.

Maintained by Kevin Ushey. Last updated 4 months ago.

3.3 match 172 stars 18.81 score 3.6k scripts 2.1k dependents

thomasp85

shinyFiles:A Server-Side File System Viewer for Shiny

Provides functionality for client-side navigation of the server side file system in shiny apps. In case the app is running locally this gives the user direct access to the file system without the need to "download" files to a temporary location. Both file and folder selection as well as file saving is available.

Maintained by Thomas Lin Pedersen. Last updated 2 years ago.

filemanager shiny ui-components

4.7 match 199 stars 11.70 score 736 scripts 60 dependents

brry

berryFunctions:Function Collection Related to Plotting and Hydrology

Draw horizontal histograms, color scattered points by 3rd dimension, enhance date- and log-axis plots, zoom in X11 graphics, trace errors and warnings, use the unit hydrograph in a linear storage cascade, convert lists to data.frames and arrays, fit multiple functions.

Maintained by Berry Boessenkool. Last updated 1 months ago.

5.3 match 13 stars 9.43 score 350 scripts 16 dependents

rstudio

shiny:Web Application Framework for R

Makes it incredibly easy to build interactive web applications with R. Automatic "reactive" binding between inputs and outputs and extensive prebuilt widgets make it possible to build beautiful, responsive, and powerful applications with minimal effort.

Maintained by Winston Chang. Last updated 13 days ago.

reactive rstudio shiny web-app web-development

2.3 match 5.4k stars 21.28 score 108k scripts 1.8k dependents

ropensci

phonfieldwork:Linguistic Phonetic Fieldwork Tools

There are a lot of different typical tasks that have to be solved during phonetic research and experiments. This includes creating a presentation that will contain all stimuli, renaming and concatenating multiple sound files recorded during a session, automatic annotation in 'Praat' TextGrids (this is one of the sound annotation standards provided by 'Praat' software, see Boersma & Weenink 2020 <https://www.fon.hum.uva.nl/praat/>), creating an html table with annotations and spectrograms, and converting multiple formats ('Praat' TextGrid, 'ELAN', 'EXMARaLDA', 'Audacity', subtitles '.srt', and 'FLEx' flextext). All of these tasks can be solved by a mixture of different tools (any programming language has programs for automatic renaming, and Praat contains scripts for concatenating and renaming files, etc.). 'phonfieldwork' provides a functionality that will make it easier to solve those tasks independently of any additional tools. You can also compare the functionality with other packages: 'rPraat' <https://CRAN.R-project.org/package=rPraat>, 'textgRid' <https://CRAN.R-project.org/package=textgRid>.

Maintained by George Moroz. Last updated 8 months ago.

audacity eaf elan exb exmaralda fieldwork flextext phonetics phonology praat srt-subtitles textgrid

7.0 match 20 stars 6.68 score 20 scripts

robson-fernandes

bnviewer:Bayesian Networks Interactive Visualization and Explainable Artificial Intelligence

Bayesian networks provide an intuitive framework for probabilistic reasoning and its graphical nature can be interpreted quite clearly. Graph based methods of machine learning are becoming more popular because they offer a richer model of knowledge that can be understood by a human in a graphical format. The 'bnviewer' is an R Package that allows the interactive visualization of Bayesian Networks. The aim of this package is to improve the Bayesian Networks visualization over the basic and static views offered by existing packages.

Maintained by Robson Fernandes. Last updated 5 years ago.

bayesian-inference bayesian-network bayesian-networks probabilistic-graphical-models

9.2 match 7 stars 4.86 score 69 scripts 1 dependents

jonclayden

RNifti:Fast R and C++ Access to NIfTI Images

Provides very fast read and write access to images stored in the NIfTI-1, NIfTI-2 and ANALYZE-7.5 formats, with seamless synchronisation of in-memory image objects between compiled C and interpreted R code. Also provides a simple image viewer, and a C/C++ API that can be used by other packages. Not to be confused with 'RNiftyReg', which performs image registration and applies spatial transformations.

Maintained by Jon Clayden. Last updated 23 days ago.

medical-imaging nifti-format zlib cpp

4.3 match 48 stars 10.43 score 522 scripts 56 dependents

doehm

survivoR:Data from all Seasons of Survivor (US) TV Series in Tidy Format

Datasets detailing the results, castaways, and events of each season of Survivor for the US, Australia, South Africa, New Zealand, and the UK. This includes details on the cast, voting history, immunity and reward challenges, jury votes, boot order, advantage details, and episode ratings. Use this for analysis of trends and statistics of the game.

Maintained by Daniel Oehm. Last updated 2 days ago.

6.0 match 73 stars 7.08 score 94 scripts

bioc

ShortRead:FASTQ input and manipulation

This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. The package also contains legacy support for early single-end, ungapped alignment formats.

Maintained by Bioconductor Package Maintainer. Last updated 5 months ago.

dataimport sequencing qualitycontrol bioconductor-package core-package zlib cpp

3.3 match 8 stars 12.08 score 1.8k scripts 49 dependents

acorg

Racmacs:Antigenic Cartography Macros

A toolkit for making antigenic maps from immunological assay data, in order to quantify and visualize antigenic differences between different pathogen strains as described in Smith et al. (2004) <doi:10.1126/science.1097211> and used in the World Health Organization influenza vaccine strain selection process. Additional functions allow for the diagnostic evaluation of antigenic maps and an interactive viewer is provided to explore antigenic relationships amongst several strains and incorporate the visualization of associated genetic information.

Maintained by Sam Wilks. Last updated 9 months ago.

openblas cpp openmp

4.5 match 21 stars 8.06 score 362 scripts

insightsengineering

teal.modules.general:General Modules for 'teal' Applications

Prebuilt 'shiny' modules containing tools for viewing data, visualizing data, understanding missing and outlier values within your data and performing simple data analysis. This extends 'teal' framework that supports reproducible research and analysis.

Maintained by Dawid Kaledkowski. Last updated 16 days ago.

general-purpose modules nest shiny

3.7 match 12 stars 9.76 score 71 scripts

nowosad

rcartocolor:'CARTOColors' Palettes

Provides color schemes for maps and other graphics designed by 'CARTO' as described at <https://carto.com/carto-colors/>. It includes four types of palettes: aggregation, diverging, qualitative, and quantitative.

Maintained by Jakub Nowosad. Last updated 5 months ago.

color-palette ggplot2 visualization

4.0 match 111 stars 8.64 score 1.4k scripts 1 dependents

aaronolsen

svgViewR:3D Animated Interactive Visualizations Using SVG and WebGL

Creates 3D animated, interactive visualizations that can be viewed in a web browser.

Maintained by Aaron M Olsen. Last updated 2 years ago.

cpp

15.1 match 2.12 score 22 scripts 2 dependents

bioc

igvR:igvR: integrative genomics viewer

Access to igv.js, the Integrative Genomics Viewer running in a web browser.

Maintained by Arkadiusz Gladki. Last updated 5 months ago.

visualization thirdpartyclient genomebrowsers

3.7 match 43 stars 8.31 score 118 scripts

bioc

Biobase:Biobase: Base functions for Bioconductor

Functions that are needed by many other packages or which replace R functions.

Maintained by Bioconductor Package Maintainer. Last updated 5 months ago.

infrastructure bioconductor-package core-package

1.8 match 9 stars 16.45 score 6.6k scripts 1.8k dependents

andrisignorell

DescTools:Tools for Descriptive Statistics

A collection of miscellaneous basic statistic functions and convenience wrappers for efficiently describing data. The author's intention was to create a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. The package contains furthermore functions to produce documents using MS Word (or PowerPoint) and functions to import data from Excel. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in absence of convincing alternatives). The 'BigCamelCase' style was consequently applied to functions borrowed from contributed R packages as well.

Maintained by Andri Signorell. Last updated 9 hours ago.

fortran cpp

1.8 match 87 stars 16.70 score 7.7k scripts 99 dependents

ohdsi

ParallelLogger:Support for Parallel Computation, Logging, and Function Automation

Support for parallel computation with progress bar, and option to stop or proceed on errors. Also provides logging to console and disk, and the logging persists in the parallel threads. Additional functions support function call automation with delayed execution (e.g. for executing functions in parallel).

Maintained by Martijn Schuemie. Last updated 6 months ago.

hades

3.1 match 12 stars 9.18 score 87 scripts 11 dependents

rstudio

r2d3:Interface to 'D3' Visualizations

Suite of tools for using 'D3', a library for producing dynamic, interactive data visualizations. Supports translating objects into 'D3' friendly data structures, rendering 'D3' scripts, publishing 'D3' visualizations, incorporating 'D3' in R Markdown, creating interactive 'D3' applications with Shiny, and distributing 'D3' based 'htmlwidgets' in R packages.

Maintained by Nick Strayer. Last updated 3 years ago.

d3 r2d3 visualization

2.2 match 519 stars 11.88 score 498 scripts 10 dependents

kwb-r

kwb.utils:General Utility Functions Developed at KWB

This package contains some small helper functions that aim at improving the quality of code developed at Kompetenzzentrum Wasser gGmbH (KWB).

Maintained by Hauke Sonnenberg. Last updated 12 months ago.

3.5 match 8 stars 7.33 score 12 scripts 78 dependents

react-r

reactR:React Helpers

Make it easy to use 'React' in R with 'htmlwidget' scaffolds, helper dependency functions, an embedded 'Babel' 'transpiler', and examples.

Maintained by Kent Russell. Last updated 6 months ago.

html htmlwidgets javascript react reactjs web

1.8 match 414 stars 14.09 score 109 scripts 175 dependents

vandomed

tab:Create Summary Tables for Statistical Reports

Contains functions for creating various types of summary tables, e.g. comparing characteristics across levels of a categorical variable and summarizing fitted generalized linear models, generalized estimating equations, and Cox proportional hazards models. Functions are available to handle data from simple random samples as well as complex surveys.

Maintained by Dane R. Van Domelen. Last updated 4 years ago.

manuscripts reports reproducible-research statistics tables

3.6 match 2 stars 6.97 score 86 scripts 9 dependents

bioc

geomeTriD:A R/Bioconductor package for interactive 3D plot of epigenetic data or single cell data

geomeTriD (Three Dimensional Geometry Package) create interactive 3D plots using the GL library with the 'three.js' visualization library (https://threejs.org) or the rgl library. In addition to creating interactive 3D plots, the application also generates simplified models in 2D. These 2D models provide a more straightforward visual representation, making it easier to analyze and interpret the data quickly. This functionality ensures that users have access to both detailed three-dimensional visualizations and more accessible two-dimensional views, catering to various analytical needs.

Maintained by Jianhong Ou. Last updated 1 months ago.

visualization

4.9 match 1 stars 5.10 score 7 scripts

fkeck

bioseq:A Toolbox for Manipulating Biological Sequences

Classes and functions to work with biological sequences (DNA, RNA and amino acid sequences). Implements S3 infrastructure to work with biological sequences as described in Keck (2020) <doi:10.1111/2041-210X.13490>. Provides a collection of functions to perform biological conversion among classes (transcription, translation) and basic operations on sequences (detection, selection and replacement based on positions or patterns). The package also provides functions to import and export sequences from and to other package formats.

Maintained by Francois Keck. Last updated 3 years ago.

3.6 match 22 stars 6.72 score 80 scripts 1 dependents

unhcr-dataviz

unhcrthemes:UNHCR 'ggplot2' Theme and Colour Palettes

A 'ggplot2' theme and color palettes following the United Nations High Commissioner for Refugees (UNHCR) Data Visualization Guidelines recommendations.

Maintained by Cédric Vidonne. Last updated 2 months ago.

ggplot2 ggplot2-scales ggplot2-themes

3.8 match 27 stars 6.44 score 102 scripts

gyang274

gbp:A Bin Packing Problem Solver

Basic infrastructure and several algorithms for 1d-4d bin packing problem. This package provides a set of c-level classes and solvers for 1d-4d bin packing problem, and an r-level solver for 4d bin packing problem, which is a wrapper over the c-level 4d bin packing problem solver. The 4d bin packing problem solver aims to solve bin packing problem, a.k.a container loading problem, with an additional constraint on weight. Given a set of rectangular-shaped items, and a set of rectangular-shaped bins with weight limit, the solver looks for an orthogonal packing solution such that minimizes the number of bins and maximize volume utilization. Each rectangular-shaped item i = 1, .. , n is characterized by length l_i, depth d_i, height h_i, and weight w_i, and each rectangular-shaped bin j = 1, .. , m is specified similarly by length l_j, depth d_j, height h_j, and weight limit w_j. The item can be rotated into any orthogonal direction, and no further restrictions implied.

Maintained by Guang Yang. Last updated 6 years ago.

3d 3d-bin-packing 3d-bin-packing-problem cpp packing-algorithm cpp

4.6 match 34 stars 5.23 score 8 scripts

davidgohel

ggiraph:Make 'ggplot2' Graphics Interactive

Create interactive 'ggplot2' graphics using 'htmlwidgets'.

Maintained by David Gohel. Last updated 3 months ago.

libpng cpp

1.7 match 819 stars 14.39 score 4.1k scripts 34 dependents

bioc

igvShiny:igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)

This package is a wrapper of Integrative Genomics Viewer (IGV). It comprises an htmlwidget version of IGV. It can be used as a module in Shiny apps.

Maintained by Arkadiusz Gladki. Last updated 5 months ago.

software shinyapps sequencing coverage

3.2 match 37 stars 7.40 score 120 scripts

brodieg

diffobj:Diffs for R Objects

Generate a colorized diff of two R objects for an intuitive visualization of their differences.

Maintained by Brodie Gaslam. Last updated 3 years ago.

diff

1.8 match 232 stars 13.12 score 107 scripts 486 dependents

juliainterop

JuliaCall:Seamless Integration Between R and 'Julia'

Provides an R interface to 'Julia', which is a high-level, high-performance dynamic programming language for numerical computing, see <https://julialang.org/> for more information. It provides a high-level interface as well as a low-level interface. Using the high level interface, you could call any 'Julia' function just like any R function with automatic type conversion. Using the low level interface, you could deal with C-level SEXP directly while enjoying the convenience of using a high-level programming language like 'Julia'.

Maintained by Changcheng Li. Last updated 3 months ago.

julia cpp

1.9 match 270 stars 12.33 score 380 scripts 8 dependents

pcruniversum

shinyMolBio:Molecular Biology Visualization Tools for 'Shiny' Apps

Interactive visualization of 'RDML' files via 'shiny' apps. Package provides (1) PCR plate interface with ability to select individual tubes; (2) amplification/melting plots with fast hiding and highlighting individual curves; (3) 2D allelic discrimination plot.

Maintained by Konstantin A. Blagodatskikh. Last updated 4 months ago.

pcr qpcr rdml shiny visualization

5.6 match 6 stars 4.10 score 14 scripts

md-anderson-bioinformatics

NGCHM:Next Generation Clustered Heat Maps

Next-Generation Clustered Heat Maps (NG-CHMs) allow for dynamic exploration of heat map data in a web browser. 'NGCHM' allows users to create both stand-alone HTML files containing a Next-Generation Clustered Heat Map, and .ngchm files to view in the NG-CHM viewer. See Ryan MC, Stucky M, et al (2020) <doi:10.12688/f1000research.20590.2> for more details.

Maintained by Mary A Rohrdanz. Last updated 9 days ago.

heatmap nci-itcr ng-chm

4.1 match 9 stars 5.48 score 28 scripts

ropensci

RefManageR:Straightforward 'BibTeX' and 'BibLaTeX' Bibliography Management

Provides tools for importing and working with bibliographic references. It greatly enhances the 'bibentry' class by providing a class 'BibEntry' which stores 'BibTeX' and 'BibLaTeX' references, supports 'UTF-8' encoding, and can be easily searched by any field, by date ranges, and by various formats for name lists (author by last names, translator by full names, etc.). Entries can be updated, combined, sorted, printed in a number of styles, and exported. 'BibTeX' and 'BibLaTeX' '.bib' files can be read into 'R' and converted to 'BibEntry' objects. Interfaces to 'NCBI Entrez', 'CrossRef', and 'Zotero' are provided for importing references and references can be created from locally stored 'PDF' files using 'Poppler'. Includes functions for citing and generating a bibliography with hyperlinks for documents prepared with 'RMarkdown' or 'RHTML'.

Maintained by Mathew W. McLean. Last updated 4 months ago.

peer-reviewed

1.8 match 115 stars 12.06 score 2.3k scripts 16 dependents

winvector

wrapr:Wrap R Tools for Debugging and Parametric Programming

Tools for writing and debugging R code. Provides: '%.>%' dot-pipe (an 'S3' configurable pipe), unpack/to (R style multiple assignment/return), 'build_frame()'/'draw_frame()' ('data.frame' example tools), 'qc()' (quoting concatenate), ':=' (named map builder), 'let()' (converts non-standard evaluation interfaces to parametric standard evaluation interfaces, inspired by 'gtools::strmacro()' and 'base::bquote()'), and more.

Maintained by John Mount. Last updated 2 years ago.

1.8 match 137 stars 11.11 score 390 scripts 12 dependents

ncss-tech

soilDB:Soil Database Interface

A collection of functions for reading soil data from U.S. Department of Agriculture Natural Resources Conservation Service (USDA-NRCS) and National Cooperative Soil Survey (NCSS) databases.

Maintained by Andrew Brown. Last updated 7 days ago.

kssl nasis nrcs soil soil-data-access soil-survey soilweb sql usda

1.8 match 87 stars 11.34 score 1.0k scripts 1 dependents

gdemin

expss:Tables, Labels and Some Useful Functions from Spreadsheets and 'SPSS' Statistics

Package computes and displays tables with support for 'SPSS'-style labels, multiple and nested banners, weights, multiple-response variables and significance testing. There are facilities for nice output of tables in 'knitr', 'Shiny', '*.xlsx' files, R and 'Jupyter' notebooks. Methods for labelled variables add value labels support to base R functions and to some functions from other packages. Additionally, the package brings popular data transformation functions from 'SPSS' Statistics and 'Excel': 'RECODE', 'COUNT', 'COUNTIF', 'VLOOKUP' and etc. These functions are very useful for data processing in marketing research surveys. Package intended to help people to move data processing from 'Excel' and 'SPSS' to R.

Maintained by Gregory Demin. Last updated 11 months ago.

excel labels labels-support msexcel pivot-tables recode spss spss-statistics tables variable-labels vlookup

1.7 match 84 stars 11.00 score 1.8k scripts 4 dependents

kurthornik

NLP:Natural Language Processing Infrastructure

Basic classes and methods for Natural Language Processing.

Maintained by Kurt Hornik. Last updated 4 months ago.

2.0 match 6 stars 9.37 score 1.0k scripts 127 dependents

dslc-io

tidytuesdayR:Access the Weekly 'TidyTuesday' Project Dataset

'TidyTuesday' is a project by the 'Data Science Learning Community' in which they post a weekly dataset in a public data repository (<https://github.com/rfordatascience/tidytuesday>) for people to analyze and visualize. This package provides the tools to easily download this data and the description of the source.

Maintained by Jon Harmon. Last updated 25 days ago.

1.9 match 77 stars 9.86 score 3.0k scripts

bioc

epivizrChart:R interface to epiviz web components

This package provides an API for interactive visualization of genomic data using epiviz web components. Objects in R/BioConductor can be used to generate interactive R markdown/notebook documents or can be visualized in the R Studio's default viewer.

Maintained by Hector Corrada Bravo. Last updated 5 months ago.

visualization gui

3.9 match 4.68 score 12 scripts

yonicd

texPreview:Compile and Preview Snippets of 'LaTeX'

Compile snippets of 'LaTeX' directly into images from the R console to view in the 'RStudio' viewer pane, Shiny apps and 'RMarkdown' documents.

Maintained by Jonathan Sidi. Last updated 1 years ago.

imagemagick latex rmarkdown

2.3 match 52 stars 7.83 score 72 scripts

r-lidar

lidRviewer:3D point cloud viewer

An advanced point cloud viewer designed to fluidly display hundreds of millions of points while using minimal memory. This package is intended as a replacement for rgl in lidR when the point cloud size exceeds what rgl can handle.

Maintained by Jean-Romain Roussel. Last updated 3 months ago.

libsdl2 libglu libglvnd cpp

3.6 match 84 stars 4.83 score 7 scripts

emmanuelcharpentier

patchSynctex:Communication Between Editor and Viewer for Literate Programs

This utility eases the debugging of literate documents ('noweb' files) by patching the synchronization information (the '.synctex(.gz)' file) produced by 'pdflatex' with concordance information produced by 'Sweave' or 'knitr' and 'Sweave' or 'knitr' ; this allows for bilateral communication between a text editor (visualizing the 'noweb' source) and a viewer (visualizing the resultant 'PDF'), thus bypassing the intermediate 'TeX' file.

Maintained by Emmanuel Charpentier. Last updated 8 years ago.

5.3 match 1 stars 3.18 score 30 scripts

samuel-marsh

scCustomize:Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing

Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'. 'scCustomize' aims to provide 1) Customized visualizations for aid in ease of use and to create more aesthetic and functional visuals. 2) Improve speed/reproducibility of common tasks/pieces of code in scRNA-seq analysis with a single or group of functions. For citation please use: Marsh SE (2021) "Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing" <doi:10.5281/zenodo.5706430> RRID:SCR_024675.

Maintained by Samuel Marsh. Last updated 3 months ago.

customization ggplot2 scrna-seq seurat single-cell single-cell-genomics single-cell-rna-seq visualization

1.9 match 242 stars 8.75 score 1.1k scripts

bioc

xenLite:Simple classes and methods for managing Xenium datasets

Define a relatively light class for managing Xenium data using Bioconductor. Address use of parquet for coordinates, SpatialExperiment for assay and sample data. Address serialization and use of cloud storage.

Maintained by Vincent Carey. Last updated 5 months ago.

infrastructure

3.7 match 1 stars 4.48 score 4 scripts

bioc

cytoviewer:An interactive multi-channel image viewer for R

This R package supports interactive visualization of multi-channel images and segmentation masks generated by imaging mass cytometry and other highly multiplexed imaging techniques using shiny. The cytoviewer interface is divided into image-level (Composite and Channels) and cell-level visualization (Masks). It allows users to overlay individual images with segmentation masks, integrates well with SingleCellExperiment and SpatialExperiment objects for metadata visualization and supports image downloads.

Maintained by Lasse Meyer. Last updated 5 months ago.

immunooncology software singlecell onechannel twochannel multichannel spatial dataimport bioconductor imaging shiny visualization

2.9 match 7 stars 5.50 score 15 scripts

great-northern-diver

loon:Interactive Statistical Data Visualization

An extendable toolkit for interactive data visualization and exploration.

Maintained by R. Wayne Oldford. Last updated 2 years ago.

data-analysis data-science data-visualization exploratory-analysis exploratory-data-analysis high-dimensional-data interactive-graphics interactive-visualizations loon python statistical-analysis statistical-graphics statistics tcl-extension tk

1.8 match 48 stars 9.00 score 93 scripts 5 dependents

open-eo

openeo:Client Interface for 'openEO' Servers

Access data and processing functionalities of 'openEO' compliant back-ends in R.

Maintained by Florian Lahn. Last updated 2 months ago.

openeo openeo-user

1.8 match 64 stars 8.65 score 128 scripts

radiant-rstats

radiant:Business Analytics using R and Shiny

A platform-independent browser-based interface for business analytics in R, based on the shiny package. The application combines the functionality of 'radiant.data', 'radiant.design', 'radiant.basics', 'radiant.model', and 'radiant.multivariate'.

Maintained by Vincent Nijs. Last updated 10 months ago.

1.9 match 460 stars 8.03 score 228 scripts

etiennebacher

altdoc:Package Documentation Websites with 'Quarto', 'Docsify', 'Docute', or 'MkDocs'

This is a simple and powerful package to create, render, preview, and deploy documentation websites for 'R' packages. It is a lightweight and flexible alternative to 'pkgdown', with support for many documentation generators, including 'Quarto', 'Docute', 'Docsify', and 'MkDocs'.

Maintained by Etienne Bacher. Last updated 2 months ago.

1.9 match 72 stars 7.88 score 3 scripts

dkaschek

dMod:Dynamic Modeling and Parameter Estimation in ODE Models

The framework provides functions to generate ODEs of reaction networks, parameter transformations, observation functions, residual functions, etc. The framework follows the paradigm that derivative information should be used for optimization whenever possible. Therefore, all major functions produce and can handle expressions for symbolic derivatives.

Maintained by Daniel Kaschek. Last updated 10 days ago.

1.8 match 20 stars 8.35 score 251 scripts

radiant-rstats

radiant.data:Data Menu for Radiant: Business Analytics using R and Shiny

The Radiant Data menu includes interfaces for loading, saving, viewing, visualizing, summarizing, transforming, and combining data. It also contains functionality to generate reproducible reports of the analyses conducted in the application.

Maintained by Vincent Nijs. Last updated 5 months ago.

1.8 match 54 stars 8.30 score 146 scripts 6 dependents

dipterix

dipsaus:A Dipping Sauce for Data Analysis and Visualizations

Works as an "add-on" to packages like 'shiny', 'future', as well as 'rlang', and provides utility functions. Just like dipping sauce adding flavors to potato chips or pita bread, 'dipsaus' for data analysis and visualizations adds handy functions and enhancements to popular packages. The goal is to provide simple solutions that are frequently asked for online, such as how to synchronize 'shiny' inputs without freezing the app, or how to get memory size on 'Linux' or 'MacOS' system. The enhancements roughly fall into these four categories: 1. 'shiny' input widgets; 2. high-performance computing using the 'future' package; 3. modify R calls and convert among numbers, strings, and other objects. 4. utility functions to get system information such like CPU chip-set, memory limit, etc.

Maintained by Zhengjia Wang. Last updated 5 days ago.

cpp

1.8 match 13 stars 7.90 score 85 scripts 3 dependents

cardiomoon

ztable:Zebra-Striped Tables in LaTeX and HTML Formats

Makes zebra-striped tables (tables with alternating row colors) in LaTeX and HTML formats easily from a data.frame, matrix, lm, aov, anova, glm, coxph, nls, fitdistr, mytable and cbind.mytable objects.

Maintained by Keon-Woong Moon. Last updated 2 years ago.

1.8 match 21 stars 7.90 score 212 scripts 2 dependents

cwatson

brainGraph:Graph Theory Analysis of Brain MRI Data

A set of tools for performing graph theory analysis of brain MRI data. It works with data from a Freesurfer analysis (cortical thickness, volumes, local gyrification index, surface area), diffusion tensor tractography data (e.g., from FSL) and resting-state fMRI data (e.g., from DPABI). It contains a graphical user interface for graph visualization and data exploration, along with several functions for generating useful figures.

Maintained by Christopher G. Watson. Last updated 1 years ago.

brain-connectivity brain-imaging complex-networks connectome connectomics fmri graph-theory mri network-analysis neuroimaging neuroscience statistics tractography

1.8 match 188 stars 7.86 score 107 scripts 3 dependents

kanaries

GWalkR:Interactive Exploratory Data Analysis Tool

Simplify your R data analysis and data visualization workflow by turning your data frame into an interactive 'Tableau'-like interface, leveraging the 'graphic-walker' JavaScript library and the 'htmlwidgets' package.

Maintained by Yue Yu. Last updated 2 months ago.

data-visualization ggplot2 tableau-alternative visualization

1.9 match 446 stars 7.08 score 45 scripts

craddm

eegUtils:Utilities for Electroencephalographic (EEG) Analysis

Electroencephalography data processing and visualization tools. Includes import functions for 'BioSemi' (.BDF), 'Neuroscan' (.CNT), 'Brain Vision Analyzer' (.VHDR), 'EEGLAB' (.set) and 'Fieldtrip' (.mat). Many preprocessing functions such as referencing, epoching, filtering, and ICA are available. There are a variety of visualizations possible, including timecourse and topographical plotting.

Maintained by Matt Craddock. Last updated 5 months ago.

eeg eeg-analysis eeg-data eeg-signals eeg-signals-processing openblas cpp openmp

2.0 match 106 stars 6.54 score 82 scripts

coolbutuseless

emphatic:Exploratory Analysis of Tabular Data using Colour Highlighting

Tools for exploratory analysis of tabular data using colour highlighting. Highlighting is displayed in any console supporting 'ANSI' colours, and can be converted to 'HTML', 'typst', 'latex' and 'SVG'. 'quarto' and 'rmarkdown' rendering are directly supported. It is also possible to add colour to regular expression matches and highlight differences between two arbitrary R objects.

Maintained by Mike Cheng. Last updated 3 months ago.

1.7 match 141 stars 7.55 score 12 scripts

yapus

imageviewer:Simple 'htmlwidgets' Image Viewer with WebGL Brightness/Contrast

Display a 2D-matrix data as a interactive zoomable gray-scale image viewer, providing tools for manual data inspection. The viewer window shows cursor guiding lines and a corresponding data slices for both axes at the current cursor position. A tool-bar allows adjusting image display brightness/contrast through WebGL filters and performing basic high-pass/low-pass filtering.

Maintained by Iakov Pustilnik. Last updated 6 years ago.

3.6 match 6 stars 3.48 score 2 scripts

tractor

tractor.base:Read, Manipulate and Visualise Magnetic Resonance Images

Functions for working with magnetic resonance images. Reading and writing of popular file formats (DICOM, Analyze, NIfTI-1, NIfTI-2, MGH); interactive and non-interactive visualisation; flexible image manipulation; metadata and sparse image handling.

Maintained by Jon Clayden. Last updated 10 days ago.

brain-imaging graph-algorithms parcellation tractography

1.8 match 28 stars 6.79 score 35 scripts 1 dependents

rstudio

connections:Integrates with the 'RStudio' Connections Pane and 'pins'

Enables 'DBI' compliant packages to integrate with the 'RStudio' connections pane, and the 'pins' package. It automates the display of schemata, tables, views, as well as the preview of the table's top 1000 records.

Maintained by Edgar Ruiz. Last updated 1 years ago.

connection-pane database-connection pins rstudio

1.9 match 57 stars 6.50 score 124 scripts 1 dependents

chop-cgtinformatics

REDCapTidieR:Extract 'REDCap' Databases into Tidy 'Tibble's

Convert 'REDCap' exports into tidy tables for easy handling of 'REDCap' repeat instruments and event arms.

Maintained by Richard Hanna. Last updated 1 months ago.

redcap redcap-api tidy-data

1.5 match 35 stars 8.08 score 36 scripts

cran

espadon:Easy Study of Patient DICOM Data in Oncology

Exploitation, processing and 2D-3D visualization of DICOM-RT files (structures, dosimetry, imagery) for medical physics and clinical research, in a patient-oriented perspective.

Maintained by Cathy Fontbonne. Last updated 1 months ago.

cpp

4.3 match 2.85 score

oobianom

r2resize:In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents

Automatic resizing toolbar for containers, images and tables. Various resizer or expandable container functionalities are also included. Most suitable to include in 'shiny', 'markdown' and 'quarto' documents.

Maintained by Obinna Obianom. Last updated 4 months ago.

card resize rmarkdown shiny

1.9 match 15 stars 6.44 score 23 scripts

modeloriented

modelStudio:Interactive Studio for Explanatory Model Analysis

Automate the explanatory analysis of machine learning predictive models. Generate advanced interactive model explanations in the form of a serverless HTML site with only one line of code. This tool is model-agnostic, therefore compatible with most of the black-box predictive models and frameworks. The main function computes various (instance and model-level) explanations and produces a customisable dashboard, which consists of multiple panels for plots with their short descriptions. It is possible to easily save the dashboard and share it with others. 'modelStudio' facilitates the process of Interactive Explanatory Model Analysis introduced in Baniecki et al. (2023) <doi:10.1007/s10618-023-00924-w>.

Maintained by Hubert Baniecki. Last updated 2 years ago.

ai explainable explainable-ai explainable-machine-learning explanatory-model-analysis human iml interactive interactivity interpretability interpretable interpretable-machine-learning learning machine model model-visualization visualization xai

1.5 match 330 stars 7.92 score 56 scripts

alun-thomas

rviewgraph:Animated Graph Layout Viewer

Provides 'Java' graphical user interfaces for viewing, manipulating and plotting graphs. Graphs may be directed or undirected.

Maintained by Alun Thomas. Last updated 2 years ago.

openjdk

5.1 match 2.30 score 3 scripts

nepem-ufsc

pliman:Tools for Plant Image Analysis

Tools for both single and batch image manipulation and analysis (Olivoto, 2022 <doi:10.1111/2041-210X.13803>) and phytopathometry (Olivoto et al., 2022 <doi:10.1007/S40858-021-00487-5>). The tools can be used for the quantification of leaf area, object counting, extraction of image indexes, shape measurement, object landmark identification, and Elliptical Fourier Analysis of object outlines (Claude (2008) <doi:10.1007/978-0-387-77789-4>). The package also provides a comprehensive pipeline for generating shapefiles with complex layouts and supports high-throughput phenotyping of RGB, multispectral, and hyperspectral orthomosaics. This functionality facilitates field phenotyping using UAV- or satellite-based imagery.

Maintained by Tiago Olivoto. Last updated 2 days ago.

openblas fftw3 cpp openmp

1.8 match 10 stars 6.68 score 476 scripts

patzaw

ReDaMoR:Relational Data Modeler

The aim of this package is to manipulate relational data models in R. It provides functions to create, modify and export data models in json format. It also allows importing models created with 'MySQL Workbench' (<https://www.mysql.com/products/workbench/>). These functions are accessible through a graphical user interface made with 'shiny'. Constraints such as types, keys, uniqueness and mandatory fields are automatically checked and corrected when editing a model. Finally, real data can be confronted to a model to check their compatibility.

Maintained by Patrice Godard. Last updated 23 days ago.

1.8 match 17 stars 6.24 score 17 scripts 1 dependents

radiant-rstats

radiant.model:Model Menu for Radiant: Business Analytics using R and Shiny

The Radiant Model menu includes interfaces for linear and logistic regression, naive Bayes, neural networks, classification and regression trees, model evaluation, collaborative filtering, decision analysis, and simulation. The application extends the functionality in 'radiant.data'.

Maintained by Vincent Nijs. Last updated 5 months ago.

1.8 match 19 stars 6.18 score 80 scripts 2 dependents

rubenarslan

rmdpartials:Partial 'rmarkdown' Documents to Prettify your Reports

Use 'rmarkdown' partials, also know as child documents in 'knitr', so you can make components for HTML, PDF, and Word documents. The package provides various helper functions to make certain functions easier. You may want to use this package, if you want to flexibly summarise objects using a combination of figures, tables, text, and HTML widgets. Unlike HTML widgets, the output is Markdown and can hence be turn into other output formats than HTML.

Maintained by Ruben Arslan. Last updated 5 years ago.

1.8 match 7 stars 5.88 score 12 scripts 6 dependents

cardiomoon

interpretCI:Estimate the Confidence Interval and Interpret Step by Step

Estimate confidence intervals for mean, proportion, mean difference for unpaired and paired samples and proportion difference. Plot the confidence intervals. Generate documents explaining the statistical result step by step.

Maintained by Keon-Woong Moon. Last updated 3 years ago.

1.8 match 4 stars 6.03 score 49 scripts

neilstats

ckbplotr:Create CKB Plots

ckbplotr provides functions to help create and style plots in R. It is being developed by, and primarily for, China Kadoorie Biobank researchers.

Maintained by Neil Wright. Last updated 2 months ago.

1.8 match 10 stars 5.87 score 37 scripts

bioc

ideal:Interactive Differential Expression AnaLysis

This package provides functions for an Interactive Differential Expression AnaLysis of RNA-sequencing datasets, to extract quickly and effectively information downstream the step of differential expression. A Shiny application encapsulates the whole package. Support for reproducibility of the whole analysis is provided by means of a template report which gets automatically compiled and can be stored/shared.

Maintained by Federico Marini. Last updated 3 months ago.

immunooncology geneexpression differentialexpression rnaseq sequencing visualization qualitycontrol gui genesetenrichment reportwriting shinyapps bioconductor differential-expression reproducible-research rna-seq rna-seq-analysis shiny user-friendly

1.5 match 29 stars 6.78 score 5 scripts

marekslenker

MorphoTools2:Multivariate Morphometric Analysis

Tools for multivariate analyses of morphological data, wrapped in one package, to make the workflow convenient and fast. Statistical and graphical tools provide a comprehensive framework for checking and manipulating input data, statistical analyses, and visualization of results. Several methods are provided for the analysis of raw data, to make the dataset ready for downstream analyses. Integrated statistical methods include hierarchical classification, principal component analysis, principal coordinates analysis, non-metric multidimensional scaling, and multiple discriminant analyses: canonical, stepwise, and classificatory (linear, quadratic, and the non-parametric k nearest neighbours). The philosophy of the package is described in Šlenker et al. 2022.

Maintained by Marek Šlenker. Last updated 6 months ago.

2.0 match 7 stars 5.02 score 9 scripts

radiant-rstats

radiant.basics:Basics Menu for Radiant: Business Analytics using R and Shiny

The Radiant Basics menu includes interfaces for probability calculation, central limit theorem simulation, comparing means and proportions, goodness-of-fit testing, cross-tabs, and correlation. The application extends the functionality in 'radiant.data'.

Maintained by Vincent Nijs. Last updated 10 months ago.

1.8 match 8 stars 5.56 score 79 scripts 3 dependents

aggregate-genius

periscope2:Enterprise Streamlined 'shiny' Application Framework Using 'bs4Dash'

A framework for building enterprise, scalable and UI-standardized 'shiny' applications. It brings enhanced features such as 'bootstrap' v4 <https://getbootstrap.com/docs/4.0/getting-started/introduction/>, additional and enhanced 'shiny' modules, customizable UI features, as well as an enhanced application file organization paradigm. This update allows developers to harness the ability to build powerful applications and enriches the 'shiny' developers' experience when building and maintaining applications.

Maintained by Mohammed Ali. Last updated 2 months ago.

periscope shiny

1.5 match 9 stars 6.49 score 34 scripts

kasperwelbers

tokenbrowser:Create Full Text Browsers from Annotated Token Lists

Create browsers for reading full texts from a token list format. Information obtained from text analyses (e.g., topic modeling, word scaling) can be used to annotate the texts.

Maintained by Kasper Welbers. Last updated 4 years ago.

cpp

1.8 match 7 stars 5.38 score 13 scripts 5 dependents

rjake

shinyobjects:Access Reactive Data Interactively

Troubleshooting reactive data in 'shiny' can be difficult. These functions will convert reactive data frames into functions and load all assigned objects into your local environment. If you create a dummy input object, as the function will suggest, you will be able to test your server and ui functions interactively.

Maintained by Jake Riley. Last updated 3 years ago.

1.8 match 22 stars 5.34 score 9 scripts

umr-amap

AMAPVox:LiDAR Data Voxelisation

Read, manipulate and write voxel spaces. Voxel spaces are read from text-based output files of the 'AMAPVox' software. 'AMAPVox' is a LiDAR point cloud voxelisation software that aims at estimating leaf area through several theoretical/numerical approaches. See more in the article Vincent et al. (2017) <doi:10.23708/1AJNMP> and the technical note Vincent et al. (2021) <doi:10.23708/1AJNMP>.

Maintained by Philippe Verley. Last updated 2 months ago.

1.5 match 15 stars 6.35 score 12 scripts

guildai

guildai:Track Machine Learning Experiments

'Guild AI' is an open-source tool for managing machine learning experiments. It's for scientists, engineers, and researchers who want to run scripts, compare results, measure progress, and automate machine learning workflows. 'Guild AI' is a light weight, external tool that runs locally. It works with any framework, doesn't require any changes to your code, or access to any web services. Users can easily record experiment metadata, track model changes, manage experiment artifacts, tune hyperparameters, and share results. 'Guild AI' combines features from 'Git', 'SQLite', and 'Make' to provide a lab notebook for machine learning.

Maintained by Tomasz Kalinowski. Last updated 2 years ago.

deep-learning keras machine-learning

2.0 match 19 stars 4.69 score 26 scripts

alphaprime7

normfluodbf:Cleans and Normalizes FLUOstar DBF and DAT Files from 'Liposome' Flux Assays

Cleans and Normalizes FLUOstar DBF and DAT Files obtained from liposome flux assays. Users should verify extended usage of the package on files from other assay types.

Maintained by Tingwei Adeck. Last updated 4 months ago.

1.9 match 1 stars 4.98 score 12 scripts

melff

RKernel:Yet another R kernel for Jupyter

Provides a kernel for Jupyter.

Maintained by Martin Elff. Last updated 15 days ago.

jupyter jupyter-kernel jupyter-kernels jupyter-notebook

2.0 match 38 stars 4.60 score

manueleleonelli

bnRep:A Repository of Bayesian Networks from the Academic Literature

A collection of Bayesian networks (discrete, Gaussian, and conditional linear Gaussian) collated from recent academic literature. The 'bnRep_summary' object provides an overview of the Bayesian networks in the repository and the package documentation includes details about the variables in each network. A Shiny app to explore the repository can be launched with 'bnRep_app()' and is available online at <https://manueleleonelli.shinyapps.io/bnRep>. For details see <https://github.com/manueleleonelli/bnRep>.

Maintained by Manuele Leonelli. Last updated 6 months ago.

1.8 match 5 stars 5.10 score 7 scripts

shabbychef

faroutman:Shiny Fractal Viewer

a shiny page to page around in fractals.

Maintained by Steven E. Pav. Last updated 2 years ago.

cpp

5.3 match 1.70 score 2 scripts

ropensci

mregions2:Access Data from Marineregions.org: Gazetteer & Data Products

Explore and retrieve marine geospatial data from the Marine Regions Gazetteer <https://marineregions.org/gazetteer.php?p=webservices> and the Marine Regions Data Products <https://marineregions.org/webservices.php>.

Maintained by Salvador Jesús Fernández Bejarano. Last updated 2 days ago.

1.5 match 9 stars 5.97 score 40 scripts

uribo

jpndistrict:Create Japanese Administration Area and Office Maps

Utilizing the data that Japanese administration area provided by the National Land Numerical Information download service (<https://nlftp.mlit.go.jp/ksj/index.html>). This package provide map data is based on the Digital Map 25000 (Map Image) published by Geospatial Information Authority of Japan (Approval No.603FY2017 information usage <https://www.gsi.go.jp>).

Maintained by Shinya Uryu. Last updated 4 years ago.

japan map visualization

2.3 match 22 stars 3.94 score 40 scripts

skranz

shinyEvents:Shiny wrapper with event handlers instead of reactivity

Shiny is a great package. Yet, for more complex projects, with much dynamic UI, I find it hard to write clean code with its reactivity paradigm. This package wraps shiny into a more traditional programming approach: - event handlers for input changes and button clicks - explicit update functions to change outputs - no explicit server function

Maintained by Sebastian Kranz. Last updated 2 years ago.

shiny

1.8 match 36 stars 4.99 score 26 scripts 7 dependents

radiant-rstats

radiant.multivariate:Multivariate Menu for Radiant: Business Analytics using R and Shiny

The Radiant Multivariate menu includes interfaces for perceptual mapping, factor analysis, cluster analysis, and conjoint analysis. The application extends the functionality in 'radiant.data'.

Maintained by Vincent Nijs. Last updated 7 days ago.

1.8 match 5 stars 4.76 score 38 scripts 1 dependents

cran

blsBandit:Data Viewer for Bureau of Labor Statistics Data

Allows users to easily visualize data from the BLS (United States of America Bureau of Labor Statistics) <https://www.bls.gov>. Currently unemployment data series U1-U6 are available. Not affiliated with the Bureau of Labor Statistics or United States Government.

Maintained by Jeremy Fitzpatrick. Last updated 2 years ago.

4.9 match 1.70 score

vlucet

rgrassdoc:Consult 'Grass GIS' Documentation in the RStudio Viewer or your Browser

A tool for easy viewing of the documentation of 'GRASS GIS' (see <https://grass.osgeo.org/>). Pages of the 'GRASS GIS' manuals found at <https://grass.osgeo.org/grass78/manuals/full_index.html> and at <https://grass.osgeo.org/grass78/manuals/addons/> can be viewed within the Viewer pane of 'RStudio', or be opened in the user's default browser.

Maintained by Valentin Lucet. Last updated 4 years ago.

documentation grass-gis rspatial

3.4 match 6 stars 2.48 score 5 scripts

radiant-rstats

radiant.design:Design Menu for Radiant: Business Analytics using R and Shiny

The Radiant Design menu includes interfaces for design of experiments, sampling, and sample size calculation. The application extends the functionality in 'radiant.data'.

Maintained by Vincent Nijs. Last updated 10 months ago.

1.8 match 11 stars 4.57 score 19 scripts 1 dependents

bioc

ADAMgui:Activity and Diversity Analysis Module Graphical User Interface

ADAMgui is a Graphical User Interface for the ADAM package. The ADAMgui package provides 2 shiny-based applications that allows the user to study the output of the ADAM package files through different plots. It's possible, for example, to choose a specific GFAG and observe the gene expression behavior with the plots created with the GFAGtargetUi function. Features such as differential expression and foldchange can be easily seen with aid of the plots made with GFAGpathUi function.

Maintained by Jose Luiz Rybarczyk Filho. Last updated 5 months ago.

genesetenrichment pathways kegg

2.4 match 3.30 score 1 scripts

ifellows

Deducer:A Data Analysis GUI for R

An intuitive, cross-platform graphical data analysis system. It uses menus and dialogs to guide the user efficiently through the data manipulation and analysis process, and has an excel like spreadsheet for easy data frame visualization and editing. Deducer works best when used with the Java based R GUI JGR, but the dialogs can be called from the command line. Dialogs have also been integrated into the Windows Rgui.

Maintained by Ian Fellows. Last updated 9 years ago.

openjdk

2.3 match 3.44 score 91 scripts 1 dependents

dipterix

ravedash:Dashboard System for Reproducible Visualization of 'iEEG'

Dashboard system to display the analysis results produced by 'RAVE' (Magnotti J.F., Wang Z., Beauchamp M.S. (2020), Reproducible analysis and visualizations of 'iEEG' <doi:10.1016/j.neuroimage.2020.117341>). Provides infrastructure to integrate customized analysis pipelines into dashboard modules, including file structures, front-end widgets, and event handlers.

Maintained by Zhengjia Wang. Last updated 5 months ago.

1.7 match 1 stars 4.35 score 45 scripts

lrberge

fplot:Automatic Distribution Graphs Using Formulas

Easy way to plot regular/weighted/conditional distributions by using formulas. The core of the package concerns distribution plots which are automatic: the many options are tailored to the data at hand to offer the nicest and most meaningful graphs possible -- with no/minimum user input. Further provide functions to plot conditional trends and box plots. See <https://lrberge.github.io/fplot/> for more information.

Maintained by Laurent Berge. Last updated 2 years ago.

cpp

1.7 match 16 stars 4.20 score 10 scripts

posit-dev

connectcreds:Manage 'OAuth' Credentials from 'Posit Connect'

A toolkit for making use of credentials mediated by 'Posit Connect'. It handles the details of communicating with the Connect API correctly, 'OAuth' token caching, and refresh behaviour.

Maintained by Aaron Jacobs. Last updated 1 months ago.

1.8 match 4 stars 4.00 score 1 scripts

talgalili

heatmaply:Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2'

Create interactive cluster 'heatmaps' that can be saved as a stand- alone HTML file, embedded in 'R Markdown' documents or in a 'Shiny' app, and available in the 'RStudio' viewer pane. Hover the mouse pointer over a cell to show details or drag a rectangle to zoom. A 'heatmap' is a popular graphical method for visualizing high-dimensional data, in which a table of numbers are encoded as a grid of colored cells. The rows and columns of the matrix are ordered to highlight patterns and are often accompanied by 'dendrograms'. 'Heatmaps' are used in many fields for visualizing observations, correlations, missing values patterns, and more. Interactive 'heatmaps' allow the inspection of specific value by hovering the mouse over a cell, as well as zooming into a region of the 'heatmap' by dragging a rectangle around the relevant area. This work is based on the 'ggplot2' and 'plotly.js' engine. It produces similar 'heatmaps' to 'heatmap.2' with the advantage of speed ('plotly.js' is able to handle larger size matrix), the ability to zoom from the 'dendrogram' panes, and the placing of factor variables in the sides of the 'heatmap'.

Maintained by Tal Galili. Last updated 8 months ago.

d3-heatmap dendextend dendrogram ggplot2 heatmap plotly

0.5 match 386 stars 14.21 score 2.0k scripts 45 dependents

nspyrison

cheem:Interactively Explore Local Explanations with the Radial Tour

Given a non-linear model, calculate the local explanation. We purpose view the data space, explanation space, and model residuals as ensemble graphic interactive on a shiny application. After an observation of interest is identified, the normalized variable importance of the local explanation is used as a 1D projection basis. The support of the local explanation is then explored by changing the basis with the use of the radial tour <doi:10.32614/RJ-2020-027>; <doi:10.1080/10618600.1997.10474754>.

Maintained by Nicholas Spyrison. Last updated 1 years ago.

1.5 match 2 stars 4.73 score 54 scripts

aravind-j

augmentedRCBD:Analysis of Augmented Randomised Complete Block Designs

Functions for analysis of data generated from experiments in augmented randomised complete block design according to Federer, W.T. (1961) <doi:10.2307/2527837>. Computes analysis of variance, adjusted means, descriptive statistics, genetic variability statistics etc. Further includes data visualization and report generation functions.

Maintained by J. Aravind. Last updated 5 months ago.

augmented-block augmented-design augmented-rcbd

1.1 match 7 stars 5.94 score 21 scripts

insightsengineering

teal:Exploratory Web Apps for Analyzing Clinical Trials Data

A 'shiny' based interactive exploration framework for analyzing clinical trials data. 'teal' currently provides a dynamic filtering facility and different data viewers. 'teal' 'shiny' applications are built using standard 'shiny' modules.

Maintained by Dawid Kaledkowski. Last updated 21 days ago.

clinical-trials nest shiny webapp

0.5 match 197 stars 12.68 score 176 scripts 5 dependents

egarpor

polykde:Polyspherical Kernel Density Estimation

Kernel density estimation on the polysphere, hypersphere, and circle. Includes functions for density estimation, regression estimation, ridge estimation, bandwidth selection, kernels, samplers, and homogeneity tests. Companion package to García-Portugués and Meilán-Vila (2024) <doi:10.48550/arXiv.2411.04166> and García-Portugués and Meilán-Vila (2023) <doi:10.1007/978-3-031-32729-2_4>.

Maintained by Eduardo García-Portugués. Last updated 1 months ago.

circular-statistics directional-statistics kernel-smoothing openblas cpp

2.0 match 3.00 score 5 scripts

cranhaven

rock:Reproducible Open Coding Kit

The Reproducible Open Coding Kit ('ROCK', and this package, 'rock') was developed to facilitate reproducible and open coding, specifically geared towards qualitative research methods. Although it is a general-purpose toolkit, three specific applications have been implemented, specifically an interface to the 'rENA' package that implements Epistemic Network Analysis ('ENA'), means to process notes from Cognitive Interviews ('CIs'), and means to work with decentralized construct taxonomies ('DCTs'). The 'ROCK' and this 'rock' package are described in the ROCK book <https://rockbook.org> and more information, such as tutorials, is available at <https://rock.science>.

Maintained by Gjalt-Jorn Peters. Last updated 8 days ago.

archived packages r-universe

1.8 match 5 stars 3.40 score

tjmahr

notestar:Notebooks Using 'Targets' and 'Bookdown'

'Targets' is an R package for dependency and build management in data analysis projects. This package provides a set of targets and project infrastructure to create 'bookdown'-based notebooks using 'targets'.

Maintained by Tristan Mahr. Last updated 2 months ago.

bookdown knitr pandoc rmarkdown targets

1.8 match 30 stars 3.18 score 7 scripts

nx10

httpgd:A 'HTTP' Server Graphics Device

A graphics device for R that is accessible via network protocols. This package was created to make it easier to embed live R graphics in integrated development environments and other applications. The included 'HTML/JavaScript' client (plot viewer) aims to provide a better overall user experience when dealing with R graphics. The device asynchronously serves graphics via 'HTTP' and 'WebSockets'.

Maintained by Florian Rupprecht. Last updated 23 hours ago.

cpp

0.5 match 428 stars 11.01 score 280 scripts 1 dependents

ropensci

nasapower:NASA POWER API Client

An API client for NASA POWER global meteorology, surface solar energy and climatology data API. POWER (Prediction Of Worldwide Energy Resources) data are freely available for download with varying spatial resolutions dependent on the original data and with several temporal resolutions depending on the POWER parameter and community. This work is funded through the NASA Earth Science Directorate Applied Science Program. For more on the data themselves, the methodologies used in creating, a web- based data viewer and web access, please see <https://power.larc.nasa.gov/>.

Maintained by Adam H. Sparks. Last updated 11 days ago.

nasa meteorological-data weather global weather-data meteorology nasa-power agroclimatology earth-science data-access climate-data agroclimatology-data weather-variables

0.5 match 101 stars 9.98 score 137 scripts 3 dependents

yonicd

slickR:Create Interactive Carousels with the 'JavaScript' 'Slick' Library

Create and customize interactive carousels using the 'Slick' 'JavaScript' library and the 'htmlwidgets' package. The carousels can contain plots produced in R, images, 'iframes', videos and other 'htmlwidgets'. These carousels can be created directly from the R console, and viewed in the 'RStudio' internal viewer, in 'Shiny' apps and R Markdown documents.

Maintained by Jonathan Sidi. Last updated 1 years ago.

htmlwidgets javascript slick

0.5 match 160 stars 9.37 score 199 scripts 1 dependents

shosaco

vistime:Pretty Timelines in R

A library for creating time based charts, like Gantt or timelines. Possible outputs include 'ggplot2' diagrams, 'plotly.js' graphs, 'Highcharts.js' widgets and data.frames. Results can be used in the 'RStudio' viewer pane, in 'RMarkdown' documents or in Shiny apps. In the interactive outputs created by vistime() and hc_vistime(), you can interact with the plot using mouse hover or zoom.

Maintained by Sandro Raabe. Last updated 6 months ago.

charts timelines

0.5 match 174 stars 9.37 score 142 scripts 1 dependents

gustavo039

Mmcsd:Modeling Complex Longitudinal Data in a Quick and Easy Way

Matching longitudinal methodology models with complex sampling design. It fits fixed and random effects models and covariance structured models so far. It also provides tools to perform statistical tests considering these specifications as described in : Pacheco, P. H. (2021). "Modeling complex longitudinal data in R: development of a statistical package." <https://repositorio.ufjf.br/jspui/bitstream/ufjf/13437/1/pedrohenriquedemesquitapacheco.pdf>.

Maintained by Pedro Pacheco. Last updated 2 years ago.

1.7 match 2.70 score 3 scripts

gadenbuie

xaringanExtra:Extras and Extensions for 'xaringan' Slides

Extras and extensions for 'xaringan' slides. Navigate your slides with tile view. Make your slides editable, live! Announce slide changes with subtle tones. Animate slide transitions with 'animate.css'. Add tabbed panels to slides with 'panelset'. Use the 'Tachyons CSS' utility toolkit for rapid slide development. Scribble on your slides. Add a copy button to your code chunks with 'clipboard'. Add a logo or top or bottom banner to every slide. Broadcast slides to stay in sync with remote viewers. Include yourself in your slides with 'webcam'. Plus a whole lot more!

Maintained by Garrick Aden-Buie. Last updated 10 months ago.

remarkjs rmarkdown slides tabs xaringan xaringan-slides

0.5 match 450 stars 8.41 score 1.9k scripts 1 dependents

consbiol-unibern

SDMtune:Species Distribution Model Selection

User-friendly framework that enables the training and the evaluation of species distribution models (SDMs). The package implements functions for data driven variable selection and model tuning and includes numerous utilities to display the results. All the functions used to select variables or to tune model hyperparameters have an interactive real-time chart displayed in the 'RStudio' viewer pane during their execution.

Maintained by Sergio Vignali. Last updated 3 months ago.

hyperparameter-tuning species-distribution-modelling variable-selection cpp

0.5 match 25 stars 7.37 score 155 scripts

nvelden

NGLVieweR:Interactive 3D Visualization of Molecular Structures

Provides an 'htmlwidgets' <https://www.htmlwidgets.org/> interface to 'NGL.js' <http://nglviewer.org/ngl/api/>. 'NGLvieweR' can be used to visualize and interact with protein databank ('PDB') and structural files in R and Shiny applications. It includes a set of API functions to manipulate the viewer after creation in Shiny.

Maintained by Niels van der Velden. Last updated 4 months ago.

ngl nglviewer pdb protein-data-bank shiny shiny-applications

0.5 match 47 stars 7.19 score 55 scripts 1 dependents

sahirbhatnagar

manhattanly:Interactive Q-Q and Manhattan Plots Using 'plotly.js'

Create interactive manhattan, Q-Q and volcano plots that are usable from the R console, in 'Dash' apps, in the 'RStudio' viewer pane, in 'R Markdown' documents, and in 'Shiny' apps. Hover the mouse pointer over a point to show details or drag a rectangle to zoom. A manhattan plot is a popular graphical method for visualizing results from high-dimensional data analysis such as a (epi)genome wide association study (GWAS or EWAS), in which p-values, Z-scores, test statistics are plotted on a scatter plot against their genomic position. Manhattan plots are used for visualizing potential regions of interest in the genome that are associated with a phenotype. Interactive manhattan plots allow the inspection of specific value (e.g. rs number or gene name) by hovering the mouse over a cell, as well as zooming into a region of the genome (e.g. a chromosome) by dragging a rectangle around the relevant area. This work is based on the 'qqman' package and the 'plotly.js' engine. It produces similar manhattan and Q-Q plots as the 'manhattan' and 'qq' functions in the 'qqman' package, with the advantage of including extra annotation information and interactive web-based visualizations directly from R. Once uploaded to a 'plotly' account, 'plotly' graphs (and the data behind them) can be viewed and modified in a web browser.

Maintained by Sahir Bhatnagar. Last updated 4 years ago.

0.5 match 60 stars 7.15 score 78 scripts

lvulliard

BioCircos:Interactive Circular Visualization of Genomic Data using 'htmlwidgets' and 'BioCircos.js'

Implement in 'R' interactive Circos-like visualizations of genomic data, to map information such as genetic variants, genomic fusions and aberrations to a circular genome, as proposed by the 'JavaScript' library 'BioCircos.js', based on the 'JQuery' and 'D3' technologies. The output is by default displayed in stand-alone HTML documents or in the 'RStudio' viewer pane. Moreover it can be integrated in 'R Markdown' documents and 'Shiny' applications.

Maintained by Loan Vulliard. Last updated 6 years ago.

biocircos bioinformatics circos circos-graphs htmlwidgets shiny

0.5 match 37 stars 6.98 score 58 scripts

harrison4192

presenter:Present Data with Style

Consists of custom wrapper functions using packages 'openxlsx', 'flextable', and 'officer' to create highly formatted MS office friendly output of your data frames. These viewer friendly outputs are intended to match expectations of professional looking presentations in business and consulting scenarios. The functions are opinionated in the sense that they expect the input data frame to have certain properties in order to take advantage of the automated formatting.

Maintained by Harrison Tietze. Last updated 2 years ago.

excel powerpoint

0.5 match 11 stars 6.69 score 15 scripts 4 dependents

zeehio

condformat:Conditional Formatting in Data Frames

Apply and visualize conditional formatting to data frames in R. It renders a data frame with cells formatted according to criteria defined by rules, using a tidy evaluation syntax. The table is printed either opening a web browser or within the 'RStudio' viewer if available. The conditional formatting rules allow to highlight cells matching a condition or add a gradient background to a given column. This package supports both 'HTML' and 'LaTeX' outputs in 'knitr' reports, and exporting to an 'xlsx' file.

Maintained by Sergio Oller Moreno. Last updated 1 years ago.

formatting html latex table visualisation

0.5 match 25 stars 6.53 score 91 scripts 1 dependents

stla

swipeR:Carousels using the 'JavaScript' Library 'Swiper'

Create carousels using the 'JavaScript' library 'Swiper' and the package 'htmlwidgets'. The carousels can be displayed in the 'RStudio' viewer pane, in 'Shiny' applications and in 'R markdown' documents. The package also provides a 'RStudio' addin allowing to choose image files and to display them in the viewer pane.

Maintained by Stéphane Laurent. Last updated 1 years ago.

carousel htmlwidgets shiny swiper openjdk

0.8 match 11 stars 4.14 score 25 scripts

christopherkenny

parrot:Interact with Party Parrot Gifs

What the package does (one paragraph).

Maintained by Christopher T. Kenny. Last updated 2 years ago.

1.9 match 1.70 score 7 scripts

seancarmody

ngramr:Retrieve and Plot Google n-Gram Data

Retrieve and plot word frequencies through time from the "Google Ngram Viewer" <https://books.google.com/ngrams>.

Maintained by Sean Carmody. Last updated 2 months ago.

linguistics

0.5 match 49 stars 5.79 score 42 scripts

jeffreyrstevens

flashr:Create Flashcards of Terms and Definitions

Provides functions for creating flashcard decks of terms and definitions. This package creates HTML slides using 'revealjs' that can be viewed in the 'RStudio' viewer or a web browser. Users can create flashcards from either existing built-in decks or create their own from CSV files or vectors of function names.

Maintained by Jeffrey R. Stevens. Last updated 1 years ago.

0.5 match 9 stars 5.89 score 171 scripts

cran

RJSplot:Interactive Graphs with R

Creates interactive graphs with 'R'. It joins the data analysis power of R and the visualization libraries of JavaScript in one package.

Maintained by Carlos Prieto. Last updated 3 years ago.

1.9 match 4 stars 1.60 score

filipecampelo

tkImgR:Simple Image Viewer for R Using the 'tcltk' Package

A 'Tcl/Tk' Graphical User Interface (GUI) to display images than can be zoomed and panned using the mouse and keyboard shortcuts. 'tkImgR' read and write different image formats (PPM/PGM, PNG and GIF) using the standard 'Tcl/Tk' distribution (>=8.6), but other formats (JPEG, TIFF, CR2) can be handled using the 'tkImg' package for 'Tcl/Tk'.

Maintained by Filipe Campelo. Last updated 3 years ago.

2.9 match 1.00 score 1 scripts

andrie

mailmerge:Mail Merge Using R Markdown Documents and 'gmailr'

Perform a mail merge (mass email) using the message defined in markdown, the recipients in a 'csv' file, and gmail as the mailing engine. With this package you can parse markdown documents as the body of email, and the 'yaml' header to specify the subject line of the email. Any '{}' braces in the email will be encoded with 'glue::glue()'. You can preview the email in the RStudio viewer pane, and send (draft) email using 'gmailr'.

Maintained by Andrie de Vries. Last updated 12 months ago.

mailmerge

0.5 match 43 stars 5.33 score 10 scripts

mi2datalab

tidycharts:Generate Tidy Charts Inspired by 'IBCS'

There is a wide range of R packages created for data visualization, but still, there was no simple and easily accessible way to create clean and transparent charts - up to now. The 'tidycharts' package enables the user to generate charts compliant with International Business Communication Standards ('IBCS'). It means unified bar widths, colors, chart sizes, etc. Creating homogeneous reports has never been that easy! Additionally, users can apply semantic notation to indicate different data scenarios (plan, budget, forecast). What's more, it is possible to customize the charts by creating a personal color pallet with the possibility of switching to default options after the experiments. We wanted the package to be helpful in writing reports, so we also made joining charts in a one, clear image possible. All charts are generated in SVG format and can be shown in the 'RStudio' viewer pane or exported to HTML output of 'knitr'/'markdown'.

Maintained by Bartosz Sawicki. Last updated 3 years ago.

charts clean ibcs visualization

0.5 match 5 stars 5.23 score 17 scripts

jhk0530

shinyCyJS:Create Interactive Network Visualizations in R and 'shiny'

Create Interactive Graph (Network) Visualizations. 'shinyCyJS' can be used in 'Shiny' apps or viewed from 'Rstudio' Viewer. 'shinyCyJS' includes API to build Graph model like node or edge with customized attributes for R. 'shinyCyJS' is built with 'cytoscape.js' and 'htmlwidgets' R package.

Maintained by Jinhwan Kim. Last updated 7 months ago.

cytoscape cytoscapejs shiny

0.5 match 8 stars 5.00 score 14 scripts 1 dependents

verkehrsbetriebezuerich

catmaply:Heatmap for Categorical Data using 'plotly'

Methods and plotting functions for displaying categorical data on an interactive heatmap using 'plotly'. Provides functionality for strictly categorical heatmaps, heatmaps illustrating categorized continuous data and annotated heatmaps. Also, there are various options to interact with the x-axis to prevent overlapping axis labels, e.g. via simple sliders or range sliders. Besides the viewer pane, resulting plots can be saved as a standalone HTML file, embedded in 'R Markdown' documents or in a 'Shiny' app.

Maintained by Yves Mauron. Last updated 2 months ago.

heatmaps plots

0.5 match 16 stars 4.98 score 12 scripts

lineupjs

lineupjs:'HTMLWidget' Wrapper of 'LineUp' for Visual Analysis of Multi-Attribute Rankings

'LineUp' is an interactive technique designed to create, visualize and explore rankings of items based on a set of heterogeneous attributes. This is a 'htmlwidget' wrapper around the JavaScript library 'LineUp.js'. It is designed to be used in 'R Shiny' apps and 'R Markddown' files. Due to an outdated 'webkit' version of 'RStudio' it won't work in the integrated viewer.

Maintained by Samuel Gratzl. Last updated 3 years ago.

crosstalk htmlwidget htmlwidgets lineup ranking shiny

0.5 match 55 stars 4.76 score 21 scripts

bioc

geyser:Gene Expression displaYer of SummarizedExperiment in R

Lightweight Expression displaYer (plotter / viewer) of SummarizedExperiment object in R. This package provides a quick and easy Shiny-based GUI to empower a user to use a SummarizedExperiment object to view (gene) expression grouped from the sample metadata columns (in the `colData` slot). Feature expression can either be viewed with a box plot or a heatmap.

Maintained by David McGaughey. Last updated 2 months ago.

software shinyapps gui geneexpression

0.5 match 4.65 score 18 scripts

nunzioknerr

pannotator:Visualisation and Annotation of 360 Degree Imagery

Provides a customisable R 'shiny' app for immersively visualising, mapping and annotating panospheric (360 degree) imagery. The flexible interface allows annotation of any geocoded images using up to 4 user specified dropdown menus. The app uses 'leaflet' to render maps that display the geo-locations of images and panellum <https://pannellum.org/>, a lightweight panorama viewer for the web, to render images in virtual 360 degree viewing mode. Key functions include the ability to draw on & export parts of 360 images for downstream applications. Users can also draw polygons and points on map imagery related to the panoramic images and export them for further analysis. Downstream applications include using annotations to train Artificial Intelligence/Machine Learning (AI/ML) models and geospatial modelling and analysis of camera based survey data.

Maintained by Nunzio Knerr. Last updated 4 months ago.

0.5 match 2 stars 4.70 score 8 scripts

stla

rAmCharts4:Interface to the JavaScript Library 'amCharts 4'

Creates JavaScript charts. The charts can be included in 'Shiny' apps and R markdown documents, or viewed from the R console and 'RStudio' viewer. Based on the JavaScript library 'amCharts 4' and the R packages 'htmlwidgets' and 'reactR'. Currently available types of chart are: vertical and horizontal bar chart, radial bar chart, stacked bar chart, vertical and horizontal Dumbbell chart, line chart, scatter chart, range area chart, gauge chart, boxplot chart, pie chart, and 100% stacked bar chart.

Maintained by Stéphane Laurent. Last updated 2 years ago.

amcharts htmlwidgets shiny

0.5 match 28 stars 4.61 score 29 scripts

bioc

ssviz:A small RNA-seq visualizer and analysis toolkit

Small RNA sequencing viewer

Maintained by Diana Low. Last updated 5 months ago.

immunooncology sequencing rnaseq visualization multiplecomparison genetics

0.6 match 3.60 score 2 scripts

vincentporretta

VWPre:Tools for Preprocessing Visual World Data

Gaze data from the Visual World Paradigm requires significant preprocessing prior to plotting and analyzing the data. This package provides functions for preparing visual world eye-tracking data for statistical analysis and plotting. It can prepare data for linear analyses (e.g., ANOVA, Gaussian-family LMER, Gaussian-family GAMM) as well as logistic analyses (e.g., binomial-family LMER and binomial-family GAMM). Additionally, it contains various plotting functions for creating grand average and conditional average plots. See the vignette for samples of the functionality. Currently, the functions in this package are designed for handling data collected with SR Research Eyelink eye trackers using Sample Reports created in SR Research Data Viewer. While we would like to add functionality for data collected with other systems in the future, the current package is considered to be feature-complete; further updates will mainly entail maintenance and the addition of minor functionality.

Maintained by Vincent Porretta. Last updated 4 years ago.

0.5 match 4.28 score 80 scripts 1 dependents

jianhong

colorBlindness:Safe Color Set for Color Blindness

Provide the safe color set for color blindness, the simulator of protanopia, deuteranopia. The color sets are collected from: Wong, B. (2011) <doi:10.1038/nmeth.1618>, and <http://mkweb.bcgsc.ca/biovis2012/>. The simulations of the appearance of the colors to color-deficient viewers were based on algorithms in Vienot, F., Brettel, H. and Mollon, J.D. (1999) <doi:10.1002/(SICI)1520-6378(199908)24:4%3C243::AID-COL5%3E3.0.CO;2-3>. The cvdPlot() function to generate 'ggplot' grobs of simulations were modified from <https://github.com/clauswilke/colorblindr>.

Maintained by Jianhong Ou. Last updated 4 years ago.

visualization

0.5 match 4.20 score 315 scripts

stla

findInFiles:Find Pattern in Files

Creates a HTML widget which displays the results of searching for a pattern in files in a given folder. The results can be viewed in the 'RStudio' viewer pane, included in a 'R Markdown' document or in a 'Shiny' application. Also provides a 'Shiny' application allowing to run this widget and to navigate in the files found by the search. Instead of creating a HTML widget, it is also possible to get the results of the search in a 'tibble'. The search is performed by the 'grep' command-line utility.

Maintained by Stéphane Laurent. Last updated 11 months ago.

htmlwidgets

0.5 match 12 stars 3.86 score 12 scripts

cran

msig:An R Package for Exploring Molecular Signatures Database

The Molecular Signatures Database ('MSigDB') is one of the most widely used and comprehensive databases of gene sets for performing gene set enrichment analysis <doi:10.1016/j.cels.2015.12.004>. The 'msig' package provides you with powerful, easy-to-use and flexible query functions for the 'MsigDB' database. There are 2 query modes in the 'msig' package: online query and local query. Both queries contain 2 steps: gene set name and gene. The online search is divided into 2 modes: registered search and non-registered browse. For registered search, email that you registered should be provided. Local queries can be made from local database, which can be updated by msig_update() function.

Maintained by Jing Zhang. Last updated 4 years ago.

1.9 match 1.00 score

rrprf

tablesgg:Presentation-Quality Tables, Displayed Using 'ggplot2'

Presentation-quality tables are displayed as plots on an R graphics device. Although there are other packages that format tables for display, this package is unique in combining two features: (a) It is aware of the logical structure of the table being presented, and makes use of that for automatic layout and styling of the table. This avoids the need for most manual adjustments to achieve an attractive result. (b) It displays tables using 'ggplot2' graphics. Therefore a table can be presented anywhere a graph could be, with no more effort. External software such as LaTeX or HTML or their viewers is not required. The package provides a full set of tools to control the style and appearance of tables, including titles, footnotes and reference marks, horizontal and vertical rules, and spacing of rows and columns. Methods are included to display matrices; data frames; tables created by R's ftable(), table(), and xtabs() functions; and tables created by the 'tables' and 'xtable' packages. Methods can be added to display other table-like objects. A vignette is included that illustrates usage and options available in the package.

Maintained by Richard Raubertas. Last updated 4 years ago.

0.5 match 3.70 score 5 scripts

stla

aceEditor:The 'Ace' Editor as a HTML Widget

Wraps the 'Ace' editor in a HTML widget. The 'Ace' editor has support for many languages. It can be opened in the viewer pane of 'RStudio', and this provides a second source editor.

Maintained by Stéphane Laurent. Last updated 4 years ago.

ace-editor htmlwidgets reactr rstudio

0.5 match 6 stars 3.48 score 3 scripts

stla

graph3d:A Wrapper of the JavaScript Library 'vis-graph3d'

Create interactive visualization charts to draw data in three dimensional graphs. The graphs can be included in Shiny apps and R markdown documents, or viewed from the R console and 'RStudio' Viewer. Based on the 'vis.js' Graph3d module and the 'htmlwidgets' R package.

Maintained by Stéphane Laurent. Last updated 4 years ago.

charts graphics javascript

0.5 match 4 stars 3.53 score 17 scripts

cezarykuran

oaii:'OpenAI' API R Interface

A comprehensive set of helpers that streamline data transmission and processing, making it effortless to interact with the 'OpenAI' API.

Maintained by Cezary Kuran. Last updated 1 years ago.

1.8 match 1.00 score 1 scripts

stla

cppcheckR:Check 'C' and 'C++' Files using 'Cppcheck'

Allow to run 'Cppcheck' (<https://cppcheck.sourceforge.io/>) on 'C' and 'C++' files with a 'R' command or a 'RStudio' addin. The report appears in the 'RStudio' viewer pane as a formatted 'HTML' file. It is also possible to get this report with a 'shiny' application. 'Cppcheck' can spot many error types and it can also give some recommendations on the code.

Maintained by Stéphane Laurent. Last updated 3 years ago.

cppcheck htmlwidgets rstudio-addin

0.5 match 4 stars 3.30 score 4 scripts

stla

thorn:'HTMLwidgets' Displaying Some 'WebGL' Shaders

Creates some 'WebGL' shaders. They can be used as the background of a 'Shiny' app. They also can be visualized in the 'RStudio' viewer pane or included in 'Rmd' documents, but this is pretty useless, besides contemplating them.

Maintained by Stéphane Laurent. Last updated 4 years ago.

htmlwidgets shaders webgl

0.5 match 3 stars 3.18 score 4 scripts

stla

jshintr:Lint 'JavaScript' Files

Allow to run 'jshint' on 'JavaScript' files with a 'R' command or a 'RStudio' addin. The report appears in the 'RStudio' viewer pane.

Maintained by Stéphane Laurent. Last updated 3 years ago.

0.5 match 2 stars 3.00 score

obenno

scSpotlight:A Single Cell Analysis Shiny App

A single cell analysis (viewer) app based on Seurat.

Maintained by Zhixia Xiao. Last updated 7 months ago.

seurat shiny-apps single-cell

0.6 match 2 stars 2.78 score

stla

pylintR:Lint 'Python' Files with a R Command or a 'RStudio' Addin

Allow to run 'pylint' on Python files with a R command or a 'RStudio' addin. The report appears in the RStudio viewer pane as a formatted HTML file.

Maintained by Stéphane Laurent. Last updated 3 years ago.

0.5 match 2.70 score

akkyro

PupilPre:Preprocessing Pupil Size Data

Pupillometric data collected using SR Research Eyelink eye trackers requires significant preprocessing. This package contains functions for preparing pupil dilation data for visualization and statistical analysis. Specifically, it provides a pipeline of functions which aid in data validation, the removal of blinks/artifacts, downsampling, and baselining, among others. Additionally, plotting functions for creating grand average and conditional average plots are provided. See the vignette for samples of the functionality. The package is designed for handling data collected with SR Research Eyelink eye trackers using Sample Reports created in SR Research Data Viewer.

Maintained by Aki-Juhani Kyröläinen. Last updated 5 years ago.

0.5 match 2.81 score 13 scripts

leipzig

asciiruler:Render an ASCII Ruler

An ASCII ruler is for measuring text and is especially useful for sequence analysis. Included in this package are methods to create ASCII rulers and associated GenBank sequence blocks, multi-column text displays that make it easy for viewers to locate nucleotides by position.

Maintained by Jeremy Leipzig. Last updated 3 years ago.

0.5 match 2.70 score 5 scripts