Showing 148 of total 148 results (show query)
swsoyee
r3dmol:Create Interactive 3D Visualizations of Molecular Data
Create rich and fully interactive 3D visualizations of molecular data. Visualizations can be included in Shiny apps and R markdown documents, or viewed from the R console and 'RStudio' Viewer. 'r3dmol' includes an extensive API to manipulate the visualization after creation, and supports getting data out of the visualization into R. Based on the '3dmol.js' and the 'htmlwidgets' R package.
Maintained by Wei Su. Last updated 1 years ago.
3dcomputational-biologycomputational-chemistryhacktoberfesthtmlwidgetsmolecular-graphicsmolecular-modelingproteinprotein-structurevisualization
34.7 match 90 stars 6.35 score 166 scripts 1 dependentspaulgovan
AutoDeskR:An Interface to the 'AutoDesk' 'API' Platform
An interface to the 'AutoDesk' 'API' Platform including the Authentication 'API' for obtaining authentication to the 'AutoDesk' Forge Platform, Data Management 'API' for managing data across the platform's cloud services, Design Automation 'API' for performing automated tasks on design files in the cloud, Model Derivative 'API' for translating design files into different formats, sending them to the viewer app, and extracting design data, and Viewer for rendering 2D and 3D models.
Maintained by Paul Govan. Last updated 6 months ago.
23.1 match 7 stars 6.13 score 16 scriptsdipterix
threeBrain:Your Advanced 3D Brain Visualization
A fast, interactive cross-platform, and easy to share 'WebGL'-based 3D brain viewer that visualizes 'FreeSurfer' and/or 'AFNI/SUMA' surfaces. The viewer widget can be either standalone or embedded into 'R-shiny' applications. The standalone version only require a web browser with 'WebGL2' support (for example, 'Chrome', 'Firefox', 'Safari'), and can be inserted into any websites. The 'R-shiny' support allows the 3D viewer to be dynamically generated from reactive user inputs. Please check the publication by Wang, Magnotti, Zhang, and Beauchamp (2023, <doi:10.1523/ENEURO.0328-23.2023>) for electrode localization. This viewer has been fully adopted by 'RAVE' <https://rave.wiki>, an interactive toolbox to analyze 'iEEG' data by Magnotti, Wang, and Beauchamp (2020, <doi:10.1016/j.neuroimage.2020.117341>). Please check citation("threeBrain") for details.
Maintained by Zhengjia Wang. Last updated 2 days ago.
brainecogelectroencephalographyieeglocalizationmri-brainneuroimagingtemplate-brains
9.6 match 44 stars 8.24 score 38 scripts 1 dependentsinsightsengineering
rtables:Reporting Tables
Reporting tables often have structure that goes beyond simple rectangular data. The 'rtables' package provides a framework for declaring complex multi-level tabulations and then applying them to data. This framework models both tabulation and the resulting tables as hierarchical, tree-like objects which support sibling sub-tables, arbitrary splitting or grouping of data in row and column dimensions, cells containing multiple values, and the concept of contextual summary computations. A convenient pipe-able interface is provided for declaring table layouts and the corresponding computations, and then applying them to data.
Maintained by Joe Zhu. Last updated 2 months ago.
5.0 match 232 stars 13.65 score 238 scripts 17 dependentsnanxstats
ggsci:Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'
A collection of 'ggplot2' color palettes inspired by plots in scientific journals, data visualization libraries, science fiction movies, and TV shows.
Maintained by Nan Xiao. Last updated 9 months ago.
color-palettesdata-visualizationggplot2ggscisci-fiscientific-journalsvisualization
3.5 match 680 stars 18.00 score 26k scripts 438 dependentsrstudio
rstudioapi:Safely Access the RStudio API
Access the RStudio API (if available) and provide informative error messages when it's not.
Maintained by Kevin Ushey. Last updated 4 months ago.
3.3 match 172 stars 18.81 score 3.6k scripts 2.1k dependentsthomasp85
shinyFiles:A Server-Side File System Viewer for Shiny
Provides functionality for client-side navigation of the server side file system in shiny apps. In case the app is running locally this gives the user direct access to the file system without the need to "download" files to a temporary location. Both file and folder selection as well as file saving is available.
Maintained by Thomas Lin Pedersen. Last updated 2 years ago.
4.7 match 199 stars 11.70 score 736 scripts 60 dependentsbrry
berryFunctions:Function Collection Related to Plotting and Hydrology
Draw horizontal histograms, color scattered points by 3rd dimension, enhance date- and log-axis plots, zoom in X11 graphics, trace errors and warnings, use the unit hydrograph in a linear storage cascade, convert lists to data.frames and arrays, fit multiple functions.
Maintained by Berry Boessenkool. Last updated 1 months ago.
5.3 match 13 stars 9.43 score 350 scripts 16 dependentsrstudio
shiny:Web Application Framework for R
Makes it incredibly easy to build interactive web applications with R. Automatic "reactive" binding between inputs and outputs and extensive prebuilt widgets make it possible to build beautiful, responsive, and powerful applications with minimal effort.
Maintained by Winston Chang. Last updated 13 days ago.
reactiverstudioshinyweb-appweb-development
2.3 match 5.4k stars 21.28 score 108k scripts 1.8k dependentsropensci
phonfieldwork:Linguistic Phonetic Fieldwork Tools
There are a lot of different typical tasks that have to be solved during phonetic research and experiments. This includes creating a presentation that will contain all stimuli, renaming and concatenating multiple sound files recorded during a session, automatic annotation in 'Praat' TextGrids (this is one of the sound annotation standards provided by 'Praat' software, see Boersma & Weenink 2020 <https://www.fon.hum.uva.nl/praat/>), creating an html table with annotations and spectrograms, and converting multiple formats ('Praat' TextGrid, 'ELAN', 'EXMARaLDA', 'Audacity', subtitles '.srt', and 'FLEx' flextext). All of these tasks can be solved by a mixture of different tools (any programming language has programs for automatic renaming, and Praat contains scripts for concatenating and renaming files, etc.). 'phonfieldwork' provides a functionality that will make it easier to solve those tasks independently of any additional tools. You can also compare the functionality with other packages: 'rPraat' <https://CRAN.R-project.org/package=rPraat>, 'textgRid' <https://CRAN.R-project.org/package=textgRid>.
Maintained by George Moroz. Last updated 8 months ago.
audacityeafelanexbexmaraldafieldworkflextextphoneticsphonologypraatsrt-subtitlestextgrid
7.0 match 20 stars 6.68 score 20 scriptsrobson-fernandes
bnviewer:Bayesian Networks Interactive Visualization and Explainable Artificial Intelligence
Bayesian networks provide an intuitive framework for probabilistic reasoning and its graphical nature can be interpreted quite clearly. Graph based methods of machine learning are becoming more popular because they offer a richer model of knowledge that can be understood by a human in a graphical format. The 'bnviewer' is an R Package that allows the interactive visualization of Bayesian Networks. The aim of this package is to improve the Bayesian Networks visualization over the basic and static views offered by existing packages.
Maintained by Robson Fernandes. Last updated 5 years ago.
bayesian-inferencebayesian-networkbayesian-networksprobabilistic-graphical-models
9.2 match 7 stars 4.86 score 69 scripts 1 dependentsjonclayden
RNifti:Fast R and C++ Access to NIfTI Images
Provides very fast read and write access to images stored in the NIfTI-1, NIfTI-2 and ANALYZE-7.5 formats, with seamless synchronisation of in-memory image objects between compiled C and interpreted R code. Also provides a simple image viewer, and a C/C++ API that can be used by other packages. Not to be confused with 'RNiftyReg', which performs image registration and applies spatial transformations.
Maintained by Jon Clayden. Last updated 23 days ago.
medical-imagingnifti-formatzlibcpp
4.3 match 48 stars 10.43 score 522 scripts 56 dependentsdoehm
survivoR:Data from all Seasons of Survivor (US) TV Series in Tidy Format
Datasets detailing the results, castaways, and events of each season of Survivor for the US, Australia, South Africa, New Zealand, and the UK. This includes details on the cast, voting history, immunity and reward challenges, jury votes, boot order, advantage details, and episode ratings. Use this for analysis of trends and statistics of the game.
Maintained by Daniel Oehm. Last updated 2 days ago.
6.0 match 73 stars 7.08 score 94 scriptsbioc
ShortRead:FASTQ input and manipulation
This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. The package also contains legacy support for early single-end, ungapped alignment formats.
Maintained by Bioconductor Package Maintainer. Last updated 5 months ago.
dataimportsequencingqualitycontrolbioconductor-packagecore-packagezlibcpp
3.3 match 8 stars 12.08 score 1.8k scripts 49 dependentsacorg
Racmacs:Antigenic Cartography Macros
A toolkit for making antigenic maps from immunological assay data, in order to quantify and visualize antigenic differences between different pathogen strains as described in Smith et al. (2004) <doi:10.1126/science.1097211> and used in the World Health Organization influenza vaccine strain selection process. Additional functions allow for the diagnostic evaluation of antigenic maps and an interactive viewer is provided to explore antigenic relationships amongst several strains and incorporate the visualization of associated genetic information.
Maintained by Sam Wilks. Last updated 9 months ago.
4.5 match 21 stars 8.06 score 362 scriptsinsightsengineering
teal.modules.general:General Modules for 'teal' Applications
Prebuilt 'shiny' modules containing tools for viewing data, visualizing data, understanding missing and outlier values within your data and performing simple data analysis. This extends 'teal' framework that supports reproducible research and analysis.
Maintained by Dawid Kaledkowski. Last updated 16 days ago.
general-purposemodulesnestshiny
3.7 match 12 stars 9.76 score 71 scriptsnowosad
rcartocolor:'CARTOColors' Palettes
Provides color schemes for maps and other graphics designed by 'CARTO' as described at <https://carto.com/carto-colors/>. It includes four types of palettes: aggregation, diverging, qualitative, and quantitative.
Maintained by Jakub Nowosad. Last updated 5 months ago.
color-paletteggplot2visualization
4.0 match 111 stars 8.64 score 1.4k scripts 1 dependentsaaronolsen
svgViewR:3D Animated Interactive Visualizations Using SVG and WebGL
Creates 3D animated, interactive visualizations that can be viewed in a web browser.
Maintained by Aaron M Olsen. Last updated 2 years ago.
15.1 match 2.12 score 22 scripts 2 dependentsbioc
igvR:igvR: integrative genomics viewer
Access to igv.js, the Integrative Genomics Viewer running in a web browser.
Maintained by Arkadiusz Gladki. Last updated 5 months ago.
visualizationthirdpartyclientgenomebrowsers
3.7 match 43 stars 8.31 score 118 scriptsbioc
Biobase:Biobase: Base functions for Bioconductor
Functions that are needed by many other packages or which replace R functions.
Maintained by Bioconductor Package Maintainer. Last updated 5 months ago.
infrastructurebioconductor-packagecore-package
1.8 match 9 stars 16.45 score 6.6k scripts 1.8k dependentsohdsi
ParallelLogger:Support for Parallel Computation, Logging, and Function Automation
Support for parallel computation with progress bar, and option to stop or proceed on errors. Also provides logging to console and disk, and the logging persists in the parallel threads. Additional functions support function call automation with delayed execution (e.g. for executing functions in parallel).
Maintained by Martijn Schuemie. Last updated 6 months ago.
3.1 match 12 stars 9.18 score 87 scripts 11 dependentsrstudio
r2d3:Interface to 'D3' Visualizations
Suite of tools for using 'D3', a library for producing dynamic, interactive data visualizations. Supports translating objects into 'D3' friendly data structures, rendering 'D3' scripts, publishing 'D3' visualizations, incorporating 'D3' in R Markdown, creating interactive 'D3' applications with Shiny, and distributing 'D3' based 'htmlwidgets' in R packages.
Maintained by Nick Strayer. Last updated 3 years ago.
2.2 match 519 stars 11.88 score 498 scripts 10 dependentskwb-r
kwb.utils:General Utility Functions Developed at KWB
This package contains some small helper functions that aim at improving the quality of code developed at Kompetenzzentrum Wasser gGmbH (KWB).
Maintained by Hauke Sonnenberg. Last updated 12 months ago.
3.5 match 8 stars 7.33 score 12 scripts 78 dependentsreact-r
reactR:React Helpers
Make it easy to use 'React' in R with 'htmlwidget' scaffolds, helper dependency functions, an embedded 'Babel' 'transpiler', and examples.
Maintained by Kent Russell. Last updated 6 months ago.
htmlhtmlwidgetsjavascriptreactreactjsweb
1.8 match 414 stars 14.09 score 109 scripts 175 dependentsvandomed
tab:Create Summary Tables for Statistical Reports
Contains functions for creating various types of summary tables, e.g. comparing characteristics across levels of a categorical variable and summarizing fitted generalized linear models, generalized estimating equations, and Cox proportional hazards models. Functions are available to handle data from simple random samples as well as complex surveys.
Maintained by Dane R. Van Domelen. Last updated 4 years ago.
manuscriptsreportsreproducible-researchstatisticstables
3.6 match 2 stars 6.97 score 86 scripts 9 dependentsbioc
geomeTriD:A R/Bioconductor package for interactive 3D plot of epigenetic data or single cell data
geomeTriD (Three Dimensional Geometry Package) create interactive 3D plots using the GL library with the 'three.js' visualization library (https://threejs.org) or the rgl library. In addition to creating interactive 3D plots, the application also generates simplified models in 2D. These 2D models provide a more straightforward visual representation, making it easier to analyze and interpret the data quickly. This functionality ensures that users have access to both detailed three-dimensional visualizations and more accessible two-dimensional views, catering to various analytical needs.
Maintained by Jianhong Ou. Last updated 1 months ago.
4.9 match 1 stars 5.10 score 7 scriptsfkeck
bioseq:A Toolbox for Manipulating Biological Sequences
Classes and functions to work with biological sequences (DNA, RNA and amino acid sequences). Implements S3 infrastructure to work with biological sequences as described in Keck (2020) <doi:10.1111/2041-210X.13490>. Provides a collection of functions to perform biological conversion among classes (transcription, translation) and basic operations on sequences (detection, selection and replacement based on positions or patterns). The package also provides functions to import and export sequences from and to other package formats.
Maintained by Francois Keck. Last updated 3 years ago.
3.6 match 22 stars 6.72 score 80 scripts 1 dependentsunhcr-dataviz
unhcrthemes:UNHCR 'ggplot2' Theme and Colour Palettes
A 'ggplot2' theme and color palettes following the United Nations High Commissioner for Refugees (UNHCR) Data Visualization Guidelines recommendations.
Maintained by Cédric Vidonne. Last updated 2 months ago.
ggplot2ggplot2-scalesggplot2-themes
3.8 match 27 stars 6.44 score 102 scriptsgyang274
gbp:A Bin Packing Problem Solver
Basic infrastructure and several algorithms for 1d-4d bin packing problem. This package provides a set of c-level classes and solvers for 1d-4d bin packing problem, and an r-level solver for 4d bin packing problem, which is a wrapper over the c-level 4d bin packing problem solver. The 4d bin packing problem solver aims to solve bin packing problem, a.k.a container loading problem, with an additional constraint on weight. Given a set of rectangular-shaped items, and a set of rectangular-shaped bins with weight limit, the solver looks for an orthogonal packing solution such that minimizes the number of bins and maximize volume utilization. Each rectangular-shaped item i = 1, .. , n is characterized by length l_i, depth d_i, height h_i, and weight w_i, and each rectangular-shaped bin j = 1, .. , m is specified similarly by length l_j, depth d_j, height h_j, and weight limit w_j. The item can be rotated into any orthogonal direction, and no further restrictions implied.
Maintained by Guang Yang. Last updated 6 years ago.
3d3d-bin-packing3d-bin-packing-problemcpppacking-algorithmcpp
4.6 match 34 stars 5.23 score 8 scriptsdavidgohel
ggiraph:Make 'ggplot2' Graphics Interactive
Create interactive 'ggplot2' graphics using 'htmlwidgets'.
Maintained by David Gohel. Last updated 3 months ago.
1.7 match 819 stars 14.39 score 4.1k scripts 34 dependentsbioc
igvShiny:igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)
This package is a wrapper of Integrative Genomics Viewer (IGV). It comprises an htmlwidget version of IGV. It can be used as a module in Shiny apps.
Maintained by Arkadiusz Gladki. Last updated 5 months ago.
softwareshinyappssequencingcoverage
3.2 match 37 stars 7.40 score 120 scriptsbrodieg
diffobj:Diffs for R Objects
Generate a colorized diff of two R objects for an intuitive visualization of their differences.
Maintained by Brodie Gaslam. Last updated 3 years ago.
1.8 match 232 stars 13.12 score 107 scripts 486 dependentsjuliainterop
JuliaCall:Seamless Integration Between R and 'Julia'
Provides an R interface to 'Julia', which is a high-level, high-performance dynamic programming language for numerical computing, see <https://julialang.org/> for more information. It provides a high-level interface as well as a low-level interface. Using the high level interface, you could call any 'Julia' function just like any R function with automatic type conversion. Using the low level interface, you could deal with C-level SEXP directly while enjoying the convenience of using a high-level programming language like 'Julia'.
Maintained by Changcheng Li. Last updated 3 months ago.
1.9 match 270 stars 12.33 score 380 scripts 8 dependentspcruniversum
shinyMolBio:Molecular Biology Visualization Tools for 'Shiny' Apps
Interactive visualization of 'RDML' files via 'shiny' apps. Package provides (1) PCR plate interface with ability to select individual tubes; (2) amplification/melting plots with fast hiding and highlighting individual curves; (3) 2D allelic discrimination plot.
Maintained by Konstantin A. Blagodatskikh. Last updated 4 months ago.
5.6 match 6 stars 4.10 score 14 scriptsmd-anderson-bioinformatics
NGCHM:Next Generation Clustered Heat Maps
Next-Generation Clustered Heat Maps (NG-CHMs) allow for dynamic exploration of heat map data in a web browser. 'NGCHM' allows users to create both stand-alone HTML files containing a Next-Generation Clustered Heat Map, and .ngchm files to view in the NG-CHM viewer. See Ryan MC, Stucky M, et al (2020) <doi:10.12688/f1000research.20590.2> for more details.
Maintained by Mary A Rohrdanz. Last updated 9 days ago.
4.1 match 9 stars 5.48 score 28 scriptsropensci
RefManageR:Straightforward 'BibTeX' and 'BibLaTeX' Bibliography Management
Provides tools for importing and working with bibliographic references. It greatly enhances the 'bibentry' class by providing a class 'BibEntry' which stores 'BibTeX' and 'BibLaTeX' references, supports 'UTF-8' encoding, and can be easily searched by any field, by date ranges, and by various formats for name lists (author by last names, translator by full names, etc.). Entries can be updated, combined, sorted, printed in a number of styles, and exported. 'BibTeX' and 'BibLaTeX' '.bib' files can be read into 'R' and converted to 'BibEntry' objects. Interfaces to 'NCBI Entrez', 'CrossRef', and 'Zotero' are provided for importing references and references can be created from locally stored 'PDF' files using 'Poppler'. Includes functions for citing and generating a bibliography with hyperlinks for documents prepared with 'RMarkdown' or 'RHTML'.
Maintained by Mathew W. McLean. Last updated 4 months ago.
1.8 match 115 stars 12.06 score 2.3k scripts 16 dependentswinvector
wrapr:Wrap R Tools for Debugging and Parametric Programming
Tools for writing and debugging R code. Provides: '%.>%' dot-pipe (an 'S3' configurable pipe), unpack/to (R style multiple assignment/return), 'build_frame()'/'draw_frame()' ('data.frame' example tools), 'qc()' (quoting concatenate), ':=' (named map builder), 'let()' (converts non-standard evaluation interfaces to parametric standard evaluation interfaces, inspired by 'gtools::strmacro()' and 'base::bquote()'), and more.
Maintained by John Mount. Last updated 2 years ago.
1.8 match 137 stars 11.11 score 390 scripts 12 dependentsncss-tech
soilDB:Soil Database Interface
A collection of functions for reading soil data from U.S. Department of Agriculture Natural Resources Conservation Service (USDA-NRCS) and National Cooperative Soil Survey (NCSS) databases.
Maintained by Andrew Brown. Last updated 7 days ago.
ksslnasisnrcssoilsoil-data-accesssoil-surveysoilwebsqlusda
1.8 match 87 stars 11.34 score 1.0k scripts 1 dependentsgdemin
expss:Tables, Labels and Some Useful Functions from Spreadsheets and 'SPSS' Statistics
Package computes and displays tables with support for 'SPSS'-style labels, multiple and nested banners, weights, multiple-response variables and significance testing. There are facilities for nice output of tables in 'knitr', 'Shiny', '*.xlsx' files, R and 'Jupyter' notebooks. Methods for labelled variables add value labels support to base R functions and to some functions from other packages. Additionally, the package brings popular data transformation functions from 'SPSS' Statistics and 'Excel': 'RECODE', 'COUNT', 'COUNTIF', 'VLOOKUP' and etc. These functions are very useful for data processing in marketing research surveys. Package intended to help people to move data processing from 'Excel' and 'SPSS' to R.
Maintained by Gregory Demin. Last updated 11 months ago.
excellabelslabels-supportmsexcelpivot-tablesrecodespssspss-statisticstablesvariable-labelsvlookup
1.7 match 84 stars 11.00 score 1.8k scripts 4 dependentskurthornik
NLP:Natural Language Processing Infrastructure
Basic classes and methods for Natural Language Processing.
Maintained by Kurt Hornik. Last updated 4 months ago.
2.0 match 6 stars 9.37 score 1.0k scripts 127 dependentsdslc-io
tidytuesdayR:Access the Weekly 'TidyTuesday' Project Dataset
'TidyTuesday' is a project by the 'Data Science Learning Community' in which they post a weekly dataset in a public data repository (<https://github.com/rfordatascience/tidytuesday>) for people to analyze and visualize. This package provides the tools to easily download this data and the description of the source.
Maintained by Jon Harmon. Last updated 25 days ago.
1.9 match 77 stars 9.86 score 3.0k scriptsbioc
epivizrChart:R interface to epiviz web components
This package provides an API for interactive visualization of genomic data using epiviz web components. Objects in R/BioConductor can be used to generate interactive R markdown/notebook documents or can be visualized in the R Studio's default viewer.
Maintained by Hector Corrada Bravo. Last updated 5 months ago.
3.9 match 4.68 score 12 scriptsyonicd
texPreview:Compile and Preview Snippets of 'LaTeX'
Compile snippets of 'LaTeX' directly into images from the R console to view in the 'RStudio' viewer pane, Shiny apps and 'RMarkdown' documents.
Maintained by Jonathan Sidi. Last updated 1 years ago.
2.3 match 52 stars 7.83 score 72 scriptsr-lidar
lidRviewer:3D point cloud viewer
An advanced point cloud viewer designed to fluidly display hundreds of millions of points while using minimal memory. This package is intended as a replacement for rgl in lidR when the point cloud size exceeds what rgl can handle.
Maintained by Jean-Romain Roussel. Last updated 3 months ago.
3.6 match 84 stars 4.83 score 7 scriptsemmanuelcharpentier
patchSynctex:Communication Between Editor and Viewer for Literate Programs
This utility eases the debugging of literate documents ('noweb' files) by patching the synchronization information (the '.synctex(.gz)' file) produced by 'pdflatex' with concordance information produced by 'Sweave' or 'knitr' and 'Sweave' or 'knitr' ; this allows for bilateral communication between a text editor (visualizing the 'noweb' source) and a viewer (visualizing the resultant 'PDF'), thus bypassing the intermediate 'TeX' file.
Maintained by Emmanuel Charpentier. Last updated 8 years ago.
5.3 match 1 stars 3.18 score 30 scriptssamuel-marsh
scCustomize:Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing
Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'. 'scCustomize' aims to provide 1) Customized visualizations for aid in ease of use and to create more aesthetic and functional visuals. 2) Improve speed/reproducibility of common tasks/pieces of code in scRNA-seq analysis with a single or group of functions. For citation please use: Marsh SE (2021) "Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing" <doi:10.5281/zenodo.5706430> RRID:SCR_024675.
Maintained by Samuel Marsh. Last updated 3 months ago.
customizationggplot2scrna-seqseuratsingle-cellsingle-cell-genomicssingle-cell-rna-seqvisualization
1.9 match 242 stars 8.75 score 1.1k scriptsbioc
xenLite:Simple classes and methods for managing Xenium datasets
Define a relatively light class for managing Xenium data using Bioconductor. Address use of parquet for coordinates, SpatialExperiment for assay and sample data. Address serialization and use of cloud storage.
Maintained by Vincent Carey. Last updated 5 months ago.
3.7 match 1 stars 4.48 score 4 scriptsbioc
cytoviewer:An interactive multi-channel image viewer for R
This R package supports interactive visualization of multi-channel images and segmentation masks generated by imaging mass cytometry and other highly multiplexed imaging techniques using shiny. The cytoviewer interface is divided into image-level (Composite and Channels) and cell-level visualization (Masks). It allows users to overlay individual images with segmentation masks, integrates well with SingleCellExperiment and SpatialExperiment objects for metadata visualization and supports image downloads.
Maintained by Lasse Meyer. Last updated 5 months ago.
immunooncologysoftwaresinglecellonechanneltwochannelmultichannelspatialdataimportbioconductorimagingshinyvisualization
2.9 match 7 stars 5.50 score 15 scriptsgreat-northern-diver
loon:Interactive Statistical Data Visualization
An extendable toolkit for interactive data visualization and exploration.
Maintained by R. Wayne Oldford. Last updated 2 years ago.
data-analysisdata-sciencedata-visualizationexploratory-analysisexploratory-data-analysishigh-dimensional-datainteractive-graphicsinteractive-visualizationsloonpythonstatistical-analysisstatistical-graphicsstatisticstcl-extensiontk
1.8 match 48 stars 9.00 score 93 scripts 5 dependentsopen-eo
openeo:Client Interface for 'openEO' Servers
Access data and processing functionalities of 'openEO' compliant back-ends in R.
Maintained by Florian Lahn. Last updated 2 months ago.
1.8 match 64 stars 8.65 score 128 scriptsradiant-rstats
radiant:Business Analytics using R and Shiny
A platform-independent browser-based interface for business analytics in R, based on the shiny package. The application combines the functionality of 'radiant.data', 'radiant.design', 'radiant.basics', 'radiant.model', and 'radiant.multivariate'.
Maintained by Vincent Nijs. Last updated 10 months ago.
1.9 match 460 stars 8.03 score 228 scriptsetiennebacher
altdoc:Package Documentation Websites with 'Quarto', 'Docsify', 'Docute', or 'MkDocs'
This is a simple and powerful package to create, render, preview, and deploy documentation websites for 'R' packages. It is a lightweight and flexible alternative to 'pkgdown', with support for many documentation generators, including 'Quarto', 'Docute', 'Docsify', and 'MkDocs'.
Maintained by Etienne Bacher. Last updated 2 months ago.
1.9 match 72 stars 7.88 score 3 scriptsdkaschek
dMod:Dynamic Modeling and Parameter Estimation in ODE Models
The framework provides functions to generate ODEs of reaction networks, parameter transformations, observation functions, residual functions, etc. The framework follows the paradigm that derivative information should be used for optimization whenever possible. Therefore, all major functions produce and can handle expressions for symbolic derivatives.
Maintained by Daniel Kaschek. Last updated 10 days ago.
1.8 match 20 stars 8.35 score 251 scriptsradiant-rstats
radiant.data:Data Menu for Radiant: Business Analytics using R and Shiny
The Radiant Data menu includes interfaces for loading, saving, viewing, visualizing, summarizing, transforming, and combining data. It also contains functionality to generate reproducible reports of the analyses conducted in the application.
Maintained by Vincent Nijs. Last updated 5 months ago.
1.8 match 54 stars 8.30 score 146 scripts 6 dependentsdipterix
dipsaus:A Dipping Sauce for Data Analysis and Visualizations
Works as an "add-on" to packages like 'shiny', 'future', as well as 'rlang', and provides utility functions. Just like dipping sauce adding flavors to potato chips or pita bread, 'dipsaus' for data analysis and visualizations adds handy functions and enhancements to popular packages. The goal is to provide simple solutions that are frequently asked for online, such as how to synchronize 'shiny' inputs without freezing the app, or how to get memory size on 'Linux' or 'MacOS' system. The enhancements roughly fall into these four categories: 1. 'shiny' input widgets; 2. high-performance computing using the 'future' package; 3. modify R calls and convert among numbers, strings, and other objects. 4. utility functions to get system information such like CPU chip-set, memory limit, etc.
Maintained by Zhengjia Wang. Last updated 5 days ago.
1.8 match 13 stars 7.90 score 85 scripts 3 dependentscardiomoon
ztable:Zebra-Striped Tables in LaTeX and HTML Formats
Makes zebra-striped tables (tables with alternating row colors) in LaTeX and HTML formats easily from a data.frame, matrix, lm, aov, anova, glm, coxph, nls, fitdistr, mytable and cbind.mytable objects.
Maintained by Keon-Woong Moon. Last updated 2 years ago.
1.8 match 21 stars 7.90 score 212 scripts 2 dependentscwatson
brainGraph:Graph Theory Analysis of Brain MRI Data
A set of tools for performing graph theory analysis of brain MRI data. It works with data from a Freesurfer analysis (cortical thickness, volumes, local gyrification index, surface area), diffusion tensor tractography data (e.g., from FSL) and resting-state fMRI data (e.g., from DPABI). It contains a graphical user interface for graph visualization and data exploration, along with several functions for generating useful figures.
Maintained by Christopher G. Watson. Last updated 1 years ago.
brain-connectivitybrain-imagingcomplex-networksconnectomeconnectomicsfmrigraph-theorymrinetwork-analysisneuroimagingneurosciencestatisticstractography
1.8 match 188 stars 7.86 score 107 scripts 3 dependentskanaries
GWalkR:Interactive Exploratory Data Analysis Tool
Simplify your R data analysis and data visualization workflow by turning your data frame into an interactive 'Tableau'-like interface, leveraging the 'graphic-walker' JavaScript library and the 'htmlwidgets' package.
Maintained by Yue Yu. Last updated 2 months ago.
data-visualizationggplot2tableau-alternativevisualization
1.9 match 446 stars 7.08 score 45 scriptscraddm
eegUtils:Utilities for Electroencephalographic (EEG) Analysis
Electroencephalography data processing and visualization tools. Includes import functions for 'BioSemi' (.BDF), 'Neuroscan' (.CNT), 'Brain Vision Analyzer' (.VHDR), 'EEGLAB' (.set) and 'Fieldtrip' (.mat). Many preprocessing functions such as referencing, epoching, filtering, and ICA are available. There are a variety of visualizations possible, including timecourse and topographical plotting.
Maintained by Matt Craddock. Last updated 5 months ago.
eegeeg-analysiseeg-dataeeg-signalseeg-signals-processingopenblascppopenmp
2.0 match 106 stars 6.54 score 82 scriptscoolbutuseless
emphatic:Exploratory Analysis of Tabular Data using Colour Highlighting
Tools for exploratory analysis of tabular data using colour highlighting. Highlighting is displayed in any console supporting 'ANSI' colours, and can be converted to 'HTML', 'typst', 'latex' and 'SVG'. 'quarto' and 'rmarkdown' rendering are directly supported. It is also possible to add colour to regular expression matches and highlight differences between two arbitrary R objects.
Maintained by Mike Cheng. Last updated 3 months ago.
1.7 match 141 stars 7.55 score 12 scriptsyapus
imageviewer:Simple 'htmlwidgets' Image Viewer with WebGL Brightness/Contrast
Display a 2D-matrix data as a interactive zoomable gray-scale image viewer, providing tools for manual data inspection. The viewer window shows cursor guiding lines and a corresponding data slices for both axes at the current cursor position. A tool-bar allows adjusting image display brightness/contrast through WebGL filters and performing basic high-pass/low-pass filtering.
Maintained by Iakov Pustilnik. Last updated 6 years ago.
3.6 match 6 stars 3.48 score 2 scriptstractor
tractor.base:Read, Manipulate and Visualise Magnetic Resonance Images
Functions for working with magnetic resonance images. Reading and writing of popular file formats (DICOM, Analyze, NIfTI-1, NIfTI-2, MGH); interactive and non-interactive visualisation; flexible image manipulation; metadata and sparse image handling.
Maintained by Jon Clayden. Last updated 10 days ago.
brain-imaginggraph-algorithmsparcellationtractography
1.8 match 28 stars 6.79 score 35 scripts 1 dependentsrstudio
connections:Integrates with the 'RStudio' Connections Pane and 'pins'
Enables 'DBI' compliant packages to integrate with the 'RStudio' connections pane, and the 'pins' package. It automates the display of schemata, tables, views, as well as the preview of the table's top 1000 records.
Maintained by Edgar Ruiz. Last updated 1 years ago.
connection-panedatabase-connectionpinsrstudio
1.9 match 57 stars 6.50 score 124 scripts 1 dependentschop-cgtinformatics
REDCapTidieR:Extract 'REDCap' Databases into Tidy 'Tibble's
Convert 'REDCap' exports into tidy tables for easy handling of 'REDCap' repeat instruments and event arms.
Maintained by Richard Hanna. Last updated 1 months ago.
1.5 match 35 stars 8.08 score 36 scriptscran
espadon:Easy Study of Patient DICOM Data in Oncology
Exploitation, processing and 2D-3D visualization of DICOM-RT files (structures, dosimetry, imagery) for medical physics and clinical research, in a patient-oriented perspective.
Maintained by Cathy Fontbonne. Last updated 1 months ago.
4.3 match 2.85 scoreoobianom
r2resize:In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizer or expandable container functionalities are also included. Most suitable to include in 'shiny', 'markdown' and 'quarto' documents.
Maintained by Obinna Obianom. Last updated 4 months ago.
1.9 match 15 stars 6.44 score 23 scriptsmodeloriented
modelStudio:Interactive Studio for Explanatory Model Analysis
Automate the explanatory analysis of machine learning predictive models. Generate advanced interactive model explanations in the form of a serverless HTML site with only one line of code. This tool is model-agnostic, therefore compatible with most of the black-box predictive models and frameworks. The main function computes various (instance and model-level) explanations and produces a customisable dashboard, which consists of multiple panels for plots with their short descriptions. It is possible to easily save the dashboard and share it with others. 'modelStudio' facilitates the process of Interactive Explanatory Model Analysis introduced in Baniecki et al. (2023) <doi:10.1007/s10618-023-00924-w>.
Maintained by Hubert Baniecki. Last updated 2 years ago.
aiexplainableexplainable-aiexplainable-machine-learningexplanatory-model-analysishumanimlinteractiveinteractivityinterpretabilityinterpretableinterpretable-machine-learninglearningmachinemodelmodel-visualizationvisualizationxai
1.5 match 330 stars 7.92 score 56 scriptsalun-thomas
rviewgraph:Animated Graph Layout Viewer
Provides 'Java' graphical user interfaces for viewing, manipulating and plotting graphs. Graphs may be directed or undirected.
Maintained by Alun Thomas. Last updated 2 years ago.
5.1 match 2.30 score 3 scriptsnepem-ufsc
pliman:Tools for Plant Image Analysis
Tools for both single and batch image manipulation and analysis (Olivoto, 2022 <doi:10.1111/2041-210X.13803>) and phytopathometry (Olivoto et al., 2022 <doi:10.1007/S40858-021-00487-5>). The tools can be used for the quantification of leaf area, object counting, extraction of image indexes, shape measurement, object landmark identification, and Elliptical Fourier Analysis of object outlines (Claude (2008) <doi:10.1007/978-0-387-77789-4>). The package also provides a comprehensive pipeline for generating shapefiles with complex layouts and supports high-throughput phenotyping of RGB, multispectral, and hyperspectral orthomosaics. This functionality facilitates field phenotyping using UAV- or satellite-based imagery.
Maintained by Tiago Olivoto. Last updated 2 days ago.
1.8 match 10 stars 6.68 score 476 scriptspatzaw
ReDaMoR:Relational Data Modeler
The aim of this package is to manipulate relational data models in R. It provides functions to create, modify and export data models in json format. It also allows importing models created with 'MySQL Workbench' (<https://www.mysql.com/products/workbench/>). These functions are accessible through a graphical user interface made with 'shiny'. Constraints such as types, keys, uniqueness and mandatory fields are automatically checked and corrected when editing a model. Finally, real data can be confronted to a model to check their compatibility.
Maintained by Patrice Godard. Last updated 23 days ago.
1.8 match 17 stars 6.24 score 17 scripts 1 dependentsradiant-rstats
radiant.model:Model Menu for Radiant: Business Analytics using R and Shiny
The Radiant Model menu includes interfaces for linear and logistic regression, naive Bayes, neural networks, classification and regression trees, model evaluation, collaborative filtering, decision analysis, and simulation. The application extends the functionality in 'radiant.data'.
Maintained by Vincent Nijs. Last updated 5 months ago.
1.8 match 19 stars 6.18 score 80 scripts 2 dependentsrubenarslan
rmdpartials:Partial 'rmarkdown' Documents to Prettify your Reports
Use 'rmarkdown' partials, also know as child documents in 'knitr', so you can make components for HTML, PDF, and Word documents. The package provides various helper functions to make certain functions easier. You may want to use this package, if you want to flexibly summarise objects using a combination of figures, tables, text, and HTML widgets. Unlike HTML widgets, the output is Markdown and can hence be turn into other output formats than HTML.
Maintained by Ruben Arslan. Last updated 5 years ago.
1.8 match 7 stars 5.88 score 12 scripts 6 dependentscardiomoon
interpretCI:Estimate the Confidence Interval and Interpret Step by Step
Estimate confidence intervals for mean, proportion, mean difference for unpaired and paired samples and proportion difference. Plot the confidence intervals. Generate documents explaining the statistical result step by step.
Maintained by Keon-Woong Moon. Last updated 3 years ago.
1.8 match 4 stars 6.03 score 49 scriptsneilstats
ckbplotr:Create CKB Plots
ckbplotr provides functions to help create and style plots in R. It is being developed by, and primarily for, China Kadoorie Biobank researchers.
Maintained by Neil Wright. Last updated 2 months ago.
1.8 match 10 stars 5.87 score 37 scriptsbioc
ideal:Interactive Differential Expression AnaLysis
This package provides functions for an Interactive Differential Expression AnaLysis of RNA-sequencing datasets, to extract quickly and effectively information downstream the step of differential expression. A Shiny application encapsulates the whole package. Support for reproducibility of the whole analysis is provided by means of a template report which gets automatically compiled and can be stored/shared.
Maintained by Federico Marini. Last updated 3 months ago.
immunooncologygeneexpressiondifferentialexpressionrnaseqsequencingvisualizationqualitycontrolguigenesetenrichmentreportwritingshinyappsbioconductordifferential-expressionreproducible-researchrna-seqrna-seq-analysisshinyuser-friendly
1.5 match 29 stars 6.78 score 5 scriptsmarekslenker
MorphoTools2:Multivariate Morphometric Analysis
Tools for multivariate analyses of morphological data, wrapped in one package, to make the workflow convenient and fast. Statistical and graphical tools provide a comprehensive framework for checking and manipulating input data, statistical analyses, and visualization of results. Several methods are provided for the analysis of raw data, to make the dataset ready for downstream analyses. Integrated statistical methods include hierarchical classification, principal component analysis, principal coordinates analysis, non-metric multidimensional scaling, and multiple discriminant analyses: canonical, stepwise, and classificatory (linear, quadratic, and the non-parametric k nearest neighbours). The philosophy of the package is described in Šlenker et al. 2022.
Maintained by Marek Šlenker. Last updated 6 months ago.
2.0 match 7 stars 5.02 score 9 scriptsradiant-rstats
radiant.basics:Basics Menu for Radiant: Business Analytics using R and Shiny
The Radiant Basics menu includes interfaces for probability calculation, central limit theorem simulation, comparing means and proportions, goodness-of-fit testing, cross-tabs, and correlation. The application extends the functionality in 'radiant.data'.
Maintained by Vincent Nijs. Last updated 10 months ago.
1.8 match 8 stars 5.56 score 79 scripts 3 dependentsaggregate-genius
periscope2:Enterprise Streamlined 'shiny' Application Framework Using 'bs4Dash'
A framework for building enterprise, scalable and UI-standardized 'shiny' applications. It brings enhanced features such as 'bootstrap' v4 <https://getbootstrap.com/docs/4.0/getting-started/introduction/>, additional and enhanced 'shiny' modules, customizable UI features, as well as an enhanced application file organization paradigm. This update allows developers to harness the ability to build powerful applications and enriches the 'shiny' developers' experience when building and maintaining applications.
Maintained by Mohammed Ali. Last updated 2 months ago.
1.5 match 9 stars 6.49 score 34 scriptskasperwelbers
tokenbrowser:Create Full Text Browsers from Annotated Token Lists
Create browsers for reading full texts from a token list format. Information obtained from text analyses (e.g., topic modeling, word scaling) can be used to annotate the texts.
Maintained by Kasper Welbers. Last updated 4 years ago.
1.8 match 7 stars 5.38 score 13 scripts 5 dependentsrjake
shinyobjects:Access Reactive Data Interactively
Troubleshooting reactive data in 'shiny' can be difficult. These functions will convert reactive data frames into functions and load all assigned objects into your local environment. If you create a dummy input object, as the function will suggest, you will be able to test your server and ui functions interactively.
Maintained by Jake Riley. Last updated 3 years ago.
1.8 match 22 stars 5.34 score 9 scriptsumr-amap
AMAPVox:LiDAR Data Voxelisation
Read, manipulate and write voxel spaces. Voxel spaces are read from text-based output files of the 'AMAPVox' software. 'AMAPVox' is a LiDAR point cloud voxelisation software that aims at estimating leaf area through several theoretical/numerical approaches. See more in the article Vincent et al. (2017) <doi:10.23708/1AJNMP> and the technical note Vincent et al. (2021) <doi:10.23708/1AJNMP>.
Maintained by Philippe Verley. Last updated 2 months ago.
1.5 match 15 stars 6.35 score 12 scriptsguildai
guildai:Track Machine Learning Experiments
'Guild AI' is an open-source tool for managing machine learning experiments. It's for scientists, engineers, and researchers who want to run scripts, compare results, measure progress, and automate machine learning workflows. 'Guild AI' is a light weight, external tool that runs locally. It works with any framework, doesn't require any changes to your code, or access to any web services. Users can easily record experiment metadata, track model changes, manage experiment artifacts, tune hyperparameters, and share results. 'Guild AI' combines features from 'Git', 'SQLite', and 'Make' to provide a lab notebook for machine learning.
Maintained by Tomasz Kalinowski. Last updated 2 years ago.
deep-learningkerasmachine-learning
2.0 match 19 stars 4.69 score 26 scriptsalphaprime7
normfluodbf:Cleans and Normalizes FLUOstar DBF and DAT Files from 'Liposome' Flux Assays
Cleans and Normalizes FLUOstar DBF and DAT Files obtained from liposome flux assays. Users should verify extended usage of the package on files from other assay types.
Maintained by Tingwei Adeck. Last updated 4 months ago.
1.9 match 1 stars 4.98 score 12 scriptsmelff
RKernel:Yet another R kernel for Jupyter
Provides a kernel for Jupyter.
Maintained by Martin Elff. Last updated 15 days ago.
jupyterjupyter-kerneljupyter-kernelsjupyter-notebook
2.0 match 38 stars 4.60 scoremanueleleonelli
bnRep:A Repository of Bayesian Networks from the Academic Literature
A collection of Bayesian networks (discrete, Gaussian, and conditional linear Gaussian) collated from recent academic literature. The 'bnRep_summary' object provides an overview of the Bayesian networks in the repository and the package documentation includes details about the variables in each network. A Shiny app to explore the repository can be launched with 'bnRep_app()' and is available online at <https://manueleleonelli.shinyapps.io/bnRep>. For details see <https://github.com/manueleleonelli/bnRep>.
Maintained by Manuele Leonelli. Last updated 6 months ago.
1.8 match 5 stars 5.10 score 7 scriptsshabbychef
faroutman:Shiny Fractal Viewer
a shiny page to page around in fractals.
Maintained by Steven E. Pav. Last updated 2 years ago.
5.3 match 1.70 score 2 scriptsropensci
mregions2:Access Data from Marineregions.org: Gazetteer & Data Products
Explore and retrieve marine geospatial data from the Marine Regions Gazetteer <https://marineregions.org/gazetteer.php?p=webservices> and the Marine Regions Data Products <https://marineregions.org/webservices.php>.
Maintained by Salvador Jesús Fernández Bejarano. Last updated 2 days ago.
1.5 match 9 stars 5.97 score 40 scriptsuribo
jpndistrict:Create Japanese Administration Area and Office Maps
Utilizing the data that Japanese administration area provided by the National Land Numerical Information download service (<https://nlftp.mlit.go.jp/ksj/index.html>). This package provide map data is based on the Digital Map 25000 (Map Image) published by Geospatial Information Authority of Japan (Approval No.603FY2017 information usage <https://www.gsi.go.jp>).
Maintained by Shinya Uryu. Last updated 4 years ago.
2.3 match 22 stars 3.94 score 40 scriptsskranz
shinyEvents:Shiny wrapper with event handlers instead of reactivity
Shiny is a great package. Yet, for more complex projects, with much dynamic UI, I find it hard to write clean code with its reactivity paradigm. This package wraps shiny into a more traditional programming approach: - event handlers for input changes and button clicks - explicit update functions to change outputs - no explicit server function
Maintained by Sebastian Kranz. Last updated 2 years ago.
1.8 match 36 stars 4.99 score 26 scripts 7 dependentsradiant-rstats
radiant.multivariate:Multivariate Menu for Radiant: Business Analytics using R and Shiny
The Radiant Multivariate menu includes interfaces for perceptual mapping, factor analysis, cluster analysis, and conjoint analysis. The application extends the functionality in 'radiant.data'.
Maintained by Vincent Nijs. Last updated 7 days ago.
1.8 match 5 stars 4.76 score 38 scripts 1 dependentscran
blsBandit:Data Viewer for Bureau of Labor Statistics Data
Allows users to easily visualize data from the BLS (United States of America Bureau of Labor Statistics) <https://www.bls.gov>. Currently unemployment data series U1-U6 are available. Not affiliated with the Bureau of Labor Statistics or United States Government.
Maintained by Jeremy Fitzpatrick. Last updated 2 years ago.
4.9 match 1.70 scorevlucet
rgrassdoc:Consult 'Grass GIS' Documentation in the RStudio Viewer or your Browser
A tool for easy viewing of the documentation of 'GRASS GIS' (see <https://grass.osgeo.org/>). Pages of the 'GRASS GIS' manuals found at <https://grass.osgeo.org/grass78/manuals/full_index.html> and at <https://grass.osgeo.org/grass78/manuals/addons/> can be viewed within the Viewer pane of 'RStudio', or be opened in the user's default browser.
Maintained by Valentin Lucet. Last updated 4 years ago.
documentationgrass-gisrspatial
3.4 match 6 stars 2.48 score 5 scriptsradiant-rstats
radiant.design:Design Menu for Radiant: Business Analytics using R and Shiny
The Radiant Design menu includes interfaces for design of experiments, sampling, and sample size calculation. The application extends the functionality in 'radiant.data'.
Maintained by Vincent Nijs. Last updated 10 months ago.
1.8 match 11 stars 4.57 score 19 scripts 1 dependentsbioc
ADAMgui:Activity and Diversity Analysis Module Graphical User Interface
ADAMgui is a Graphical User Interface for the ADAM package. The ADAMgui package provides 2 shiny-based applications that allows the user to study the output of the ADAM package files through different plots. It's possible, for example, to choose a specific GFAG and observe the gene expression behavior with the plots created with the GFAGtargetUi function. Features such as differential expression and foldchange can be easily seen with aid of the plots made with GFAGpathUi function.
Maintained by Jose Luiz Rybarczyk Filho. Last updated 5 months ago.
2.4 match 3.30 score 1 scriptsifellows
Deducer:A Data Analysis GUI for R
An intuitive, cross-platform graphical data analysis system. It uses menus and dialogs to guide the user efficiently through the data manipulation and analysis process, and has an excel like spreadsheet for easy data frame visualization and editing. Deducer works best when used with the Java based R GUI JGR, but the dialogs can be called from the command line. Dialogs have also been integrated into the Windows Rgui.
Maintained by Ian Fellows. Last updated 9 years ago.
2.3 match 3.44 score 91 scripts 1 dependentsdipterix
ravedash:Dashboard System for Reproducible Visualization of 'iEEG'
Dashboard system to display the analysis results produced by 'RAVE' (Magnotti J.F., Wang Z., Beauchamp M.S. (2020), Reproducible analysis and visualizations of 'iEEG' <doi:10.1016/j.neuroimage.2020.117341>). Provides infrastructure to integrate customized analysis pipelines into dashboard modules, including file structures, front-end widgets, and event handlers.
Maintained by Zhengjia Wang. Last updated 5 months ago.
1.7 match 1 stars 4.35 score 45 scriptslrberge
fplot:Automatic Distribution Graphs Using Formulas
Easy way to plot regular/weighted/conditional distributions by using formulas. The core of the package concerns distribution plots which are automatic: the many options are tailored to the data at hand to offer the nicest and most meaningful graphs possible -- with no/minimum user input. Further provide functions to plot conditional trends and box plots. See <https://lrberge.github.io/fplot/> for more information.
Maintained by Laurent Berge. Last updated 2 years ago.
1.7 match 16 stars 4.20 score 10 scriptsposit-dev
connectcreds:Manage 'OAuth' Credentials from 'Posit Connect'
A toolkit for making use of credentials mediated by 'Posit Connect'. It handles the details of communicating with the Connect API correctly, 'OAuth' token caching, and refresh behaviour.
Maintained by Aaron Jacobs. Last updated 1 months ago.
1.8 match 4 stars 4.00 score 1 scriptstalgalili
heatmaply:Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2'
Create interactive cluster 'heatmaps' that can be saved as a stand- alone HTML file, embedded in 'R Markdown' documents or in a 'Shiny' app, and available in the 'RStudio' viewer pane. Hover the mouse pointer over a cell to show details or drag a rectangle to zoom. A 'heatmap' is a popular graphical method for visualizing high-dimensional data, in which a table of numbers are encoded as a grid of colored cells. The rows and columns of the matrix are ordered to highlight patterns and are often accompanied by 'dendrograms'. 'Heatmaps' are used in many fields for visualizing observations, correlations, missing values patterns, and more. Interactive 'heatmaps' allow the inspection of specific value by hovering the mouse over a cell, as well as zooming into a region of the 'heatmap' by dragging a rectangle around the relevant area. This work is based on the 'ggplot2' and 'plotly.js' engine. It produces similar 'heatmaps' to 'heatmap.2' with the advantage of speed ('plotly.js' is able to handle larger size matrix), the ability to zoom from the 'dendrogram' panes, and the placing of factor variables in the sides of the 'heatmap'.
Maintained by Tal Galili. Last updated 8 months ago.
d3-heatmapdendextenddendrogramggplot2heatmapplotly
0.5 match 386 stars 14.21 score 2.0k scripts 45 dependentsnspyrison
cheem:Interactively Explore Local Explanations with the Radial Tour
Given a non-linear model, calculate the local explanation. We purpose view the data space, explanation space, and model residuals as ensemble graphic interactive on a shiny application. After an observation of interest is identified, the normalized variable importance of the local explanation is used as a 1D projection basis. The support of the local explanation is then explored by changing the basis with the use of the radial tour <doi:10.32614/RJ-2020-027>; <doi:10.1080/10618600.1997.10474754>.
Maintained by Nicholas Spyrison. Last updated 1 years ago.
1.5 match 2 stars 4.73 score 54 scriptsaravind-j
augmentedRCBD:Analysis of Augmented Randomised Complete Block Designs
Functions for analysis of data generated from experiments in augmented randomised complete block design according to Federer, W.T. (1961) <doi:10.2307/2527837>. Computes analysis of variance, adjusted means, descriptive statistics, genetic variability statistics etc. Further includes data visualization and report generation functions.
Maintained by J. Aravind. Last updated 5 months ago.
augmented-blockaugmented-designaugmented-rcbd
1.1 match 7 stars 5.94 score 21 scriptsinsightsengineering
teal:Exploratory Web Apps for Analyzing Clinical Trials Data
A 'shiny' based interactive exploration framework for analyzing clinical trials data. 'teal' currently provides a dynamic filtering facility and different data viewers. 'teal' 'shiny' applications are built using standard 'shiny' modules.
Maintained by Dawid Kaledkowski. Last updated 21 days ago.
clinical-trialsnestshinywebapp
0.5 match 197 stars 12.68 score 176 scripts 5 dependentsegarpor
polykde:Polyspherical Kernel Density Estimation
Kernel density estimation on the polysphere, hypersphere, and circle. Includes functions for density estimation, regression estimation, ridge estimation, bandwidth selection, kernels, samplers, and homogeneity tests. Companion package to García-Portugués and Meilán-Vila (2024) <doi:10.48550/arXiv.2411.04166> and García-Portugués and Meilán-Vila (2023) <doi:10.1007/978-3-031-32729-2_4>.
Maintained by Eduardo García-Portugués. Last updated 1 months ago.
circular-statisticsdirectional-statisticskernel-smoothingopenblascpp
2.0 match 3.00 score 5 scriptscranhaven
rock:Reproducible Open Coding Kit
The Reproducible Open Coding Kit ('ROCK', and this package, 'rock') was developed to facilitate reproducible and open coding, specifically geared towards qualitative research methods. Although it is a general-purpose toolkit, three specific applications have been implemented, specifically an interface to the 'rENA' package that implements Epistemic Network Analysis ('ENA'), means to process notes from Cognitive Interviews ('CIs'), and means to work with decentralized construct taxonomies ('DCTs'). The 'ROCK' and this 'rock' package are described in the ROCK book <https://rockbook.org> and more information, such as tutorials, is available at <https://rock.science>.
Maintained by Gjalt-Jorn Peters. Last updated 8 days ago.
1.8 match 5 stars 3.40 scoretjmahr
notestar:Notebooks Using 'Targets' and 'Bookdown'
'Targets' is an R package for dependency and build management in data analysis projects. This package provides a set of targets and project infrastructure to create 'bookdown'-based notebooks using 'targets'.
Maintained by Tristan Mahr. Last updated 2 months ago.
bookdownknitrpandocrmarkdowntargets
1.8 match 30 stars 3.18 score 7 scriptsnx10
httpgd:A 'HTTP' Server Graphics Device
A graphics device for R that is accessible via network protocols. This package was created to make it easier to embed live R graphics in integrated development environments and other applications. The included 'HTML/JavaScript' client (plot viewer) aims to provide a better overall user experience when dealing with R graphics. The device asynchronously serves graphics via 'HTTP' and 'WebSockets'.
Maintained by Florian Rupprecht. Last updated 23 hours ago.
0.5 match 428 stars 11.01 score 280 scripts 1 dependentsropensci
nasapower:NASA POWER API Client
An API client for NASA POWER global meteorology, surface solar energy and climatology data API. POWER (Prediction Of Worldwide Energy Resources) data are freely available for download with varying spatial resolutions dependent on the original data and with several temporal resolutions depending on the POWER parameter and community. This work is funded through the NASA Earth Science Directorate Applied Science Program. For more on the data themselves, the methodologies used in creating, a web- based data viewer and web access, please see <https://power.larc.nasa.gov/>.
Maintained by Adam H. Sparks. Last updated 11 days ago.
nasameteorological-dataweatherglobalweather-datameteorologynasa-poweragroclimatologyearth-sciencedata-accessclimate-dataagroclimatology-dataweather-variables
0.5 match 101 stars 9.98 score 137 scripts 3 dependentsyonicd
slickR:Create Interactive Carousels with the 'JavaScript' 'Slick' Library
Create and customize interactive carousels using the 'Slick' 'JavaScript' library and the 'htmlwidgets' package. The carousels can contain plots produced in R, images, 'iframes', videos and other 'htmlwidgets'. These carousels can be created directly from the R console, and viewed in the 'RStudio' internal viewer, in 'Shiny' apps and R Markdown documents.
Maintained by Jonathan Sidi. Last updated 1 years ago.
0.5 match 160 stars 9.37 score 199 scripts 1 dependentsshosaco
vistime:Pretty Timelines in R
A library for creating time based charts, like Gantt or timelines. Possible outputs include 'ggplot2' diagrams, 'plotly.js' graphs, 'Highcharts.js' widgets and data.frames. Results can be used in the 'RStudio' viewer pane, in 'RMarkdown' documents or in Shiny apps. In the interactive outputs created by vistime() and hc_vistime(), you can interact with the plot using mouse hover or zoom.
Maintained by Sandro Raabe. Last updated 6 months ago.
0.5 match 174 stars 9.37 score 142 scripts 1 dependentsgustavo039
Mmcsd:Modeling Complex Longitudinal Data in a Quick and Easy Way
Matching longitudinal methodology models with complex sampling design. It fits fixed and random effects models and covariance structured models so far. It also provides tools to perform statistical tests considering these specifications as described in : Pacheco, P. H. (2021). "Modeling complex longitudinal data in R: development of a statistical package." <https://repositorio.ufjf.br/jspui/bitstream/ufjf/13437/1/pedrohenriquedemesquitapacheco.pdf>.
Maintained by Pedro Pacheco. Last updated 2 years ago.
1.7 match 2.70 score 3 scriptsgadenbuie
xaringanExtra:Extras and Extensions for 'xaringan' Slides
Extras and extensions for 'xaringan' slides. Navigate your slides with tile view. Make your slides editable, live! Announce slide changes with subtle tones. Animate slide transitions with 'animate.css'. Add tabbed panels to slides with 'panelset'. Use the 'Tachyons CSS' utility toolkit for rapid slide development. Scribble on your slides. Add a copy button to your code chunks with 'clipboard'. Add a logo or top or bottom banner to every slide. Broadcast slides to stay in sync with remote viewers. Include yourself in your slides with 'webcam'. Plus a whole lot more!
Maintained by Garrick Aden-Buie. Last updated 10 months ago.
remarkjsrmarkdownslidestabsxaringanxaringan-slides
0.5 match 450 stars 8.41 score 1.9k scripts 1 dependentsconsbiol-unibern
SDMtune:Species Distribution Model Selection
User-friendly framework that enables the training and the evaluation of species distribution models (SDMs). The package implements functions for data driven variable selection and model tuning and includes numerous utilities to display the results. All the functions used to select variables or to tune model hyperparameters have an interactive real-time chart displayed in the 'RStudio' viewer pane during their execution.
Maintained by Sergio Vignali. Last updated 3 months ago.
hyperparameter-tuningspecies-distribution-modellingvariable-selectioncpp
0.5 match 25 stars 7.37 score 155 scriptsnvelden
NGLVieweR:Interactive 3D Visualization of Molecular Structures
Provides an 'htmlwidgets' <https://www.htmlwidgets.org/> interface to 'NGL.js' <http://nglviewer.org/ngl/api/>. 'NGLvieweR' can be used to visualize and interact with protein databank ('PDB') and structural files in R and Shiny applications. It includes a set of API functions to manipulate the viewer after creation in Shiny.
Maintained by Niels van der Velden. Last updated 4 months ago.
nglnglviewerpdbprotein-data-bankshinyshiny-applications
0.5 match 47 stars 7.19 score 55 scripts 1 dependentslvulliard
BioCircos:Interactive Circular Visualization of Genomic Data using 'htmlwidgets' and 'BioCircos.js'
Implement in 'R' interactive Circos-like visualizations of genomic data, to map information such as genetic variants, genomic fusions and aberrations to a circular genome, as proposed by the 'JavaScript' library 'BioCircos.js', based on the 'JQuery' and 'D3' technologies. The output is by default displayed in stand-alone HTML documents or in the 'RStudio' viewer pane. Moreover it can be integrated in 'R Markdown' documents and 'Shiny' applications.
Maintained by Loan Vulliard. Last updated 6 years ago.
biocircosbioinformaticscircoscircos-graphshtmlwidgetsshiny
0.5 match 37 stars 6.98 score 58 scriptsharrison4192
presenter:Present Data with Style
Consists of custom wrapper functions using packages 'openxlsx', 'flextable', and 'officer' to create highly formatted MS office friendly output of your data frames. These viewer friendly outputs are intended to match expectations of professional looking presentations in business and consulting scenarios. The functions are opinionated in the sense that they expect the input data frame to have certain properties in order to take advantage of the automated formatting.
Maintained by Harrison Tietze. Last updated 2 years ago.
0.5 match 11 stars 6.69 score 15 scripts 4 dependentszeehio
condformat:Conditional Formatting in Data Frames
Apply and visualize conditional formatting to data frames in R. It renders a data frame with cells formatted according to criteria defined by rules, using a tidy evaluation syntax. The table is printed either opening a web browser or within the 'RStudio' viewer if available. The conditional formatting rules allow to highlight cells matching a condition or add a gradient background to a given column. This package supports both 'HTML' and 'LaTeX' outputs in 'knitr' reports, and exporting to an 'xlsx' file.
Maintained by Sergio Oller Moreno. Last updated 1 years ago.
formattinghtmllatextablevisualisation
0.5 match 25 stars 6.53 score 91 scripts 1 dependentsstla
swipeR:Carousels using the 'JavaScript' Library 'Swiper'
Create carousels using the 'JavaScript' library 'Swiper' and the package 'htmlwidgets'. The carousels can be displayed in the 'RStudio' viewer pane, in 'Shiny' applications and in 'R markdown' documents. The package also provides a 'RStudio' addin allowing to choose image files and to display them in the viewer pane.
Maintained by Stéphane Laurent. Last updated 1 years ago.
carouselhtmlwidgetsshinyswiperopenjdk
0.8 match 11 stars 4.14 score 25 scriptschristopherkenny
parrot:Interact with Party Parrot Gifs
What the package does (one paragraph).
Maintained by Christopher T. Kenny. Last updated 2 years ago.
1.9 match 1.70 score 7 scriptsseancarmody
ngramr:Retrieve and Plot Google n-Gram Data
Retrieve and plot word frequencies through time from the "Google Ngram Viewer" <https://books.google.com/ngrams>.
Maintained by Sean Carmody. Last updated 2 months ago.
0.5 match 49 stars 5.79 score 42 scriptsjeffreyrstevens
flashr:Create Flashcards of Terms and Definitions
Provides functions for creating flashcard decks of terms and definitions. This package creates HTML slides using 'revealjs' that can be viewed in the 'RStudio' viewer or a web browser. Users can create flashcards from either existing built-in decks or create their own from CSV files or vectors of function names.
Maintained by Jeffrey R. Stevens. Last updated 1 years ago.
0.5 match 9 stars 5.89 score 171 scriptscran
RJSplot:Interactive Graphs with R
Creates interactive graphs with 'R'. It joins the data analysis power of R and the visualization libraries of JavaScript in one package.
Maintained by Carlos Prieto. Last updated 3 years ago.
1.9 match 4 stars 1.60 scorefilipecampelo
tkImgR:Simple Image Viewer for R Using the 'tcltk' Package
A 'Tcl/Tk' Graphical User Interface (GUI) to display images than can be zoomed and panned using the mouse and keyboard shortcuts. 'tkImgR' read and write different image formats (PPM/PGM, PNG and GIF) using the standard 'Tcl/Tk' distribution (>=8.6), but other formats (JPEG, TIFF, CR2) can be handled using the 'tkImg' package for 'Tcl/Tk'.
Maintained by Filipe Campelo. Last updated 3 years ago.
2.9 match 1.00 score 1 scriptsandrie
mailmerge:Mail Merge Using R Markdown Documents and 'gmailr'
Perform a mail merge (mass email) using the message defined in markdown, the recipients in a 'csv' file, and gmail as the mailing engine. With this package you can parse markdown documents as the body of email, and the 'yaml' header to specify the subject line of the email. Any '{}' braces in the email will be encoded with 'glue::glue()'. You can preview the email in the RStudio viewer pane, and send (draft) email using 'gmailr'.
Maintained by Andrie de Vries. Last updated 12 months ago.
0.5 match 43 stars 5.33 score 10 scriptsjhk0530
shinyCyJS:Create Interactive Network Visualizations in R and 'shiny'
Create Interactive Graph (Network) Visualizations. 'shinyCyJS' can be used in 'Shiny' apps or viewed from 'Rstudio' Viewer. 'shinyCyJS' includes API to build Graph model like node or edge with customized attributes for R. 'shinyCyJS' is built with 'cytoscape.js' and 'htmlwidgets' R package.
Maintained by Jinhwan Kim. Last updated 7 months ago.
0.5 match 8 stars 5.00 score 14 scripts 1 dependentsverkehrsbetriebezuerich
catmaply:Heatmap for Categorical Data using 'plotly'
Methods and plotting functions for displaying categorical data on an interactive heatmap using 'plotly'. Provides functionality for strictly categorical heatmaps, heatmaps illustrating categorized continuous data and annotated heatmaps. Also, there are various options to interact with the x-axis to prevent overlapping axis labels, e.g. via simple sliders or range sliders. Besides the viewer pane, resulting plots can be saved as a standalone HTML file, embedded in 'R Markdown' documents or in a 'Shiny' app.
Maintained by Yves Mauron. Last updated 2 months ago.
0.5 match 16 stars 4.98 score 12 scriptslineupjs
lineupjs:'HTMLWidget' Wrapper of 'LineUp' for Visual Analysis of Multi-Attribute Rankings
'LineUp' is an interactive technique designed to create, visualize and explore rankings of items based on a set of heterogeneous attributes. This is a 'htmlwidget' wrapper around the JavaScript library 'LineUp.js'. It is designed to be used in 'R Shiny' apps and 'R Markddown' files. Due to an outdated 'webkit' version of 'RStudio' it won't work in the integrated viewer.
Maintained by Samuel Gratzl. Last updated 3 years ago.
crosstalkhtmlwidgethtmlwidgetslineuprankingshiny
0.5 match 55 stars 4.76 score 21 scriptsbioc
geyser:Gene Expression displaYer of SummarizedExperiment in R
Lightweight Expression displaYer (plotter / viewer) of SummarizedExperiment object in R. This package provides a quick and easy Shiny-based GUI to empower a user to use a SummarizedExperiment object to view (gene) expression grouped from the sample metadata columns (in the `colData` slot). Feature expression can either be viewed with a box plot or a heatmap.
Maintained by David McGaughey. Last updated 2 months ago.
softwareshinyappsguigeneexpression
0.5 match 4.65 score 18 scriptsnunzioknerr
pannotator:Visualisation and Annotation of 360 Degree Imagery
Provides a customisable R 'shiny' app for immersively visualising, mapping and annotating panospheric (360 degree) imagery. The flexible interface allows annotation of any geocoded images using up to 4 user specified dropdown menus. The app uses 'leaflet' to render maps that display the geo-locations of images and panellum <https://pannellum.org/>, a lightweight panorama viewer for the web, to render images in virtual 360 degree viewing mode. Key functions include the ability to draw on & export parts of 360 images for downstream applications. Users can also draw polygons and points on map imagery related to the panoramic images and export them for further analysis. Downstream applications include using annotations to train Artificial Intelligence/Machine Learning (AI/ML) models and geospatial modelling and analysis of camera based survey data.
Maintained by Nunzio Knerr. Last updated 4 months ago.
0.5 match 2 stars 4.70 score 8 scriptsstla
rAmCharts4:Interface to the JavaScript Library 'amCharts 4'
Creates JavaScript charts. The charts can be included in 'Shiny' apps and R markdown documents, or viewed from the R console and 'RStudio' viewer. Based on the JavaScript library 'amCharts 4' and the R packages 'htmlwidgets' and 'reactR'. Currently available types of chart are: vertical and horizontal bar chart, radial bar chart, stacked bar chart, vertical and horizontal Dumbbell chart, line chart, scatter chart, range area chart, gauge chart, boxplot chart, pie chart, and 100% stacked bar chart.
Maintained by Stéphane Laurent. Last updated 2 years ago.
0.5 match 28 stars 4.61 score 29 scriptsbioc
ssviz:A small RNA-seq visualizer and analysis toolkit
Small RNA sequencing viewer
Maintained by Diana Low. Last updated 5 months ago.
immunooncologysequencingrnaseqvisualizationmultiplecomparisongenetics
0.6 match 3.60 score 2 scriptsvincentporretta
VWPre:Tools for Preprocessing Visual World Data
Gaze data from the Visual World Paradigm requires significant preprocessing prior to plotting and analyzing the data. This package provides functions for preparing visual world eye-tracking data for statistical analysis and plotting. It can prepare data for linear analyses (e.g., ANOVA, Gaussian-family LMER, Gaussian-family GAMM) as well as logistic analyses (e.g., binomial-family LMER and binomial-family GAMM). Additionally, it contains various plotting functions for creating grand average and conditional average plots. See the vignette for samples of the functionality. Currently, the functions in this package are designed for handling data collected with SR Research Eyelink eye trackers using Sample Reports created in SR Research Data Viewer. While we would like to add functionality for data collected with other systems in the future, the current package is considered to be feature-complete; further updates will mainly entail maintenance and the addition of minor functionality.
Maintained by Vincent Porretta. Last updated 4 years ago.
0.5 match 4.28 score 80 scripts 1 dependentsjianhong
colorBlindness:Safe Color Set for Color Blindness
Provide the safe color set for color blindness, the simulator of protanopia, deuteranopia. The color sets are collected from: Wong, B. (2011) <doi:10.1038/nmeth.1618>, and <http://mkweb.bcgsc.ca/biovis2012/>. The simulations of the appearance of the colors to color-deficient viewers were based on algorithms in Vienot, F., Brettel, H. and Mollon, J.D. (1999) <doi:10.1002/(SICI)1520-6378(199908)24:4%3C243::AID-COL5%3E3.0.CO;2-3>. The cvdPlot() function to generate 'ggplot' grobs of simulations were modified from <https://github.com/clauswilke/colorblindr>.
Maintained by Jianhong Ou. Last updated 4 years ago.
0.5 match 4.20 score 315 scriptsstla
findInFiles:Find Pattern in Files
Creates a HTML widget which displays the results of searching for a pattern in files in a given folder. The results can be viewed in the 'RStudio' viewer pane, included in a 'R Markdown' document or in a 'Shiny' application. Also provides a 'Shiny' application allowing to run this widget and to navigate in the files found by the search. Instead of creating a HTML widget, it is also possible to get the results of the search in a 'tibble'. The search is performed by the 'grep' command-line utility.
Maintained by Stéphane Laurent. Last updated 11 months ago.
0.5 match 12 stars 3.86 score 12 scriptsstla
aceEditor:The 'Ace' Editor as a HTML Widget
Wraps the 'Ace' editor in a HTML widget. The 'Ace' editor has support for many languages. It can be opened in the viewer pane of 'RStudio', and this provides a second source editor.
Maintained by Stéphane Laurent. Last updated 4 years ago.
ace-editorhtmlwidgetsreactrrstudio
0.5 match 6 stars 3.48 score 3 scriptsstla
graph3d:A Wrapper of the JavaScript Library 'vis-graph3d'
Create interactive visualization charts to draw data in three dimensional graphs. The graphs can be included in Shiny apps and R markdown documents, or viewed from the R console and 'RStudio' Viewer. Based on the 'vis.js' Graph3d module and the 'htmlwidgets' R package.
Maintained by Stéphane Laurent. Last updated 4 years ago.
0.5 match 4 stars 3.53 score 17 scriptscezarykuran
oaii:'OpenAI' API R Interface
A comprehensive set of helpers that streamline data transmission and processing, making it effortless to interact with the 'OpenAI' API.
Maintained by Cezary Kuran. Last updated 1 years ago.
1.8 match 1.00 score 1 scriptsstla
cppcheckR:Check 'C' and 'C++' Files using 'Cppcheck'
Allow to run 'Cppcheck' (<https://cppcheck.sourceforge.io/>) on 'C' and 'C++' files with a 'R' command or a 'RStudio' addin. The report appears in the 'RStudio' viewer pane as a formatted 'HTML' file. It is also possible to get this report with a 'shiny' application. 'Cppcheck' can spot many error types and it can also give some recommendations on the code.
Maintained by Stéphane Laurent. Last updated 3 years ago.
cppcheckhtmlwidgetsrstudio-addin
0.5 match 4 stars 3.30 score 4 scriptsstla
thorn:'HTMLwidgets' Displaying Some 'WebGL' Shaders
Creates some 'WebGL' shaders. They can be used as the background of a 'Shiny' app. They also can be visualized in the 'RStudio' viewer pane or included in 'Rmd' documents, but this is pretty useless, besides contemplating them.
Maintained by Stéphane Laurent. Last updated 4 years ago.
0.5 match 3 stars 3.18 score 4 scriptsstla
jshintr:Lint 'JavaScript' Files
Allow to run 'jshint' on 'JavaScript' files with a 'R' command or a 'RStudio' addin. The report appears in the 'RStudio' viewer pane.
Maintained by Stéphane Laurent. Last updated 3 years ago.
0.5 match 2 stars 3.00 scoreobenno
scSpotlight:A Single Cell Analysis Shiny App
A single cell analysis (viewer) app based on Seurat.
Maintained by Zhixia Xiao. Last updated 7 months ago.
0.6 match 2 stars 2.78 scorestla
pylintR:Lint 'Python' Files with a R Command or a 'RStudio' Addin
Allow to run 'pylint' on Python files with a R command or a 'RStudio' addin. The report appears in the RStudio viewer pane as a formatted HTML file.
Maintained by Stéphane Laurent. Last updated 3 years ago.
0.5 match 2.70 scoreakkyro
PupilPre:Preprocessing Pupil Size Data
Pupillometric data collected using SR Research Eyelink eye trackers requires significant preprocessing. This package contains functions for preparing pupil dilation data for visualization and statistical analysis. Specifically, it provides a pipeline of functions which aid in data validation, the removal of blinks/artifacts, downsampling, and baselining, among others. Additionally, plotting functions for creating grand average and conditional average plots are provided. See the vignette for samples of the functionality. The package is designed for handling data collected with SR Research Eyelink eye trackers using Sample Reports created in SR Research Data Viewer.
Maintained by Aki-Juhani Kyröläinen. Last updated 5 years ago.
0.5 match 2.81 score 13 scriptsleipzig
asciiruler:Render an ASCII Ruler
An ASCII ruler is for measuring text and is especially useful for sequence analysis. Included in this package are methods to create ASCII rulers and associated GenBank sequence blocks, multi-column text displays that make it easy for viewers to locate nucleotides by position.
Maintained by Jeremy Leipzig. Last updated 3 years ago.
0.5 match 2.70 score 5 scripts