Showing 39 of total 39 results (show query)
s-fleck
rotor:Log Rotation and Conditional Backups
Conditionally rotate or back-up files based on their size or the date of the last backup; inspired by the 'Linux' utility 'logrotate'.
Maintained by Stefan Fleck. Last updated 2 years ago.
backuplogginglogrotatelogrotation
30.9 match 12 stars 3.78 score 10 scripts
paws-r
paws:Amazon Web Services Software Development Kit
Interface to Amazon Web Services <https://aws.amazon.com>, including storage, database, and compute services, such as 'Simple Storage Service' ('S3'), 'DynamoDB' 'NoSQL' database, and 'Lambda' functions-as-a-service.
Maintained by Dyfan Jones. Last updated 4 days ago.
7.6 match 332 stars 11.25 score 177 scripts 12 dependents
henrikbengtsson
R.utils:Various Programming Utilities
Utility functions useful when programming and developing R packages.
Maintained by Henrik Bengtsson. Last updated 1 years ago.
5.0 match 63 stars 13.74 score 5.7k scripts 814 dependents
ropensci
gitcellar:Helps Download Archives of GitHub Repositories
Provide functionality to download archives (backups) for all repositories in a GitHub organization (useful for backups!).
Maintained by Maรซlle Salmon. Last updated 1 months ago.
githubgithub-backupgithub-backups
15.9 match 16 stars 3.68 score 7 scriptspaws-r
paws.storage:'Amazon Web Services' Storage Services
Interface to 'Amazon Web Services' storage services, including 'Simple Storage Service' ('S3') and more <https://aws.amazon.com/>.
Maintained by Dyfan Jones. Last updated 4 days ago.
5.6 match 332 stars 9.75 score 17 scripts 18 dependents
markbravington
mvbutils:General utilities, workspace organization, code and docu editing, live package maintenance, etc
Hierarchical workspace tree, code editing and backup, easy package prep, editing of packages while loaded, per-object lazy-loading, easy documentation, macro functions, and miscellaneous utilities. Needed by debug package.
Maintained by Mark V. Bravington. Last updated 6 days ago.
6.8 match 6.53 score 138 scripts 18 dependents
bioc
ggbio:Visualization tools for genomic data
The ggbio package extends and specializes the grammar of graphics for biological data. The graphics are designed to answer common scientific questions, in particular those often asked of high throughput genomics data. All core Bioconductor data structures are supported, where appropriate. The package supports detailed views of particular genomic regions, as well as genome-wide overviews. Supported overviews include ideograms and grand linear views. High-level plots include sequence fragment length, edge-linked interval to data view, mismatch pileup, and several splicing summaries.
Maintained by Michael Lawrence. Last updated 5 months ago.
3.3 match 111 stars 12.26 score 734 scripts 17 dependents
syncrosim
rsyncrosim:The R Interface to 'SyncroSim'
'SyncroSim' is a generalized framework for managing scenario-based datasets (<https://syncrosim.com/>). 'rsyncrosim' provides an interface to 'SyncroSim'. Simulation models can be added to 'SyncroSim' in order to transform these datasets, taking advantage of general features such as defining scenarios of model inputs, running Monte Carlo simulations, and summarizing model outputs. 'rsyncrosim' requires 'SyncroSim' 2.3.5 or higher (API documentation: <https://docs.syncrosim.com/>).
Maintained by Katie Birchard. Last updated 9 days ago.
5.6 match 9 stars 7.09 score 189 scripts
eddelbuettel
RProtoBuf:R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3)
Protocol Buffers are a way of encoding structured data in an efficient yet extensible format. Google uses Protocol Buffers for almost all of its internal 'RPC' protocols and file formats. Additional documentation is available in two included vignettes one of which corresponds to our 'JSS' paper (2016, <doi:10.18637/jss.v071.i02>. A sufficiently recent version of 'Protocol Buffers' library is required; currently version 3.3.0 from 2017 is the stated minimum.
Maintained by Dirk Eddelbuettel. Last updated 5 hours ago.
c-plus-plusprotocol-buffersprotobufcpp
3.3 match 73 stars 11.44 score 126 scripts 21 dependents
obiba
opalr:'Opal' Data Repository Client and 'DataSHIELD' Utils
Data integration Web application for biobanks by 'OBiBa'. 'Opal' is the core database application for biobanks. Participant data, once collected from any data source, must be integrated and stored in a central data repository under a uniform model. 'Opal' is such a central repository. It can import, process, validate, query, analyze, report, and export data. 'Opal' is typically used in a research center to analyze the data acquired at assessment centres. Its ultimate purpose is to achieve seamless data-sharing among biobanks. This 'Opal' client allows to interact with 'Opal' web services and to perform operations on the R server side. 'DataSHIELD' administration tools are also provided.
Maintained by Yannick Marcon. Last updated 2 months ago.
3.8 match 3 stars 7.76 score 179 scripts 2 dependents
ecohealthalliance
airtabler:Interface to the Airtable API
Fork from Darko Bergant's package. Provides access to the Airtable (airtable.com) API.
Maintained by Collin Schwantes. Last updated 2 years ago.
5.9 match 5 stars 4.46 score 58 scripts
pauljohn32
kutils:Project Management Tools
Tools for data importation, recoding, and inspection. There are functions to create new project folders, R code templates, create uniquely named output directories, and to quickly obtain a visual summary for each variable in a data frame. The main feature here is the systematic implementation of the "variable key" framework for data importation and recoding. We are eager to have community feedback about the variable key and the vignette about it. In version 1.7, the function 'semTable' is removed. It was deprecated since 1.67. That is provided in a separate package, 'semTable'.
Maintained by Paul Johnson. Last updated 1 years ago.
4.0 match 5.85 score 110 scripts 20 dependents
mlr-org
mlr3tuning:Hyperparameter Optimization for 'mlr3'
Hyperparameter optimization package of the 'mlr3' ecosystem. It features highly configurable search spaces via the 'paradox' package and finds optimal hyperparameter configurations for any 'mlr3' learner. 'mlr3tuning' works with several optimization algorithms e.g. Random Search, Iterated Racing, Bayesian Optimization (in 'mlr3mbo') and Hyperband (in 'mlr3hyperband'). Moreover, it can automatically optimize learners and estimate the performance of optimized models with nested resampling.
Maintained by Marc Becker. Last updated 3 months ago.
bbotkhyperparameter-optimizationhyperparameter-tuningmachine-learningmlr3optimizationtunetuning
1.9 match 55 stars 11.59 score 384 scripts 11 dependentsbioc
bigmelon:Illumina methylation array analysis for large experiments
Methods for working with Illumina arrays using gdsfmt.
Maintained by Leonard C. Schalkwyk. Last updated 5 months ago.
dnamethylationmicroarraytwochannelpreprocessingqualitycontrolmethylationarraydataimportcpgisland
3.9 match 5.47 score 21 scripts
luckinet
arealDB:Harmonise and Integrate Heterogeneous Areal Data
Many relevant applications in the environmental and socioeconomic sciences use areal data, such as biodiversity checklists, agricultural statistics, or socioeconomic surveys. For applications that surpass the spatial, temporal or thematic scope of any single data source, data must be integrated from several heterogeneous sources. Inconsistent concepts, definitions, or messy data tables make this a tedious and error-prone process. 'arealDB' tackles those problems and helps the user to integrate a harmonised databases of areal data. Read the paper at Ehrmann, Seppelt & Meyer (2020) <doi:10.1016/j.envsoft.2020.104799>.
Maintained by Steffen Ehrmann. Last updated 1 months ago.
3.8 match 2 stars 5.41 score 15 scriptsmlr-org
bbotk:Black-Box Optimization Toolkit
Features highly configurable search spaces via the 'paradox' package and optimizes every user-defined objective function. The package includes several optimization algorithms e.g. Random Search, Iterated Racing, Bayesian Optimization (in 'mlr3mbo') and Hyperband (in 'mlr3hyperband'). bbotk is the base package of 'mlr3tuning', 'mlr3fselect' and 'miesmuschel'.
Maintained by Marc Becker. Last updated 3 months ago.
bbotkblack-box-optimizationdata-sciencehyperparameter-optimizationhyperparameter-tuningmachine-learningmlr3optimization
2.0 match 22 stars 9.87 score 166 scripts 14 dependents
paws-r
paws.networking:'Amazon Web Services' Networking & Content Delivery Services
Interface to 'Amazon Web Services' networking and content delivery services, including 'Route 53' Domain Name System service, 'CloudFront' content delivery, load balancing, and more <https://aws.amazon.com/>.
Maintained by Dyfan Jones. Last updated 4 days ago.
2.0 match 332 stars 9.05 score 13 dependents
wlandau
crew:A Distributed Worker Launcher Framework
In computationally demanding analysis projects, statisticians and data scientists asynchronously deploy long-running tasks to distributed systems, ranging from traditional clusters to cloud services. The 'NNG'-powered 'mirai' R package by Gao (2023) <doi:10.5281/zenodo.7912722> is a sleek and sophisticated scheduler that efficiently processes these intense workloads. The 'crew' package extends 'mirai' with a unifying interface for third-party worker launchers. Inspiration also comes from packages. 'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>, 'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>, 'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>), and 'batchtools' by Lang, Bischel, and Surmann (2017) <doi:10.21105/joss.00135>.
Maintained by William Michael Landau. Last updated 2 days ago.
1.5 match 136 stars 11.19 score 243 scripts 2 dependents
rte-antares-rpackage
antaresEditObject:Edit an 'Antares' Simulation
Edit an 'Antares' simulation before running it : create new areas, links, thermal clusters or binding constraints or edit existing ones. Update 'Antares' general & optimization settings. 'Antares' is an open source power system generator, more information available here : <https://antares-simulator.org/>.
Maintained by Tatiana Vargas. Last updated 28 days ago.
antares-simulationclusterenergymonte-carlo-simulationrte
1.9 match 8 stars 8.76 score 101 scriptsropensci
taxlist:Handling Taxonomic Lists
Handling taxonomic lists through objects of class 'taxlist'. This package provides functions to import species lists from 'Turboveg' (<https://www.synbiosys.alterra.nl/turboveg/>) and the possibility to create backups from resulting R-objects. Also quick displays are implemented as summary-methods.
Maintained by Miguel Alvarez. Last updated 6 months ago.
2.3 match 12 stars 7.07 score 81 scripts 2 dependentsmlr-org
mlr3fselect:Feature Selection for 'mlr3'
Feature selection package of the 'mlr3' ecosystem. It selects the optimal feature set for any 'mlr3' learner. The package works with several optimization algorithms e.g. Random Search, Recursive Feature Elimination, and Genetic Search. Moreover, it can automatically optimize learners and estimate the performance of optimized feature sets with nested resampling.
Maintained by Marc Becker. Last updated 2 months ago.
evolutionary-algorithmsexhaustive-searchfeature-selectionmachine-learningmlr3optimizationrandom-searchrecursive-feature-eliminationsequential-feature-selection
1.9 match 23 stars 8.25 score 70 scripts 2 dependents
giocomai
rbackupr:An R package to backup folders to Google Drive with limited permissions
Backup files and folders to Google Drive without giving access to all of your drive.
Maintained by Giorgio Comai. Last updated 1 years ago.
5.6 match 1 stars 2.70 score
pachadotdev
analogsea:Interface to 'DigitalOcean'
Provides a set of functions for interacting with the 'DigitalOcean' API <https://www.digitalocean.com/>, including creating images, destroying them, rebooting, getting details on regions, and available images.
Maintained by Mauricio Vargas. Last updated 2 years ago.
1.9 match 159 stars 7.56 score 100 scripts 1 dependentseddelbuettel
binb:'binb' is not 'Beamer'
A collection of 'LaTeX' styles using 'Beamer' customization for pdf-based presentation slides in 'RMarkdown'. At present it contains 'RMarkdown' adaptations of the LaTeX themes 'Metropolis' (formerly 'mtheme') theme by Matthias Vogelgesang and others (now included in 'TeXLive'), the 'IQSS' them by Ista Zahn (which is included here), and the 'Monash' theme by Rob J Hyndman. Additional (free) fonts may be needed: 'Metropolis' prefers 'Fira', and 'IQSS' requires 'Libertinus'.
Maintained by Dirk Eddelbuettel. Last updated 3 months ago.
beamerbeamer-presentationbeamer-thememarkdownpdfrmarkdownrmarkdown-beamer
1.5 match 189 stars 8.31 score 2 scripts 2 dependentsbioc
RMassBank:Workflow to process tandem MS files and build MassBank records
Workflow to process tandem MS files and build MassBank records. Functions include automated extraction of tandem MS spectra, formula assignment to tandem MS fragments, recalibration of tandem MS spectra with assigned fragments, spectrum cleanup, automated retrieval of compound information from Internet databases, and export to MassBank records.
Maintained by RMassBank at Eawag. Last updated 5 months ago.
immunooncologybioinformaticsmassspectrometrymetabolomicssoftwareopenjdk
2.0 match 6.19 score 26 scripts
brodieg
unitizer:Interactive R Unit Tests
Simplifies regression tests by comparing objects produced by test code with earlier versions of those same objects. If objects are unchanged the tests pass, otherwise execution stops with error details. If in interactive mode, tests can be reviewed through the provided interactive environment.
Maintained by Brodie Gaslam. Last updated 10 months ago.
1.3 match 39 stars 7.18 score 84 scripts
p-chevallier
htsr:Hydro-Meteorology Time-Series
Functions for the management and treatment of hydrology and meteorology time-series stored in a 'Sqlite' data base.
Maintained by Pierre Chevallier. Last updated 7 months ago.
2.0 match 4.60 score 2 scriptsgiocomai
castarter:Content Analysis Starter Toolkit
Consistent approaches for basic web scraping, text mining and word frequency analysis of textual datasets
Maintained by Giorgio Comai. Last updated 1 days ago.
1.9 match 3 stars 4.52 score 2 scripts
kwb-r
kwb.nextcloud:R Package for Accessing Nextcloud Using WebDAV API
R package to access file infos or download data from an Nextcloud instance using the WebDav API (https://docs.nextcloud.com/server/17/developer_manual/client_apis/WebDAV/).
Maintained by Michael Rustler. Last updated 5 months ago.
apinextcloudproject-dwcproject-ultimate
1.8 match 6 stars 4.43 score 2 scripts 3 dependents
mpi-bgc-functional-biogeography
rtry:Preprocessing Plant Trait Data
Designed to support the application of plant trait data providing easy applicable functions for the basic steps of data preprocessing, e.g. data import, data exploration, selection of columns and rows, excluding trait data according to different attributes, geocoding, long- to wide-table transformation, and data export. 'rtry' was initially developed as part of the TRY R project to preprocess trait data received via the TRY database.
Maintained by Olee Hoi Ying Lam. Last updated 2 years ago.
1.3 match 24 stars 5.94 score 24 scripts
poissonconsulting
subfoldr2:Save and Load R Objects
Facilitates saving and loading R objects, data frames, tables, plots, text blocks and numbers to subfolders.
Maintained by Joe Thorley. Last updated 14 days ago.
2.0 match 2 stars 3.70 score 5 scripts
km4ivi
whSample:Utilities for Sampling
Interactive tools for generating random samples. Users select an .xlsx, .csv, or delimited .txt file with population data and are walked through selecting the sample type (Simple Random Sample or Stratified), the number of backups desired, and a "stratify_on" value (if desired). The sample size is determined using a normal approximation to the hypergeometric distribution based on Nicholson (1956) <doi:10.1214/aoms/1177728270>. An .xlsx file is created with the sample and key metadata for reference. It is menu-driven and lets users pick an output directory. See vignettes for a detailed walk-through.
Maintained by Paul West. Last updated 4 years ago.
1.8 match 4.00 score 5 scripts
jimbrig
jimstools:Tools for R
What the package does (one paragraph).
Maintained by Jimmy Briggs. Last updated 3 years ago.
2.0 match 2 stars 3.00 score 2 scripts
terminological
pkgtools:Code generation and linting functions for R packages
Perform common tasks and fix common errors in project and package development. This is a developer tool rather than an end user package.
Maintained by Robert Challen. Last updated 1 years ago.
1.8 match 1 stars 1.70 score
janlisec
eCerto:Statistical Tests for the Production of Reference Materials
The production of certified reference materials (CRMs) requires various statistical tests depending on the task and recorded data to ensure that reported values of CRMs are appropriate. Often these tests are performed according to the procedures described in 'ISO GUIDE 35:2017'. The 'eCerto' package contains a 'Shiny' app which provides functionality to load, process, report and backup data recorded during CRM production and facilitates following the recommended procedures. It is described in Lisec et al (2023) <doi:10.1007/s00216-023-05099-3> and can also be accessed online <https://apps.bam.de/shn00/eCerto/> without package installation.
Maintained by Jan Lisec. Last updated 5 days ago.
0.5 match 4.06 score 2 scripts
special-uor
dabr:Database Management with R
Provides functions to manage databases: select, update, insert, and delete records, list tables, backup tables as CSV files, and import CSV files as tables.
Maintained by Roberto Villegas-Diaz. Last updated 2 years ago.
0.5 match 4 stars 3.30 score
jto888
stosim:Stochastic Simulator for Reliability Modeling of Repairable Systems
A toolkit for Reliability Availability and Maintainability (RAM) modeling of industrial process systems.
Maintained by Jacob Ormerod. Last updated 2 years ago.
1.7 match 1.00 score 4 scripts
alrobles
mddmaps:Download World Mammal Maps
Lightweight maps of mammals of the world. These maps are a comprehensive collection of maps aligned with the Mammal Diversity Database taxonomy of the American Society of Mammalogists. They are generated at low resolution for easy access, consultation and manipulation in shapefile format. The package connects to a binary backup hosted in the Digital Ocean cloud service and allows individual or batch download of any mammal species in the mdd taxonomy by providing the scientific species name.
Maintained by Angel Robles. Last updated 10 months ago.
0.5 match 1 stars 1.70 score