Showing 38 of total 38 results (show query)
rstudio
pins:Pin, Discover, and Share Resources
Publish data sets, models, and other R objects, making it easy to share them across projects and with your colleagues. You can pin objects to a variety of "boards", including local folders (to share on a networked drive or with 'DropBox'), 'Posit Connect', 'AWS S3', and more.
Maintained by Julia Silge. Last updated 1 months ago.
azuregcloudrpinsrsconnects3storage
90.0 match 321 stars 14.17 score 1.9k scripts 17 dependents
monty-se
PINstimation:Estimation of the Probability of Informed Trading
A comprehensive bundle of utilities for the estimation of probability of informed trading models: original PIN in Easley and O'Hara (1992) and Easley et al. (1996); Multilayer PIN (MPIN) in Ersan (2016); Adjusted PIN (AdjPIN) in Duarte and Young (2009); and volume-synchronized PIN (VPIN) in Easley et al. (2011, 2012). Implementations of various estimation methods suggested in the literature are included. Additional compelling features comprise posterior probabilities, an implementation of an expectation-maximization (EM) algorithm, and PIN decomposition into layers, and into bad/good components. Versatile data simulation tools, and trade classification algorithms are among the supplementary utilities. The package provides fast, compact, and precise utilities to tackle the sophisticated, error-prone, and time-consuming estimation procedure of informed trading, and this solely using the raw trade-level data.
Maintained by Montasser Ghachem. Last updated 5 months ago.
clustering-analysisexpectation-maximisation-algorithmhierarchical-clusteringinformation-asymmetrymarket-microstructuremaximum-likelihood-estimationmixture-distributionspoisson-distribution
29.0 match 36 stars 6.48 score 14 scripts
ropengov
sweidnumbr:Handling of Swedish Identity Numbers
Structural handling of identity numbers used in the Swedish administration such as personal identity numbers ('personnummer') and organizational identity numbers ('organisationsnummer').
Maintained by Mans Magnusson. Last updated 1 years ago.
21.6 match 8 stars 5.38 score
egeulgen
pathfindR:Enrichment Analysis Utilizing Active Subnetworks
Enrichment analysis enables researchers to uncover mechanisms underlying a phenotype. However, conventional methods for enrichment analysis do not take into account protein-protein interaction information, resulting in incomplete conclusions. 'pathfindR' is a tool for enrichment analysis utilizing active subnetworks. The main function identifies active subnetworks in a protein-protein interaction network using a user-provided list of genes and associated p values. It then performs enrichment analyses on the identified subnetworks, identifying enriched terms (i.e. pathways or, more broadly, gene sets) that possibly underlie the phenotype of interest. 'pathfindR' also offers functionalities to cluster the enriched terms and identify representative terms in each cluster, to score the enriched terms per sample and to visualize analysis results. The enrichment, clustering and other methods implemented in 'pathfindR' are described in detail in Ulgen E, Ozisik O, Sezerman OU. 2019. 'pathfindR': An R Package for Comprehensive Identification of Enriched Pathways in Omics Data Through Active Subnetworks. Front. Genet. <doi:10.3389/fgene.2019.00858>.
Maintained by Ege Ulgen. Last updated 27 days ago.
active-subnetworksenrichmentpathwaypathway-enrichment-analysissubnetwork
10.7 match 186 stars 10.13 score 138 scriptsrstudio
connections:Integrates with the 'RStudio' Connections Pane and 'pins'
Enables 'DBI' compliant packages to integrate with the 'RStudio' connections pane, and the 'pins' package. It automates the display of schemata, tables, views, as well as the preview of the table's top 1000 records.
Maintained by Edgar Ruiz. Last updated 1 years ago.
connection-panedatabase-connectionpinsrstudio
13.5 match 57 stars 6.50 score 124 scripts 1 dependents
bioc
plyinteractions:Extending tidy verbs to genomic interactions
Operate on `GInteractions` objects as tabular data using `dplyr`-like verbs. The functions and methods in `plyinteractions` provide a grammatical approach to manipulate `GInteractions`, to facilitate their integration in genomic analysis workflows.
Maintained by Jacques Serizay. Last updated 5 months ago.
12.9 match 4.75 score 14 scripts
hughparsonage
hutils:Miscellaneous R Functions and Aliases
Provides utility functions for, and drawing on, the 'data.table' package. The package also collates useful miscellaneous functions extending base R not available elsewhere. The name is a portmanteau of 'utils' and the author.
Maintained by Hugh Parsonage. Last updated 2 years ago.
6.3 match 12 stars 7.76 score 219 scripts 8 dependents
colinfay
rpinterest:Access Pinterest API
Get information (boards, pins and users) from the Pinterest <http://www.pinterest.com> API.
Maintained by Colin Fay. Last updated 6 years ago.
8.4 match 10 stars 5.00 score 7 scripts
mhahsler
arules:Mining Association Rules and Frequent Itemsets
Provides the infrastructure for representing, manipulating and analyzing transaction data and patterns (frequent itemsets and association rules). Also provides C implementations of the association mining algorithms Apriori and Eclat. Hahsler, Gruen and Hornik (2005) <doi:10.18637/jss.v014.i15>.
Maintained by Michael Hahsler. Last updated 1 months ago.
arulesassociation-rulesfrequent-itemsets
3.0 match 194 stars 13.99 score 3.3k scripts 28 dependents
pdhoff
Rduino:A Microcontroller Interface
Functions for connecting to and interfacing with an 'Arduino' or similar device. Functionality includes uploading of sketches, setting and reading digital and analog pins, and rudimentary servo control. This project is not affiliated with the 'Arduino' company, <https://www.arduino.cc/>.
Maintained by Peter Hoff. Last updated 7 years ago.
8.5 match 3 stars 3.91 score 18 scripts
cboettig
contentid:An Interface for Content-Based Identifiers
An interface for creating, registering, and resolving content-based identifiers for data management. Content-based identifiers rely on the 'cryptographic' hashes to refer to the files they identify, thus, anyone possessing the file can compute the identifier using a well-known standard algorithm, such as 'SHA256'. By registering a URL at which the content is accessible to a public archive (such as Hash Archive) or depositing data in a scientific repository such 'Zenodo', 'DataONE' or 'SoftwareHeritage', the content identifier can serve many functions typically associated with A Digital Object Identifier ('DOI'). Unlike location-based identifiers like 'DOIs', content-based identifiers permit the same content to be registered in many locations.
Maintained by Carl Boettiger. Last updated 2 months ago.
3.3 match 46 stars 7.59 score 108 scripts 3 dependents
matthewwolak
nadiv:(Non)Additive Genetic Relatedness Matrices
Constructs (non)additive genetic relationship matrices, and their inverses, from a pedigree to be used in linear mixed effect models (A.K.A. the 'animal model'). Also includes other functions to facilitate the use of animal models. Some functions have been created to be used in conjunction with the R package 'asreml' for the 'ASReml' software, which can be obtained upon purchase from 'VSN' international (<https://vsni.co.uk/software/asreml>).
Maintained by Matthew Wolak. Last updated 10 months ago.
3.3 match 20 stars 7.13 score 151 scripts 3 dependents
rkoenker
quantreg:Quantile Regression
Estimation and inference methods for models for conditional quantile functions: Linear and nonlinear parametric and non-parametric (total variation penalized) models for conditional quantiles of a univariate response and several methods for handling censored survival data. Portfolio selection methods based on expected shortfall risk are also now included. See Koenker, R. (2005) Quantile Regression, Cambridge U. Press, <doi:10.1017/CBO9780511754098> and Koenker, R. et al. (2017) Handbook of Quantile Regression, CRC Press, <doi:10.1201/9781315120256>.
Maintained by Roger Koenker. Last updated 6 days ago.
1.5 match 18 stars 13.93 score 2.6k scripts 1.5k dependents
rudjer
SparseM:Sparse Linear Algebra
Some basic linear algebra functionality for sparse matrices is provided: including Cholesky decomposition and backsolving as well as standard R subsetting and Kronecker products.
Maintained by Roger Koenker. Last updated 8 months ago.
1.5 match 3 stars 11.47 score 306 scripts 1.5k dependents
ropensci
stats19:Work with Open Road Traffic Casualty Data from Great Britain
Tools to help download, process and analyse the UK road collision data collected using the 'STATS19' form. The datasets are provided as 'CSV' files with detailed road safety information about the circumstances of car crashes and other incidents on the roads resulting in casualties in Great Britain from 1979 to present. Tables are available on 'colissions' with the circumstances (e.g. speed limit of road), information about 'vehicles' involved (e.g. type of vehicle), and 'casualties' (e.g. age). The statistics relate only to events on public roads that were reported to the police, and subsequently recorded, using the 'STATS19' collision reporting form. See the Department for Transport website <https://www.data.gov.uk/dataset/cb7ae6f0-4be6-4935-9277-47e5ce24a11f/road-accidents-safety-data> for more information on these datasets. The package is described in a paper in the Journal of Open Source Software (Lovelace et al. 2019) <doi:10.21105/joss.01181>. See Gilardi et al. (2022) <doi:10.1111/rssa.12823>, Vidal-Tortosa et al. (2021) <doi:10.1016/j.jth.2021.101291>, and Tait et al. (2023) <doi:10.1016/j.aap.2022.106895> for examples of how the data can be used for methodological and empirical road safety research.
Maintained by Robin Lovelace. Last updated 2 months ago.
stats19road-safetytransportcar-crashesropenscidata
1.8 match 64 stars 9.20 score 193 scriptsbioc
OLIN:Optimized local intensity-dependent normalisation of two-color microarrays
Functions for normalisation of two-color microarrays by optimised local regression and for detection of artefacts in microarray data
Maintained by Matthias Futschik. Last updated 5 months ago.
microarraytwochannelqualitycontrolpreprocessingvisualization
3.4 match 4.78 score 2 scripts 1 dependents
mmahmoudian
varhandle:Functions for Robust Variable Handling
Variables are the fundamental parts of each programming language but handling them efficiently might be frustrating for programmers. This package contains some functions to help user (especially data explorers) to make more sense of their variables and take the most out of variables and hardware resources. These functions are written and crafted since 2014 with years of experience in statistical data analysis on high-dimensional data, and for each of them there was a need. Functions in this package are supposed to be efficient and easy to use, hence they will be frequently updated to make them more convenient.
Maintained by Mehrad Mahmoudian. Last updated 1 years ago.
2.3 match 6.18 score 572 scripts 6 dependents
camembr
microinverterdata:Collect your Microinverter Data
Collect and normalize local microinverter energy and power production data through off-cloud API requests. Currently supports 'APSystems', 'Enphase', and 'Fronius' microinverters.
Maintained by Christophe Regouby. Last updated 21 days ago.
2.7 match 1 stars 5.08 score 4 scripts
gardiners
pinbrowser:Interactively browse pins and their metadata in RStudio
Browse the content of boards created with the pins package. View and search available pins, view their metadata, and generate code to read pins into your current project.
Maintained by Sam Gardiner. Last updated 12 months ago.
7.8 match 1.70 scorebioc
trackViewer:A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data
Visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.
Maintained by Jianhong Ou. Last updated 2 months ago.
1.5 match 8.71 score 145 scripts 2 dependents
r-forge
cobs:Constrained B-Splines (Sparse Matrix Based)
Qualitatively Constrained (Regression) Smoothing Splines via Linear Programming and Sparse Matrices.
Maintained by Martin Maechler. Last updated 3 months ago.
1.6 match 7.44 score 134 scripts 18 dependentsropensci
phylotaR:Automated Phylogenetic Sequence Cluster Identification from 'GenBank'
A pipeline for the identification, within taxonomic groups, of orthologous sequence clusters from 'GenBank' <https://www.ncbi.nlm.nih.gov/genbank/> as the first step in a phylogenetic analysis. The pipeline depends on a local alignment search tool and is, therefore, not dependent on differences in gene naming conventions and naming errors.
Maintained by Shixiang Wang. Last updated 8 months ago.
blastngenbankpeer-reviewedphylogeneticssequence-alignment
2.0 match 23 stars 5.86 score 156 scripts
stla
shinyChakraUI:A Wrapper of the 'React' Library 'Chakra UI' for 'Shiny'
Makes the 'React' library 'Chakra UI' usable in 'Shiny' apps. 'Chakra UI' components include alert dialogs, drawers (sliding panels), menus, modals, popovers, sliders, and more.
Maintained by Stéphane Laurent. Last updated 3 years ago.
2.3 match 22 stars 4.98 score 87 scripts
cran
arulesSequences:Mining Frequent Sequences
Add-on for arules to handle and mine frequent sequences. Provides interfaces to the C++ implementation of cSPADE by Mohammed J. Zaki.
Maintained by Christian Buchta. Last updated 7 months ago.
3.0 match 12 stars 3.67 score 107 scripts
carpentries
sandpaper:Create and Curate Carpentries Lessons
We provide tools to build a Carpentries-themed lesson repository into an accessible standalone static website. These include local tools and those designed to be used in a continuous integration context so that all the lesson author needs to focus on is writing the content of the actual lesson.
Maintained by Robert Davey. Last updated 2 months ago.
carpentriescarpentries-infrastructurecarpentries-workbenchlesson-templatelessonsmarkdownstatic-site-generator
1.3 match 44 stars 7.72 score 8 scriptsbioc
iGC:An integrated analysis package of Gene expression and Copy number alteration
This package is intended to identify differentially expressed genes driven by Copy Number Alterations from samples with both gene expression and CNA data.
Maintained by Liang-Bo Wang. Last updated 5 months ago.
softwarebiological questiondifferentialexpressiongenomicvariationassaydomaincopynumbervariationgeneexpressionresearchfieldgeneticstechnologymicroarraysequencingworkflowstepmultiplecomparison
2.5 match 1 stars 3.78 score 1 scripts
certe-medical-epidemiology
certeprojects:A Certe R Package for Department Projects
A Certe R Package with functions to automate department projects using MS Teams, MS Planner, Shiny, R Markdown and Quarto. This package is part of the 'certedata' universe.
Maintained by Matthijs S. Berends. Last updated 10 days ago.
microsoft-azuremicrosoft-outlookmicrosoft-plannermicrosoft-teamsmicrosoft365microsoft365rquartoshinyteams
2.3 match 2 stars 4.16 score 1 scripts 3 dependents
csafe-isu
cmcR:An Implementation of the 'Congruent Matching Cells' Method
An open-source implementation of the 'Congruent Matching Cells' method for cartridge case identification as proposed by Song (2013) <https://tsapps.nist.gov/publication/get_pdf.cfm?pub_id=911193> as well as an extension of the method proposed by Tong et al. (2015) <doi:10.6028/jres.120.008>. Provides a wide range of pre, inter, and post-processing options when working with cartridge case scan data and their associated comparisons. See the cmcR package website for more details and examples.
Maintained by Joe Zemmels. Last updated 2 years ago.
1.6 match 4 stars 5.68 score 60 scripts
tidymodels
modeldatatoo:More Data Sets Useful for Modeling Examples
More data sets used for demonstrating or testing model-related packages are contained in this package. The data sets are downloaded and cached, allowing for more and bigger data sets.
Maintained by Emil Hvitfeldt. Last updated 12 months ago.
2.0 match 7 stars 4.60 score 38 scripts
murattinic
InfoTrad:Calculates the Probability of Informed Trading (PIN)
Estimates the probability of informed trading (PIN) initially introduced by Easley et. al. (1996) <doi:10.1111/j.1540-6261.1996.tb04074.x> . Contribution of the package is that it uses likelihood factorizations of Easley et. al. (2010) <doi:10.1017/S0022109010000074> (EHO factorization) and Lin and Ke (2011) <doi:10.1016/j.finmar.2011.03.001> (LK factorization). Moreover, the package uses different estimation algorithms. Specifically, the grid-search algorithm proposed by Yan and Zhang (2012) <doi:10.1016/j.jbankfin.2011.08.003> , hierarchical agglomerative clustering approach proposed by Gan et. al. (2015) <doi:10.1080/14697688.2015.1023336> and later extended by Ersan and Alici (2016) <doi:10.1016/j.intfin.2016.04.001> .
Maintained by Murat Tinic. Last updated 8 years ago.
8.7 match 1.00 score 9 scriptsropengov
hetu:Structural Handling of Finnish Personal Identity Codes
Structural handling of Finnish identity codes (natural persons and organizations); extract information, check ID validity and diagnostics.
Maintained by Pyry Kantanen. Last updated 3 months ago.
1.3 match 2 stars 4.86 score 18 scriptsropensci
rix:Reproducible Data Science Environments with 'Nix'
Simplifies the creation of reproducible data science environments using the 'Nix' package manager, as described in Dolstra (2006) <ISBN 90-393-4130-3>. The included `rix()` function generates a complete description of the environment as a `default.nix` file, which can then be built using 'Nix'. This results in project specific software environments with pinned versions of R, packages, linked system dependencies, and other tools. Additional helpers make it easy to run R code in 'Nix' software environments for testing and production.
Maintained by Bruno Rodrigues. Last updated 4 days ago.
nixpeer-reviewedreproducibilityreproducible-research
0.5 match 235 stars 10.54 score 67 scripts
wtkr
heritability:Marker-Based Estimation of Heritability Using Individual Plant or Plot Data
Implements marker-based estimation of heritability when observations on genetically identical replicates are available. These can be either observations on individual plants or plot-level data in a field trial. Heritability can then be estimated using a mixed model for the individual plant or plot data. For comparison, also mixed-model based estimation using genotypic means and estimation of repeatability with ANOVA are implemented. For illustration the package contains several datasets for the model species Arabidopsis thaliana.
Maintained by Willem Kruijer. Last updated 2 years ago.
1.6 match 2 stars 1.90 score 40 scripts
dkibalnikov
donutsk:Construct Advanced Donut Charts
Build donut/pie charts with 'ggplot2' layer by layer, exploiting the advantages of polar symmetry. Leverage layouts to distribute labels effectively. Connect labels to donut segments using pins. Streamline annotation and highlighting.
Maintained by Dmitry Kibalnikov. Last updated 11 months ago.
0.5 match 6 stars 5.18 score 2 scripts
rpodcast
shinystate:Customization of Shiny Bookmarkable State
Enhance the bookmarkable state feature of Shiny with additional customization such as storage location and storage repositories leveraging the pins package.
Maintained by Eric Nantz. Last updated 5 months ago.
0.5 match 3 stars 2.78 score 8 scripts