R-universe search: resize

oobianom

r2resize:In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents

Automatic resizing toolbar for containers, images and tables. Various resizer or expandable container functionalities are also included. Most suitable to include in 'shiny', 'markdown' and 'quarto' documents.

Maintained by Obinna Obianom. Last updated 4 months ago.

card resize rmarkdown shiny

39.3 match 15 stars 6.44 score 23 scripts

eagerai

fastai:Interface to 'fastai'

The 'fastai' <https://docs.fast.ai/index.html> library simplifies training fast and accurate neural networks using modern best practices. It is based on research in to deep learning best practices undertaken at 'fast.ai', including 'out of the box' support for vision, text, tabular, audio, time series, and collaborative filtering models.

Maintained by Turgut Abdullayev. Last updated 11 months ago.

audio collaborative-filtering darknet darknet-image-classification fastai medical object-detection tabular text vision

15.8 match 118 stars 9.40 score 76 scripts

asgr

imager:Image Processing Library Based on 'CImg'

Fast image processing for images in up to 4 dimensions (two spatial dimensions, one time/depth dimension, one colour dimension). Provides most traditional image processing tools (filtering, morphology, transformations, etc.) as well as various functions for easily analysing image data using R. The package wraps 'CImg', <http://cimg.eu>, a simple, modern C++ library for image processing.

Maintained by Aaron Robotham. Last updated 27 days ago.

libx11 fftw3 tiff cpp openmp

7.3 match 17 stars 13.62 score 2.4k scripts 45 dependents

rstudio

keras3:R Interface to 'Keras'

Interface to 'Keras' <https://keras.io>, a high-level neural networks API. 'Keras' was developed with a focus on enabling fast experimentation, supports both convolution based networks and recurrent networks (as well as combinations of the two), and runs seamlessly on both CPU and GPU devices.

Maintained by Tomasz Kalinowski. Last updated 6 hours ago.

5.3 match 845 stars 13.60 score 264 scripts 2 dependents

nimble-dev

nimble:MCMC, Particle Filtering, and Programmable Hierarchical Modeling

A system for writing hierarchical statistical models largely compatible with 'BUGS' and 'JAGS', writing nimbleFunctions to operate models and do basic R-style math, and compiling both models and nimbleFunctions via custom-generated C++. 'NIMBLE' includes default methods for MCMC, Laplace Approximation, Monte Carlo Expectation Maximization, and some other tools. The nimbleFunction system makes it easy to do things like implement new MCMC samplers from R, customize the assignment of samplers to different parts of a model from R, and compile the new samplers automatically via C++ alongside the samplers 'NIMBLE' provides. 'NIMBLE' extends the 'BUGS'/'JAGS' language by making it extensible: New distributions and functions can be added, including as calls to external compiled code. Although most people think of MCMC as the main goal of the 'BUGS'/'JAGS' language for writing models, one can use 'NIMBLE' for writing arbitrary other kinds of model-generic algorithms as well. A full User Manual is available at <https://r-nimble.org>.

Maintained by Christopher Paciorek. Last updated 5 days ago.

bayesian-inference bayesian-methods hierarchical-models mcmc probabilistic-programming openblas cpp

5.0 match 169 stars 12.97 score 2.6k scripts 19 dependents

wch

webshot:Take Screenshots of Web Pages

Takes screenshots of web pages, including Shiny applications and R Markdown documents.

Maintained by Winston Chang. Last updated 2 years ago.

5.3 match 230 stars 12.29 score 2.3k scripts 71 dependents

t-kalinowski

keras:R Interface to 'Keras'

Interface to 'Keras' <https://keras.io>, a high-level neural networks 'API'. 'Keras' was developed with a focus on enabling fast experimentation, supports both convolution based networks and recurrent networks (as well as combinations of the two), and runs seamlessly on both 'CPU' and 'GPU' devices.

Maintained by Tomasz Kalinowski. Last updated 11 months ago.

5.6 match 10.93 score 10k scripts 55 dependents

rstudio

webshot2:Take Screenshots of Web Pages

Takes screenshots of web pages, including Shiny applications and R Markdown documents. 'webshot2' uses headless Chrome or Chromium as the browser back-end.

Maintained by Winston Chang. Last updated 1 months ago.

5.3 match 114 stars 11.20 score 928 scripts 17 dependents

bioc

GenomicRanges:Representation and manipulation of genomic intervals

The ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose containers for storing and manipulating genomic intervals and variables defined along a genome. More specialized containers for representing and manipulating short alignments against a reference genome, or a matrix-like summarization of an experiment, are defined in the GenomicAlignments and SummarizedExperiment packages, respectively. Both packages build on top of the GenomicRanges infrastructure.

Maintained by Hervé Pagès. Last updated 4 months ago.

genetics infrastructure datarepresentation sequencing annotation genomeannotation coverage bioconductor-package core-package

3.0 match 44 stars 17.75 score 13k scripts 1.3k dependents

bioc

SummarizedExperiment:A container (S4 class) for matrix-like assays

The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples.

Maintained by Hervé Pagès. Last updated 5 months ago.

genetics infrastructure sequencing annotation coverage genomeannotation bioconductor-package core-package

3.0 match 34 stars 16.85 score 8.6k scripts 1.2k dependents

tylermorganwall

rayshader:Create Maps and Visualize Data in 2D and 3D

Uses a combination of raytracing and multiple hill shading methods to produce 2D and 3D data visualizations and maps. Includes water detection and layering functions, programmable color palette generation, several built-in textures for hill shading, 2D and 3D plotting options, a built-in path tracer, 'Wavefront' OBJ file export, and the ability to save 3D visualizations to a 3D printable format.

Maintained by Tyler Morgan-Wall. Last updated 2 months ago.

cpp

4.3 match 2.1k stars 11.51 score 1.5k scripts 5 dependents

mlr-org

mlr3torch:Deep Learning with 'mlr3'

Deep Learning library that extends the mlr3 framework by building upon the 'torch' package. It allows to conveniently build, train, and evaluate deep learning models without having to worry about low level details. Custom architectures can be created using the graph language defined in 'mlr3pipelines'.

Maintained by Sebastian Fischer. Last updated 1 months ago.

data-science deep-learning machine-learning mlr3 torch

6.1 match 42 stars 7.63 score 78 scripts

bioc

IRanges:Foundation of integer range manipulation in Bioconductor

Provides efficient low-level and highly reusable S4 classes for storing, manipulating and aggregating over annotated ranges of integers. Implements an algebra of range operations, including efficient algorithms for finding overlaps and nearest neighbors. Defines efficient list-like classes for storing, transforming and aggregating large grouped data, i.e., collections of atomic vectors and DataFrames.

Maintained by Hervé Pagès. Last updated 1 months ago.

infrastructure datarepresentation bioconductor-package core-package

3.0 match 22 stars 15.09 score 2.1k scripts 1.8k dependents

bioc

EBImage:Image processing and analysis toolbox for R

EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.

Maintained by Andrzej Oleś. Last updated 5 months ago.

visualization bioinformatics image-analysis image-processing cpp

3.0 match 71 stars 12.89 score 1.5k scripts 33 dependents

pachadotdev

cpp11armadillo:An 'Armadillo' Interface

Provides function declarations and inline function definitions that facilitate communication between R and the 'Armadillo' 'C++' library for linear algebra and scientific computing. This implementation is detailed in Vargas Sepulveda and Schneider Malamud (2024) <doi:10.48550/arXiv.2408.11074>.

Maintained by Mauricio Vargas Sepulveda. Last updated 26 days ago.

armadillo cpp cpp11 hacktoberfest linear-algebra

4.0 match 9 stars 9.14 score 1 scripts 16 dependents

great-northern-diver

loon:Interactive Statistical Data Visualization

An extendable toolkit for interactive data visualization and exploration.

Maintained by R. Wayne Oldford. Last updated 2 years ago.

data-analysis data-science data-visualization exploratory-analysis exploratory-data-analysis high-dimensional-data interactive-graphics interactive-visualizations loon python statistical-analysis statistical-graphics statistics tcl-extension tk

4.0 match 48 stars 9.00 score 93 scripts 5 dependents

pachadotdev

analogsea:Interface to 'DigitalOcean'

Provides a set of functions for interacting with the 'DigitalOcean' API <https://www.digitalocean.com/>, including creating images, destroying them, rebooting, getting details on regions, and available images.

Maintained by Mauricio Vargas. Last updated 2 years ago.

cloud-computing droplet ssh

4.7 match 159 stars 7.56 score 100 scripts 1 dependents

schweflo

lpSolveAPI:R Interface to 'lp_solve' Version 5.5.2.0

The lpSolveAPI package provides an R interface to 'lp_solve', a Mixed Integer Linear Programming (MILP) solver with support for pure linear, (mixed) integer/binary, semi-continuous and special ordered sets (SOS) models.

Maintained by Florian Schwendinger. Last updated 8 months ago.

openblas

4.5 match 7.83 score 640 scripts 79 dependents

mlverse

torchvision:Models, Datasets and Transformations for Images

Provides access to datasets, models and preprocessing facilities for deep learning with images. Integrates seamlessly with the 'torch' package and it's 'API' borrows heavily from 'PyTorch' vision package.

Maintained by Daniel Falbel. Last updated 6 months ago.

3.6 match 65 stars 9.74 score 313 scripts 6 dependents

johncoene

echarts4r:Create Interactive Graphs with 'Echarts JavaScript' Version 5

Easily create interactive charts by leveraging the 'Echarts Javascript' library which includes 36 chart types, themes, 'Shiny' proxies and animations.

Maintained by David Munoz Tord. Last updated 3 days ago.

echarts hacktoberfest htmlwidget htmlwidgets visualization

3.0 match 603 stars 11.45 score 1.3k scripts 11 dependents

bgreenwell

ramify:Additional Matrix Functionality

Additional matrix functionality for R including: (1) wrappers for the base matrix function that allow matrices to be created from character strings and lists (the former is especially useful for creating block matrices), (2) better printing of large matrices via the generic "pretty" print function, and (3) a number of convenience functions for users more familiar with other scientific languages like 'Julia', 'Matlab'/'Octave', or 'Python'+'NumPy'.

Maintained by Brandon Greenwell. Last updated 8 years ago.

matrices

5.0 match 3 stars 6.32 score 154 scripts 3 dependents

bioc

ComplexHeatmap:Make Complex Heatmaps

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.

Maintained by Zuguang Gu. Last updated 5 months ago.

software visualization sequencing clustering complex-heatmaps heatmap

1.8 match 1.3k stars 16.93 score 16k scripts 151 dependents

bodkan

slendr:A Simulation Framework for Spatiotemporal Population Genetics

A framework for simulating spatially explicit genomic data which leverages real cartographic information for programmatic and visual encoding of spatiotemporal population dynamics on real geographic landscapes. Population genetic models are then automatically executed by the 'SLiM' software by Haller et al. (2019) <doi:10.1093/molbev/msy228> behind the scenes, using a custom built-in simulation 'SLiM' script. Additionally, fully abstract spatial models not tied to a specific geographic location are supported, and users can also simulate data from standard, non-spatial, random-mating models. These can be simulated either with the 'SLiM' built-in back-end script, or using an efficient coalescent population genetics simulator 'msprime' by Baumdicker et al. (2022) <doi:10.1093/genetics/iyab229> with a custom-built 'Python' script bundled with the R package. Simulated genomic data is saved in a tree-sequence format and can be loaded, manipulated, and summarised using tree-sequence functionality via an R interface to the 'Python' module 'tskit' by Kelleher et al. (2019) <doi:10.1038/s41588-019-0483-y>. Complete model configuration, simulation and analysis pipelines can be therefore constructed without a need to leave the R environment, eliminating friction between disparate tools for population genetic simulations and data analysis.

Maintained by Martin Petr. Last updated 13 days ago.

popgen population-genetics simulations spatial-statistics

3.0 match 56 stars 9.15 score 88 scripts

truecluster

ff:Memory-Efficient Storage of Large Data on Disk and Fast Access Functions

The ff package provides data structures that are stored on disk but behave (almost) as if they were in RAM by transparently mapping only a section (pagesize) in main memory - the effective virtual memory consumption per ff object. ff supports R's standard atomic data types 'double', 'logical', 'raw' and 'integer' and non-standard atomic types boolean (1 bit), quad (2 bit unsigned), nibble (4 bit unsigned), byte (1 byte signed with NAs), ubyte (1 byte unsigned), short (2 byte signed with NAs), ushort (2 byte unsigned), single (4 byte float with NAs). For example 'quad' allows efficient storage of genomic data as an 'A','T','G','C' factor. The unsigned types support 'circular' arithmetic. There is also support for close-to-atomic types 'factor', 'ordered', 'POSIXct', 'Date' and custom close-to-atomic types. ff not only has native C-support for vectors, matrices and arrays with flexible dimorder (major column-order, major row-order and generalizations for arrays). There is also a ffdf class not unlike data.frames and import/export filters for csv files. ff objects store raw data in binary flat files in native encoding, and complement this with metadata stored in R as physical and virtual attributes. ff objects have well-defined hybrid copying semantics, which gives rise to certain performance improvements through virtualization. ff objects can be stored and reopened across R sessions. ff files can be shared by multiple ff R objects (using different data en/de-coding schemes) in the same process or from multiple R processes to exploit parallelism. A wide choice of finalizer options allows to work with 'permanent' files as well as creating/removing 'temporary' ff files completely transparent to the user. On certain OS/Filesystem combinations, creating the ff files works without notable delay thanks to using sparse file allocation. Several access optimization techniques such as Hybrid Index Preprocessing and Virtualization are implemented to achieve good performance even with large datasets, for example virtual matrix transpose without touching a single byte on disk. Further, to reduce disk I/O, 'logicals' and non-standard data types get stored native and compact on binary flat files i.e. logicals take up exactly 2 bits to represent TRUE, FALSE and NA. Beyond basic access functions, the ff package also provides compatibility functions that facilitate writing code for ff and ram objects and support for batch processing on ff objects (e.g. as.ram, as.ff, ffapply). ff interfaces closely with functionality from package 'bit': chunked looping, fast bit operations and coercions between different objects that can store subscript information ('bit', 'bitwhich', ff 'boolean', ri range index, hi hybrid index). This allows to work interactively with selections of large datasets and quickly modify selection criteria. Further high-performance enhancements can be made available upon request.

Maintained by Jens Oehlschlägel. Last updated 2 months ago.

cpp

2.3 match 27 stars 12.01 score 764 scripts 71 dependents

ramnathv

htmlwidgets:HTML Widgets for R

A framework for creating HTML widgets that render in various contexts including the R console, 'R Markdown' documents, and 'Shiny' web applications.

Maintained by Carson Sievert. Last updated 1 years ago.

1.3 match 791 stars 19.05 score 7.4k scripts 3.1k dependents

trevorld

bittermelon:Bitmap Tools

Provides functions for creating, modifying, and displaying bitmaps including printing them in the terminal. There is a special emphasis on monochrome bitmap fonts and their glyphs as well as colored pixel art/sprites. Provides native read/write support for the 'hex' and 'yaff' bitmap font formats and if 'monobit' <https://github.com/robhagemans/monobit> is installed can also read/write several additional bitmap font formats.

Maintained by Trevor L. Davis. Last updated 2 months ago.

3.8 match 7 stars 6.32 score 2 dependents

yang-tang

shinyjqui:'jQuery UI' Interactions and Effects for Shiny

An extension to shiny that brings interactions and animation effects from 'jQuery UI' library.

Maintained by Yang Tang. Last updated 1 years ago.

jquery-ui shiny

2.0 match 276 stars 10.72 score 464 scripts 16 dependents

john-d-fox

Rcmdr:R Commander

A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.

Maintained by John Fox. Last updated 5 months ago.

2.3 match 4 stars 9.49 score 636 scripts 38 dependents

tylermorganwall

rayimage:Image Processing for Simulated Cameras

Uses convolution-based techniques to generate simulated camera bokeh, depth of field, and other camera effects, using an image and an optional depth map. Accepts both filename inputs and in-memory array representations of images and matrices. Includes functions to perform 2D convolutions, reorient and resize images/matrices, add image and text overlays, generate camera vignette effects, and add titles to images.

Maintained by Tyler Morgan-Wall. Last updated 1 months ago.

cpp

2.8 match 52 stars 7.67 score 22 scripts 12 dependents

filipecampelo

tkRplotR:Display Resizable Plots

Display a plot in a Tk canvas.

Maintained by Filipe Campelo. Last updated 4 years ago.

9.1 match 2.18 score 6 scripts 5 dependents

r-forge

latticeExtra:Extra Graphical Utilities Based on Lattice

Building on the infrastructure provided by the lattice package, this package provides several new high-level functions and methods, as well as additional utilities such as panel and axis annotation functions.

Maintained by Deepayan Sarkar. Last updated 3 years ago.

1.8 match 10.18 score 2.6k scripts 233 dependents

mlampros

OpenImageR:An Image Processing Toolkit

Incorporates functions for image preprocessing, filtering and image recognition. The package takes advantage of 'RcppArmadillo' to speed up computationally intensive functions. The histogram of oriented gradients descriptor is a modification of the 'findHOGFeatures' function of the 'SimpleCV' computer vision platform, the average_hash(), dhash() and phash() functions are based on the 'ImageHash' python library. The Gabor Feature Extraction functions are based on 'Matlab' code of the paper, "CloudID: Trustworthy cloud-based and cross-enterprise biometric identification" by M. Haghighat, S. Zonouz, M. Abdel-Mottaleb, Expert Systems with Applications, vol. 42, no. 21, pp. 7905-7916, 2015, <doi:10.1016/j.eswa.2015.06.025>. The 'SLIC' and 'SLICO' superpixel algorithms were explained in detail in (i) "SLIC Superpixels Compared to State-of-the-art Superpixel Methods", Radhakrishna Achanta, Appu Shaji, Kevin Smith, Aurelien Lucchi, Pascal Fua, and Sabine Suesstrunk, IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 34, num. 11, p. 2274-2282, May 2012, <doi:10.1109/TPAMI.2012.120> and (ii) "SLIC Superpixels", Radhakrishna Achanta, Appu Shaji, Kevin Smith, Aurelien Lucchi, Pascal Fua, and Sabine Suesstrunk, EPFL Technical Report no. 149300, June 2010.

Maintained by Lampros Mouselimis. Last updated 2 years ago.

filtering gabor-feature-extraction gabor-filters hog-features image image-hashing processing rcpparmadillo recognition slic slico superpixels openblas cpp openmp

1.7 match 60 stars 9.86 score 358 scripts 8 dependents

bioc

GenomicTuples:Representation and Manipulation of Genomic Tuples

GenomicTuples defines general purpose containers for storing genomic tuples. It aims to provide functionality for tuples of genomic co-ordinates that are analogous to those available for genomic ranges in the GenomicRanges Bioconductor package.

Maintained by Peter Hickey. Last updated 4 months ago.

infrastructure datarepresentation sequencing cpp

3.0 match 4 stars 5.48 score 7 scripts

cdueben

cppcontainers:'C++' Standard Template Library Containers

Use 'C++' Standard Template Library containers interactively in R. Includes sets, unordered sets, multisets, unordered multisets, maps, unordered maps, multimaps, unordered multimaps, stacks, queues, priority queues, vectors, deques, forward lists, and lists.

Maintained by Christian Düben. Last updated 2 months ago.

cpp

3.0 match 4.70 score 1 scripts

bioc

limmaGUI:GUI for limma Package With Two Color Microarrays

A Graphical User Interface for differential expression analysis of two-color microarray data using the limma package.

Maintained by Gordon Smyth. Last updated 5 months ago.

gui geneexpression differentialexpression dataimport bayesian regression timecourse microarray mrnamicroarray twochannel batcheffect multiplecomparison normalization preprocessing qualitycontrol

3.0 match 4.60 score 1 scripts

bioc

affylmGUI:GUI for limma Package with Affymetrix Microarrays

A Graphical User Interface (GUI) for analysis of Affymetrix microarray gene expression data using the affy and limma packages.

Maintained by Gordon Smyth. Last updated 5 months ago.

gui geneexpression transcription differentialexpression dataimport bayesian regression timecourse microarray mrnamicroarray onechannel proprietaryplatforms batcheffect multiplecomparison normalization preprocessing qualitycontrol

3.0 match 4.60 score 3 scripts

willgearty

deeptime:Plotting Tools for Anyone Working in Deep Time

Extends the functionality of other plotting packages (notably 'ggplot2') to help facilitate the plotting of data over long time intervals, including, but not limited to, geological, evolutionary, and ecological data. The primary goal of 'deeptime' is to enable users to add highly customizable timescales to their visualizations. Other functions are also included to assist with other areas of deep time visualization.

Maintained by William Gearty. Last updated 3 months ago.

geology ggplot2 paleontology visualization

1.2 match 92 stars 10.61 score 207 scripts 3 dependents

thebioengineer

camcorder:Record Your Plot History

Record and generate a 'gif' of your 'R' sessions plots. When creating a visualization, there is inevitably iteration and refinement that occurs. Automatically save the plots made to a specified directory, previewing them as they would be saved. Then combine all plots generated into a 'gif' to show the plot refinement over time.

Maintained by Ellis Hughes. Last updated 1 years ago.

1.3 match 208 stars 9.21 score 980 scripts

privefl

rmio:Provides 'mio' C++11 Header Files

Provides header files of 'mio', a cross-platform C++11 header-only library for memory mapped file IO <https://github.com/mandreyel/mio>.

Maintained by Florian Privé. Last updated 3 years ago.

2.0 match 5 stars 5.55 score 3 scripts 20 dependents

hadley

ggvis:Interactive Grammar of Graphics

An implementation of an interactive grammar of graphics, taking the best parts of 'ggplot2', combining them with the reactive framework of 'shiny' and drawing web graphics using 'vega'.

Maintained by Hadley Wickham. Last updated 1 years ago.

1.5 match 1 stars 7.02 score 2.3k scripts 11 dependents

coolbutuseless

tickle:Easily Build Tcl/Tk UIs

Wrap tcltk to make GUI creation easier.

Maintained by mikefc. Last updated 3 years ago.

1.8 match 125 stars 5.88 score 11 scripts

mrcieu

gwasglue2:GWAS summary data sources connected to analytical tools

Description: Many tools exist that use GWAS summary data for colocalisation, fine mapping, Mendelian randomization, visualisation, etc. This package is a conduit that connects R packages that can retrieve GWAS summary data to various tools for analysing those data.

Maintained by Rita Rasteiro. Last updated 1 years ago.

1.8 match 21 stars 5.69 score 11 scripts 2 dependents

ecodynizw

imageseg:Deep Learning Models for Image Segmentation

A general-purpose workflow for image segmentation using TensorFlow models based on the U-Net architecture by Ronneberger et al. (2015) <arXiv:1505.04597> and the U-Net++ architecture by Zhou et al. (2018) <arXiv:1807.10165>. We provide pre-trained models for assessing canopy density and understory vegetation density from vegetation photos. In addition, the package provides a workflow for easily creating model input and model architectures for general-purpose image segmentation based on grayscale or color images, both for binary and multi-class image segmentation.

Maintained by Juergen Niedballa. Last updated 1 years ago.

image-segmentation keras tensorflow

2.0 match 18 stars 4.95 score 9 scripts

dillonhammill

DataEditR:An Interactive Editor for Viewing, Entering, Filtering & Editing Data

An interactive editor built on 'rhandsontable' to allow the interactive viewing, entering, filtering and editing of data in R <https://dillonhammill.github.io/DataEditR/>.

Maintained by Dillon Hammill. Last updated 2 years ago.

1.3 match 385 stars 7.79 score 106 scripts 1 dependents

cran

shiny.blueprint:Palantir's 'Blueprint' for 'Shiny' Apps

Easily use 'Blueprint', the popular 'React' library from Palantir, in your 'Shiny' app. 'Blueprint' provides a rich set of UI components for creating visually appealing applications and is optimized for building complex, data-dense web interfaces. This package provides most components from the underlying library, as well as special wrappers for some components to make it easy to use them in 'R' without writing 'JavaScript' code.

Maintained by Jakub Sobolewski. Last updated 10 months ago.

2.3 match 3.70 score

rvlenth

unrepx:Analysis and Graphics for Unreplicated Experiments

Provides half-normal plots, reference plots, and Pareto plots of effects from an unreplicated experiment, along with various pseudo-standard-error measures, simulated reference distributions, and other tools. Many of these methods are described in Daniel C. (1959) <doi:10.1080/00401706.1959.10489866> and/or Lenth R.V. (1989) <doi:10.1080/00401706.1989.10488595>, but some new approaches are added and integrated in one package.

Maintained by Russell Lenth. Last updated 9 months ago.

2.0 match 1 stars 4.04 score 22 scripts

g6t

cloudfs:Streamlined Interface to Interact with Cloud Storage Platforms

A unified interface for simplifying cloud storage interactions, including uploading, downloading, reading, and writing files, with functions for both 'Google Drive' (<https://www.google.com/drive/>) and 'Amazon S3' (<https://aws.amazon.com/s3/>).

Maintained by Iaroslav Domin. Last updated 10 months ago.

1.8 match 2 stars 4.30 score 3 scripts

enricoschumann

PMwR:Portfolio Management with R

Tools for the practical management of financial portfolios: backtesting investment and trading strategies, computing profit/loss and returns, analysing trades, handling lists of transactions, reporting, and more. The package provides a small set of reliable, efficient and convenient tools for processing and analysing trade/portfolio data. The manual provides all the details; it is available from <https://enricoschumann.net/R/packages/PMwR/manual/PMwR.html>. Examples and descriptions of new features are provided at <https://enricoschumann.net/notes/PMwR/>.

Maintained by Enrico Schumann. Last updated 2 days ago.

1.8 match 4.35 score 30 scripts

teunbrand

ggh4x:Hacks for 'ggplot2'

A 'ggplot2' extension that does a variety of little helpful things. The package extends 'ggplot2' facets through customisation, by setting individual scales per panel, resizing panels and providing nested facets. Also allows multiple colour and fill scales per plot. Also hosts a smaller collection of stats, geoms and axis guides.

Maintained by Teun van den Brand. Last updated 3 months ago.

ggplot-extension ggplot2

0.5 match 616 stars 13.98 score 4.4k scripts 20 dependents

bioc

factR:Functional Annotation of Custom Transcriptomes

factR contain tools to process and interact with custom-assembled transcriptomes (GTF). At its core, factR constructs CDS information on custom transcripts and subsequently predicts its functional output. In addition, factR has tools capable of plotting transcripts, correcting chromosome and gene information and shortlisting new transcripts.

Maintained by Fursham Hamid. Last updated 5 months ago.

alternativesplicing functionalprediction geneprediction custom-transcriptomes functional-annotation gtf rna-seq-analysis

1.8 match 1 stars 4.00 score 5 scripts

skranz

shinyEventsUI:Some shiny widgets that only work with shinyEvents

Some shiny widgets that only work with shinyEvents

Maintained by Sebastian Kranz. Last updated 4 years ago.

3.7 match 1 stars 1.70 score

cran

mand:Multivariate Analysis for Neuroimaging Data

Several functions can be used to analyze neuroimaging data using multivariate methods based on the 'msma' package. The functions used in the book entitled "Multivariate Analysis for Neuroimaging Data" (2021, ISBN-13: 978-0367255329) are contained.

Maintained by Atsushi Kawaguchi. Last updated 2 years ago.

2.0 match 2.85 score 10 scripts

jmablog

tinieR:Shrink Image Filesizes with TinyPNG.com API

Shrink image filesizes with the TinyPNG API <https://tinypng.com>. From the TinyPNG website: "TinyPNG uses smart lossy compression techniques to reduce the file size of your files. By selectively decreasing the number of colors in the image, fewer bytes are required to store the data. The effect is nearly invisible but it makes a very large difference in file size!" TinieR works with .png and .jpg/.jpeg files, and can return the new image filepath to enable embedding in other image workflows/functions.

Maintained by James Adams. Last updated 3 years ago.

1.3 match 11 stars 4.22 score 4 scripts

iame-researchcenter

PFIM:Population Fisher Information Matrix

Evaluate or optimize designs for nonlinear mixed effects models using the Fisher Information matrix. Methods used in the package refer to Mentré F, Mallet A, Baccar D (1997) <doi:10.1093/biomet/84.2.429>, Retout S, Comets E, Samson A, Mentré F (2007) <doi:10.1002/sim.2910>, Bazzoli C, Retout S, Mentré F (2009) <doi:10.1002/sim.3573>, Le Nagard H, Chao L, Tenaillon O (2011) <doi:10.1186/1471-2148-11-326>, Combes FP, Retout S, Frey N, Mentré F (2013) <doi:10.1007/s11095-013-1079-3> and Seurat J, Tang Y, Mentré F, Nguyen TT (2021) <doi:10.1016/j.cmpb.2021.106126>.

Maintained by Romain Leroux. Last updated 5 months ago.

1.8 match 2.78 score 9 scripts

djnavarro

arttools:Tools For Generative Art Workflows

A personal-use package for managing generative art workflows.

Maintained by Danielle Navarro. Last updated 2 years ago.

1.8 match 6 stars 2.48 score 7 scripts

gianlucafilippa

phenopix:Process Digital Images of a Vegetation Cover

A collection of functions to process digital images, depict greenness index trajectories and extract relevant phenological stages.

Maintained by Gianluca Filippa. Last updated 1 months ago.

1.8 match 5 stars 2.52 score 66 scripts

ropensci

MODIStsp:Find, Download and Process MODIS Land Products Data

Allows automating the creation of time series of rasters derived from MODIS satellite land products data. It performs several typical preprocessing steps such as download, mosaicking, reprojecting and resizing data acquired on a specified time period. All processing parameters can be set using a user-friendly GUI. Users can select which layers of the original MODIS HDF files they want to process, which additional quality indicators should be extracted from aggregated MODIS quality assurance layers and, in the case of surface reflectance products, which spectral indexes should be computed from the original reflectance bands. For each output layer, outputs are saved as single-band raster files corresponding to each available acquisition date. Virtual files allowing access to the entire time series as a single file are also created. Command-line execution exploiting a previously saved processing options file is also possible, allowing users to automatically update time series related to a MODIS product whenever a new image is available. For additional documentation refer to the following article: Busetto and Ranghetti (2016) <doi:10.1016/j.cageo.2016.08.020>.

Maintained by Luigi Ranghetti. Last updated 8 months ago.

gdal modis modis-data modis-land-products peer-reviewed preprocessing remote-sensing satellite-imagery time-series

0.5 match 156 stars 8.04 score 86 scripts 1 dependents

wilarhen

ecochange:Integrating Ecosystem Remote Sensing Products to Derive EBV Indicators

Essential Biodiversity Variables (EBV) are state variables with dimensions on time, space, and biological organization that document biodiversity change. Freely available ecosystem remote sensing products (ERSP) are downloaded and integrated with data for national or regional domains to derive indicators for EBV in the class ecosystem structure (Pereira et al., 2013) <doi:10.1126/science.1229931>, including horizontal ecosystem extents, fragmentation, and information-theory indices. To process ERSP, users must provide a polygon or geographic administrative data map. Downloadable ERSP include Global Surface Water (Peckel et al., 2016) <doi:10.1038/nature20584>, Forest Change (Hansen et al., 2013) <doi:10.1126/science.1244693>, and Continuous Tree Cover data (Sexton et al., 2013) <doi:10.1080/17538947.2013.786146>.

Maintained by Wilson Lara Henao. Last updated 9 months ago.

1.2 match 2 stars 2.30 score 5 scripts

davidzarruk

IGCities:Simulate Impact of Different Urban Policies Through a General Equilibrium Model

Develops a General Equilibrium (GE) Model, which estimates key variables such as wages, the number of residents and workers, the prices of the floor space, and its distribution between commercial and residential use, as in Ahlfeldt et al., (2015) <https://onlinelibrary.wiley.com/doi/abs/10.3982/ECTA10876>. By doing so, the model allows understanding the economic influence of different urban policies.

Maintained by David Zarruk. Last updated 2 years ago.

1.6 match 1 stars 1.70 score

cran

IGC.CSM:Simulate Impact of Different Urban Policies Through a General Equilibrium Model

Develops a General Equilibrium (GE) Model, which estimates key variables such as wages, the number of residents and workers, the prices of the floor space, and its distribution between commercial and residential use, as in Ahlfeldt et al., (2015) <doi:10.3982/ECTA10876>. By doing so, the model allows understanding the economic influence of different urban policies.

Maintained by Roman Zarate. Last updated 6 months ago.

1.6 match 1.70 score

dipterix

shidashi:A Shiny Dashboard Template System

A template system based on 'AdminLTE3' (<https://adminlte.io/themes/v3/>) theme. Comes with default theme that can be easily customized. Developers can upload modified templates on 'Github', and users can easily download templates with 'RStudio' project wizard. The key features of the default template include light and dark theme switcher, resizing graphs, synchronizing inputs across sessions, new notification system, fancy progress bars, and card-like flip panels with back sides, as well as various of 'HTML' tool widgets.

Maintained by Zhengjia Wang. Last updated 1 years ago.

0.5 match 10 stars 4.72 score 35 scripts 1 dependents

rmheiberger

RcmdrPlugin.HH:Rcmdr Support for the HH Package

Rcmdr menu support for many of the functions in the HH package. The focus is on menu items for functions we use in our introductory courses.

Maintained by Richard M. Heiberger. Last updated 1 years ago.

1.7 match 1.42 score 5 scripts

petergandenberger

gridstackeR:Wrapper for 'gridstack.js'

An easy way to create responsive layouts with just a few lines of code. You can create boxes that are draggable and resizable and load predefined Layouts. The package serves as a wrapper to allow for easy integration of the 'gridstack.js' functionalities <https://github.com/gridstack/gridstack.js>.

Maintained by Peter Gandenberger. Last updated 2 years ago.

0.5 match 19 stars 4.38 score 25 scripts

r-tmap

tmap.cartogram:Extension to 'tmap' for Creating Cartograms

Provides new layer functions to 'tmap' for creating various types of cartograms. A cartogram is a type of thematic map in which geographic areas are resized or distorted based on a quantitative variable, such as population. The goal is to make the area sizes proportional to the selected variable while preserving geographic positions as much as possible.

Maintained by Martijn Tennekes. Last updated 21 days ago.

0.5 match 1 stars 4.30 score 1 scripts

stla

monaco:The 'Monaco' Editor as a HTML Widget

A HTML widget rendering the 'Monaco' editor. The 'Monaco' editor is the code editor which powers 'VS Code'. It is particularly well developed for 'JavaScript'. In addition to the built-in features of the 'Monaco' editor, the widget allows to prettify multiple languages, to view the 'HTML' rendering of 'Markdown' code, and to view and resize 'SVG' images.

Maintained by Stéphane Laurent. Last updated 3 years ago.

htmlwidgets monaco-editor rstudio

0.5 match 12 stars 3.89 score 13 scripts

cran

plothelper:New Plots Based on 'ggplot2' and Functions to Create Regular Shapes

An extension to 'ggplot2' and 'magick'. It contains three groups of functions: Functions in the first group draw 'ggplot2' - based plots: geom_shading_bar() draws barplot with shading colors in each bar. geom_rect_cm(), geom_circle_cm() and geom_ellipse_cm() draw rectangles, circles and ellipses with centimeter as their unit. Thus their sizes do not change when the coordinate system or the aspect ratio changes. annotation_transparent_text() draws labels with transparent texts. annotation_shading_polygon() draws irregular polygons with shading colors. Functions in the second group generate coordinates for regular shapes and make linear transformations. Functions in the third group are 'magick' - based functions facilitating image processing.

Maintained by Jiang Wu. Last updated 5 years ago.

1.8 match 1.00 score