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ropensci
canaper:Categorical Analysis of Neo- And Paleo-Endemism
Provides functions to analyze the spatial distribution of biodiversity, in particular categorical analysis of neo- and paleo-endemism (CANAPE) as described in Mishler et al (2014) <doi:10.1038/ncomms5473>. 'canaper' conducts statistical tests to determine the types of endemism that occur in a study area while accounting for the evolutionary relationships of species.
Maintained by Joel H. Nitta. Last updated 2 years ago.
86.7 match 7 stars 5.38 score 23 scripts
matthewkling
phylospatial:Spatial Phylogenetic Analysis
Conduct various analyses on spatial phylogenetics. Use your data on an evolutionary tree and geographic distributions of the terminal taxa to compute diversity and endemism metrics, test significance with null model randomization, analyze community turnover and biotic regionalization, and perform spatial conservation prioritizations. All functions support quantitative community data in addition to binary data.
Maintained by Matthew Kling. Last updated 4 days ago.
5.5 match 6 stars 6.16 score 9 scripts
gabferreira
phyloraster:Evolutionary Diversity Metrics for Raster Data
Phylogenetic Diversity (PD, Faith 1992), Evolutionary Distinctiveness (ED, Isaac et al. 2007), Phylogenetic Endemism (PE, Rosauer et al. 2009; Laffan et al. 2016), and Weighted Endemism (WE, Laffan et al. 2016) for presence-absence raster. Faith, D. P. (1992) <doi:10.1016/0006-3207(92)91201-3> Isaac, N. J. et al. (2007) <doi:10.1371/journal.pone.0000296> Laffan, S. W. et al. (2016) <doi:10.1111/2041-210X.12513> Rosauer, D. et al. (2009) <doi:10.1111/j.1365-294X.2009.04311.x>.
Maintained by Gabriela Alves-Ferreira. Last updated 16 days ago.
4.3 match 7 stars 5.66 score 33 scripts