Showing 118 of total 118 results (show query)
kwstat
pals:Color Palettes, Colormaps, and Tools to Evaluate Them
A comprehensive collection of color palettes, colormaps, and tools to evaluate them. See Kovesi (2015) <doi:10.48550/arXiv.1509.03700>.
Maintained by Kevin Wright. Last updated 9 days ago.
40.5 match 83 stars 11.39 score 2.1k scripts 8 dependents
martinschobben
oceanexplorer:Explore Our Planet's Oceans with NOAA
Provides tools for easy exploration of the world ocean atlas of the US agency National Oceanic and Atmospheric Administration (NOAA). It includes functions to extract NetCDF data from the repository and code to visualize several physical and chemical parameters of the ocean. A Shiny app further allows interactive exploration of the data. The methods for data collecting and quality checks are described in several papers, which can be found here: <https://www.ncei.noaa.gov/products/world-ocean-atlas>.
Maintained by Martin Schobben. Last updated 1 years ago.
earthearth-observationearth-sciencenoaanoaa-dataoceanocean-sciencesoceanographyopen-datashinyspatialspatial-analysisspatial-data
30.1 match 9 stars 5.01 score 23 scripts
pbs-software
PBSmapping:Mapping Fisheries Data and Spatial Analysis Tools
This software has evolved from fisheries research conducted at the Pacific Biological Station (PBS) in 'Nanaimo', British Columbia, Canada. It extends the R language to include two-dimensional plotting features similar to those commonly available in a Geographic Information System (GIS). Embedded C code speeds algorithms from computational geometry, such as finding polygons that contain specified point events or converting between longitude-latitude and Universal Transverse Mercator (UTM) coordinates. Additionally, we include 'C++' code developed by Angus Johnson for the 'Clipper' library, data for a global shoreline, and other data sets in the public domain. Under the user's R library directory '.libPaths()', specifically in './PBSmapping/doc', a complete user's guide is offered and should be consulted to use package functions effectively.
Maintained by Rowan Haigh. Last updated 6 months ago.
12.2 match 11 stars 10.29 score 652 scripts 9 dependents
dankelley
oce:Analysis of Oceanographic Data
Supports the analysis of Oceanographic data, including 'ADCP' measurements, measurements made with 'argo' floats, 'CTD' measurements, sectional data, sea-level time series, coastline and topographic data, etc. Provides specialized functions for calculating seawater properties such as potential temperature in either the 'UNESCO' or 'TEOS-10' equation of state. Produces graphical displays that conform to the conventions of the Oceanographic literature. This package is discussed extensively by Kelley (2018) "Oceanographic Analysis with R" <doi:10.1007/978-1-4939-8844-0>.
Maintained by Dan Kelley. Last updated 1 days ago.
7.1 match 146 stars 15.42 score 4.2k scripts 18 dependents
ocean-tracking-network
glatos:A package for the Great Lakes Acoustic Telemetry Observation System
Functions useful to members of the Great Lakes Acoustic Telemetry Observation System https://glatos.glos.us; many more broadly relevant to simulating, processing, analysing, and visualizing acoustic telemetry data.
Maintained by Christopher Holbrook. Last updated 6 months ago.
16.0 match 10 stars 6.38 score 112 scripts
blue-matter
MSEtool:Management Strategy Evaluation Toolkit
Development, simulation testing, and implementation of management procedures for fisheries (see Carruthers & Hordyk (2018) <doi:10.1111/2041-210X.13081>).
Maintained by Adrian Hordyk. Last updated 26 days ago.
10.6 match 8 stars 7.69 score 163 scripts 3 dependents
cjvanlissa
tidySEM:Tidy Structural Equation Modeling
A tidy workflow for generating, estimating, reporting, and plotting structural equation models using 'lavaan', 'OpenMx', or 'Mplus'. Throughout this workflow, elements of syntax, results, and graphs are represented as 'tidy' data, making them easy to customize. Includes functionality to estimate latent class analyses, and to plot 'dagitty' and 'igraph' objects.
Maintained by Caspar J. van Lissa. Last updated 7 days ago.
7.1 match 58 stars 10.69 score 330 scripts 1 dependents
cran
oceanic:Location Identify Tool
Determine the sea area where the fishing boat operates. The latitude and longitude of geographic coordinates are used to match oceanic areas and economic sea areas. You can plot the distribution map with dotplot() function. Please refer to Flanders Marine Institute (2020) <doi:10.14284/403>.
Maintained by shiao chih hao. Last updated 2 months ago.
50.5 match 1.30 score
karlines
plot3D:Plotting Multi-Dimensional Data
Functions for viewing 2-D and 3-D data, including perspective plots, slice plots, surface plots, scatter plots, etc. Includes data sets from oceanography.
Maintained by Karline Soetaert. Last updated 1 years ago.
6.8 match 3 stars 9.59 score 2.1k scripts 78 dependents
rstudio
leaflet:Create Interactive Web Maps with the JavaScript 'Leaflet' Library
Create and customize interactive maps using the 'Leaflet' JavaScript library and the 'htmlwidgets' package. These maps can be used directly from the R console, from 'RStudio', in Shiny applications and R Markdown documents.
Maintained by Joe Cheng. Last updated 13 days ago.
3.8 match 821 stars 17.20 score 39k scripts 178 dependents
fishr-core-team
FSAdata:Data to Support Fish Stock Assessment ('FSA') Package
The datasets to support the Fish Stock Assessment ('FSA') package.
Maintained by Derek Ogle. Last updated 2 years ago.
fishfisheriesfisheries-stock-assessmentfishr-websitestock-assessment
10.3 match 13 stars 5.75 score 285 scripts
rsetienne
DAISIE:Dynamical Assembly of Islands by Speciation, Immigration and Extinction
Simulates and computes the (maximum) likelihood of a dynamical model of island biota assembly through speciation, immigration and extinction. See Valente et al. (2015) <doi:10.1111/ele.12461>.
Maintained by Rampal S. Etienne. Last updated 1 months ago.
6.7 match 9 stars 8.59 score 55 scripts 1 dependents
staffanbetner
rethinking:Statistical Rethinking book package
Utilities for fitting and comparing models
Maintained by Richard McElreath. Last updated 3 months ago.
10.0 match 5.42 score 4.4k scripts
ropensci
bowerbird:Keep a Collection of Sparkly Data Resources
Tools to get and maintain a data repository from third-party data providers.
Maintained by Ben Raymond. Last updated 5 days ago.
ropensciantarcticsouthern oceandataenvironmentalsatelliteclimatepeer-reviewed
7.5 match 50 stars 7.16 score 16 scripts 1 dependents
dsstoffer
astsa:Applied Statistical Time Series Analysis
Contains data sets and scripts for analyzing time series in both the frequency and time domains including state space modeling as well as supporting the texts Time Series Analysis and Its Applications: With R Examples (5th ed), by R.H. Shumway and D.S. Stoffer. Springer Texts in Statistics, 2025, <https://link.springer.com/book/9783031705830>, and Time Series: A Data Analysis Approach Using R. Chapman-Hall, 2019, <DOI:10.1201/9780429273285>.
Maintained by David Stoffer. Last updated 2 months ago.
6.8 match 7 stars 7.88 score 2.2k scripts 8 dependents
njtierney
naniar:Data Structures, Summaries, and Visualisations for Missing Data
Missing values are ubiquitous in data and need to be explored and handled in the initial stages of analysis. 'naniar' provides data structures and functions that facilitate the plotting of missing values and examination of imputations. This allows missing data dependencies to be explored with minimal deviation from the common work patterns of 'ggplot2' and tidy data. The work is fully discussed at Tierney & Cook (2023) <doi:10.18637/jss.v105.i07>.
Maintained by Nicholas Tierney. Last updated 4 days ago.
data-visualisationggplot2missing-datamissingnesstidy-data
3.4 match 657 stars 15.63 score 5.1k scripts 9 dependents
boshek
rsoi:Import Various Northern and Southern Hemisphere Climate Indices
Downloads Southern Oscillation Index, Oceanic Nino Index, North Pacific Gyre Oscillation data, North Atlantic Oscillation and Arctic Oscillation. Data sources are described in the help files for each function.
Maintained by Sam Albers. Last updated 1 years ago.
11.5 match 19 stars 4.48 score 32 scripts
maarten14c
rbacon:Age-Depth Modelling using Bayesian Statistics
An approach to age-depth modelling that uses Bayesian statistics to reconstruct accumulation histories for deposits, through combining radiocarbon and other dates with prior information on accumulation rates and their variability. See Blaauw & Christen (2011).
Maintained by Maarten Blaauw. Last updated 26 days ago.
age-depth-modelbayesianholocenelakesocean-sedimentspeatradiocarbon-calibrationcpp
7.5 match 7 stars 6.75 score 57 scripts 1 dependents
statistikat
VIM:Visualization and Imputation of Missing Values
New tools for the visualization of missing and/or imputed values are introduced, which can be used for exploring the data and the structure of the missing and/or imputed values. Depending on this structure of the missing values, the corresponding methods may help to identify the mechanism generating the missing values and allows to explore the data including missing values. In addition, the quality of imputation can be visually explored using various univariate, bivariate, multiple and multivariate plot methods. A graphical user interface available in the separate package VIMGUI allows an easy handling of the implemented plot methods.
Maintained by Matthias Templ. Last updated 7 months ago.
hotdeckimputation-methodsmodel-predictionsvisualizationcpp
3.5 match 85 stars 14.44 score 2.6k scripts 19 dependents
aphalo
photobiologyInOut:Read Spectral and Logged Data from Foreign Files
Functions for reading, and in some cases writing, foreign files containing spectral data from spectrometers and their associated software, output from daylight simulation models in common use, and some spectral data repositories. As well as functions for exchange of spectral data with other R packages. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Maintained by Pedro J. Aphalo. Last updated 17 days ago.
7.7 match 6.32 score 63 scripts 1 dependents
schochastics
networkdata:Repository of Network Datasets
The package contains a large collection of network dataset with different context. This includes social networks, animal networks and movie networks. All datasets are in 'igraph' format.
Maintained by David Schoch. Last updated 12 months ago.
9.0 match 143 stars 5.01 score 143 scriptsaphalo
ooacquire:Acquire Data from OO Spectrometers
Functions to acquire data directly from Ocean Optics spectrometers, and functions to read similar data from files. Functions to convert raw-counts into counts-per-second and physical quantities. Data are saved in objects of classes defined in package 'photobiology'. The instrument settings, instrument description, date-time of acquisition and optionally goecode are stored as attributes.
Maintained by Pedro J. Aphalo. Last updated 2 months ago.
data-acquisitiondata-importr4photobiologyspectracpp
8.7 match 1 stars 5.17 score 93 scripts
flyaflya
causact:Fast, Easy, and Visual Bayesian Inference
Accelerate Bayesian analytics workflows in 'R' through interactive modelling, visualization, and inference. Define probabilistic graphical models using directed acyclic graphs (DAGs) as a unifying language for business stakeholders, statisticians, and programmers. This package relies on interfacing with the 'numpyro' python package.
Maintained by Adam Fleischhacker. Last updated 2 months ago.
bayesian-inferencedagsposterior-probabilityprobabilistic-graphical-modelsprobabilistic-programming
6.2 match 45 stars 7.15 score 52 scripts
pachadotdev
analogsea:Interface to 'DigitalOcean'
Provides a set of functions for interacting with the 'DigitalOcean' API <https://www.digitalocean.com/>, including creating images, destroying them, rebooting, getting details on regions, and available images.
Maintained by Mauricio Vargas. Last updated 2 years ago.
5.6 match 159 stars 7.56 score 100 scripts 1 dependents
ggobi
tourr:Tour Methods for Multivariate Data Visualisation
Implements geodesic interpolation and basis generation functions that allow you to create new tour methods from R.
Maintained by Dianne Cook. Last updated 17 days ago.
3.8 match 65 stars 11.17 score 426 scripts 9 dependents
joshualerickson
gwavr:Get Water Attributes Visually in R
Provides methods to Get Water Attributes Visually in R ('gwavr'). This allows the user to point and click on areas within the United States and get back hydrological data, e.g. flowlines, catchments, basin boundaries, comids, etc.
Maintained by Joshua Erickson. Last updated 23 days ago.
8.3 match 17 stars 5.01 score 7 scripts
robinhankin
hyper2:The Hyperdirichlet Distribution, Mark 2
A suite of routines for the hyperdirichlet distribution and reified Bradley-Terry; supersedes the 'hyperdirichlet' package; uses 'disordR' discipline <doi:10.48550/ARXIV.2210.03856>. To cite in publications please use Hankin 2017 <doi:10.32614/rj-2017-061>, and for Generalized Plackett-Luce likelihoods use Hankin 2024 <doi:10.18637/jss.v109.i08>.
Maintained by Robin K. S. Hankin. Last updated 3 days ago.
6.9 match 5 stars 6.01 score 38 scripts 1 dependents
lightbluetitan
timeSeriesDataSets:Time Series Data Sets
Provides a diverse collection of time series datasets spanning various fields such as economics, finance, energy, healthcare, and more. Designed to support time series analysis in R by offering datasets from multiple disciplines, making it a valuable resource for researchers and analysts.
Maintained by Renzo Caceres Rossi. Last updated 6 months ago.
6.8 match 10 stars 5.71 score 103 scriptsdankelley
ocedata:Oceanographic Data Sets for 'oce' Package
Several Oceanographic data sets are provided for use by the 'oce' package, and for other purposes.
Maintained by Dan Kelley. Last updated 2 years ago.
7.1 match 8 stars 5.07 score 146 scripts
scar
sohungry:Southern Ocean Diet and Energetics Data
Provides access to data from the SCAR Southern Ocean Diet and Energetics Database.
Maintained by Ben Raymond. Last updated 1 years ago.
9.9 match 5 stars 3.40 score 8 scripts
frbcesab
forcis:An R Client to Access the FORCIS Database
Provides an interface to the FORCIS database (<https://zenodo.org/doi/10.5281/zenodo.7390791>) on global foraminifera distribution. This package allows to download and to handle FORCIS data. It is part of the FRB-CESAB working group FORCIS. <https://www.fondationbiodiversite.fr/en/the-frb-in-action/programs-and-projects/le-cesab/forcis/>.
Maintained by Nicolas Casajus. Last updated 11 days ago.
5.3 match 4 stars 5.76 score 5 scriptsropensci
osmplotr:Bespoke Images of 'OpenStreetMap' Data
Bespoke images of 'OpenStreetMap' ('OSM') data and data visualisation using 'OSM' objects.
Maintained by Mark Padgham. Last updated 26 days ago.
data-visualisationhighlighting-clustersopenstreetmaposmoverpassoverpass-apipeer-reviewed
3.8 match 138 stars 7.97 score 80 scriptsropensci
antanym:Antarctic Geographic Place Names
Antarctic geographic names from the Composite Gazetteer of Antarctica, and functions for working with those place names.
Maintained by Ben Raymond. Last updated 3 years ago.
antarcticsouthern oceanplace namesgazetteerpeer-reviewed
7.5 match 7 stars 3.89 score 22 scripts
millerlp
oceanwaves:Ocean Wave Statistics
Calculate ocean wave height summary statistics and process data from bottom-mounted pressure sensor data loggers. Derived primarily from MATLAB functions provided by U. Neumeier at <http://neumeier.perso.ch/matlab/waves.html>. Wave number calculation based on the algorithm in Hunt, J. N. (1979, ISSN:0148-9895) "Direct Solution of Wave Dispersion Equation", American Society of Civil Engineers Journal of the Waterway, Port, Coastal, and Ocean Division, Vol 105, pp 457-459.
Maintained by Luke Miller. Last updated 4 years ago.
5.8 match 9 stars 4.65 score 10 scripts
iobis
robis:Ocean Biodiversity Information System (OBIS) Client
Client for the Ocean Biodiversity Information System (<https://obis.org>).
Maintained by Pieter Provoost. Last updated 1 years ago.
3.5 match 41 stars 7.54 score 282 scripts
joeguinness
GpGp:Fast Gaussian Process Computation Using Vecchia's Approximation
Functions for fitting and doing predictions with Gaussian process models using Vecchia's (1988) approximation. Package also includes functions for reordering input locations, finding ordered nearest neighbors (with help from 'FNN' package), grouping operations, and conditional simulations. Covariance functions for spatial and spatial-temporal data on Euclidean domains and spheres are provided. The original approximation is due to Vecchia (1988) <http://www.jstor.org/stable/2345768>, and the reordering and grouping methods are from Guinness (2018) <doi:10.1080/00401706.2018.1437476>. Model fitting employs a Fisher scoring algorithm described in Guinness (2019) <doi:10.48550/arXiv.1905.08374>.
Maintained by Joseph Guinness. Last updated 5 months ago.
3.6 match 10 stars 6.16 score 160 scripts 6 dependents
stan-dev
loo:Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian Models
Efficient approximate leave-one-out cross-validation (LOO) for Bayesian models fit using Markov chain Monte Carlo, as described in Vehtari, Gelman, and Gabry (2017) <doi:10.1007/s11222-016-9696-4>. The approximation uses Pareto smoothed importance sampling (PSIS), a new procedure for regularizing importance weights. As a byproduct of the calculations, we also obtain approximate standard errors for estimated predictive errors and for the comparison of predictive errors between models. The package also provides methods for using stacking and other model weighting techniques to average Bayesian predictive distributions.
Maintained by Jonah Gabry. Last updated 3 days ago.
bayesbayesianbayesian-data-analysisbayesian-inferencebayesian-methodsbayesian-statisticscross-validationinformation-criterionmodel-comparisonstan
1.3 match 152 stars 17.30 score 2.6k scripts 297 dependents
svmiller
stevedata:Steve's Toy Data for Teaching About a Variety of Methodological, Social, and Political Topics
This is a collection of various kinds of data with broad uses for teaching. My students, and academics like me who teach the same topics I teach, should find this useful if their teaching workflow is also built around the R programming language. The applications are multiple but mostly cluster on topics of statistical methodology, international relations, and political economy.
Maintained by Steve Miller. Last updated 4 days ago.
3.5 match 8 stars 5.97 score 178 scripts
bioc
ComplexHeatmap:Make Complex Heatmaps
Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.
Maintained by Zuguang Gu. Last updated 5 months ago.
softwarevisualizationsequencingclusteringcomplex-heatmapsheatmap
1.1 match 1.3k stars 16.93 score 16k scripts 151 dependents
clbustos
dominanceanalysis:Dominance Analysis
Dominance analysis is a method that allows to compare the relative importance of predictors in multiple regression models: ordinary least squares, generalized linear models, hierarchical linear models, beta regression and dynamic linear models. The main principles and methods of dominance analysis are described in Budescu, D. V. (1993) <doi:10.1037/0033-2909.114.3.542> and Azen, R., & Budescu, D. V. (2003) <doi:10.1037/1082-989X.8.2.129> for ordinary least squares regression. Subsequently, the extensions for multivariate regression, logistic regression and hierarchical linear models were described in Azen, R., & Budescu, D. V. (2006) <doi:10.3102/10769986031002157>, Azen, R., & Traxel, N. (2009) <doi:10.3102/1076998609332754> and Luo, W., & Azen, R. (2013) <doi:10.3102/1076998612458319>, respectively.
Maintained by Claudio Bustos Navarrete. Last updated 1 years ago.
3.3 match 25 stars 5.75 score 45 scriptskarlines
marelac:Tools for Aquatic Sciences
Datasets, constants, conversion factors, and utilities for 'MArine', 'Riverine', 'Estuarine', 'LAcustrine' and 'Coastal' science. The package contains among others: (1) chemical and physical constants and datasets, e.g. atomic weights, gas constants, the earths bathymetry; (2) conversion factors (e.g. gram to mol to liter, barometric units, temperature, salinity); (3) physical functions, e.g. to estimate concentrations of conservative substances, gas transfer and diffusion coefficients, the Coriolis force and gravity; (4) thermophysical properties of the seawater, as from the UNESCO polynomial or from the more recent derivation based on a Gibbs function.
Maintained by Karline Soetaert. Last updated 1 years ago.
4.0 match 4.63 score 119 scripts 4 dependents
ealdrich
wavelets:Functions for Computing Wavelet Filters, Wavelet Transforms and Multiresolution Analyses
Contains functions for computing and plotting discrete wavelet transforms (DWT) and maximal overlap discrete wavelet transforms (MODWT), as well as their inverses. Additionally, it contains functionality for computing and plotting wavelet transform filters that are used in the above decompositions as well as multiresolution analyses.
Maintained by Eric Aldrich. Last updated 5 years ago.
3.8 match 4 stars 4.90 score 170 scripts 19 dependents
mitra-ep
rOCEAN:Two-Way Feature Set Testing for Multi-Omics
For any two way feature-set from a pair of pre-processed omics data, pairwise-TDP, Column-TDP and row-TDP are calculated. Due to embeded closed testing procedure, the choice of feature-sets can be changed infinite times and even after seeing the data withuot any change in type I error rate. For more details refer to the refrence article.
Maintained by Mitra Ebrahimpoor. Last updated 5 months ago.
5.6 match 3.30 score 2 scripts
homerhanumat
bcscr:Beginning Computer Science with R
Functions and datasets to accompany the text Beginning Computer Science with R (https://homerhanumat.github.io/r-notes).
Maintained by Homer White. Last updated 3 months ago.
7.8 match 2 stars 2.30 score 8 scripts
noaa-nwfsc
zoid:Bayesian Zero-and-One Inflated Dirichlet Regression Modelling
Fits Dirichlet regression and zero-and-one inflated Dirichlet regression with Bayesian methods implemented in Stan. These models are sometimes referred to as trinomial mixture models; covariates and overdispersion can optionally be included.
Maintained by Eric J. Ward. Last updated 11 months ago.
3.0 match 8 stars 5.89 score 12 scripts
pepijn-devries
ggfields:Add Vector Field Layers to Ggplots
Add vector field layers to ggplots. Ideal for visualising wind speeds, water currents, electric/magnetic fields, etc. Accepts data.frames, simple features (sf), and spatiotemporal arrays (stars) objects as input. Vector fields are depicted as arrows starting at specified locations, and with specified angles and radii.
Maintained by Pepijn de Vries. Last updated 8 months ago.
3.4 match 4 stars 5.16 score 12 scripts
jverzani
UsingR:Data Sets, Etc. for the Text "Using R for Introductory Statistics", Second Edition
A collection of data sets to accompany the textbook "Using R for Introductory Statistics," second edition.
Maintained by John Verzani. Last updated 3 years ago.
3.4 match 1 stars 4.97 score 1.4k scripts
pbs-assess
sdmTMB:Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB'
Implements spatial and spatiotemporal GLMMs (Generalized Linear Mixed Effect Models) using 'TMB', 'fmesher', and the SPDE (Stochastic Partial Differential Equation) Gaussian Markov random field approximation to Gaussian random fields. One common application is for spatially explicit species distribution models (SDMs). See Anderson et al. (2024) <doi:10.1101/2022.03.24.485545>.
Maintained by Sean C. Anderson. Last updated 2 days ago.
ecologyglmmspatial-analysisspecies-distribution-modellingtmbcpp
1.5 match 203 stars 10.71 score 848 scripts 1 dependentsaphalo
photobiologyLamps:Spectral Irradiance Data for Lamps
Spectral emission data for some frequently used lamps including bulbs and flashlights based on led emitting diodes (LEDs) but excluding LEDs available as electronic components. Original spectral irradiance data for incandescent-, LED- and discharge lamps are included. They are complemented by data on the effect of temperature on the emission by fluorescent tubes. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Maintained by Pedro J. Aphalo. Last updated 4 months ago.
3.5 match 4.58 score 38 scriptsbioc
LinkHD:LinkHD: a versatile framework to explore and integrate heterogeneous data
Here we present Link-HD, an approach to integrate heterogeneous datasets, as a generalization of STATIS-ACT (โStructuration des Tableaux A Trois Indices de la StatistiqueโAnalyse Conjointe de Tableauxโ), a family of methods to join and compare information from multiple subspaces. However, STATIS-ACT has some drawbacks since it only allows continuous data and it is unable to establish relationships between samples and features. In order to tackle these constraints, we incorporate multiple distance options and a linear regression based Biplot model in order to stablish relationships between observations and variable and perform variable selection.
Maintained by "Laura M Zingaretti". Last updated 5 months ago.
classificationmultiplecomparisonregressionsoftware
4.0 match 4.00 score 2 scripts
sevvandi
stxplore:Exploration of Spatio-Temporal Data
A set of statistical tools for spatio-temporal data exploration. Includes simple plotting functions, covariance calculations and computations similar to principal component analysis for spatio-temporal data. Can use both dataframes and stars objects for all plots and computations. For more details refer 'Spatio-Temporal Statistics with R' (Christopher K. Wikle, Andrew Zammit-Mangion, Noel Cressie, 2019, ISBN:9781138711136).
Maintained by Sevvandi Kandanaarachchi. Last updated 2 years ago.
3.4 match 5 stars 4.70 score 7 scripts
sujit-sahu
bmstdr:Bayesian Modeling of Spatio-Temporal Data with R
Fits, validates and compares a number of Bayesian models for spatial and space time point referenced and areal unit data. Model fitting is done using several packages: 'rstan', 'INLA', 'spBayes', 'spTimer', 'spTDyn', 'CARBayes' and 'CARBayesST'. Model comparison is performed using the DIC and WAIC, and K-fold cross-validation where the user is free to select their own subset of data rows for validation. Sahu (2022) <doi:10.1201/9780429318443> describes the methods in detail.
Maintained by Sujit K. Sahu. Last updated 1 years ago.
bayesianmodellingspatio-temporal-datacpp
3.1 match 15 stars 4.95 score 12 scripts
trackage
trip:Tracking Data
Access and manipulate spatial tracking data, with straightforward coercion from and to other formats. Filter for speed and create time spent maps from tracking data. There are coercion methods to convert between 'trip' and 'ltraj' from 'adehabitatLT', and between 'trip' and 'psp' and 'ppp' from 'spatstat'. Trip objects can be created from raw or grouped data frames, and from types in the 'sp', sf', 'amt', 'trackeR', 'mousetrap', and other packages, Sumner, MD (2011) <https://figshare.utas.edu.au/articles/thesis/The_tag_location_problem/23209538>.
Maintained by Michael D. Sumner. Last updated 8 months ago.
1.9 match 13 stars 7.72 score 137 scripts 1 dependents
bcgov
bcmaps:Map Layers and Spatial Utilities for British Columbia
Various layers of B.C., including administrative boundaries, natural resource management boundaries, census boundaries etc. All layers are available in BC Albers (<https://spatialreference.org/ref/epsg/3005/>) equal-area projection, which is the B.C. government standard. The layers are sourced from the British Columbia and Canadian government under open licenses, including B.C. Data Catalogue (<https://data.gov.bc.ca>), the Government of Canada Open Data Portal (<https://open.canada.ca/en/using-open-data>), and Statistics Canada (<https://www.statcan.gc.ca/en/reference/licence>).
Maintained by Andy Teucher. Last updated 3 months ago.
1.6 match 73 stars 8.65 score 254 scriptscran
mixKernel:Omics Data Integration Using Kernel Methods
Kernel-based methods are powerful methods for integrating heterogeneous types of data. mixKernel aims at providing methods to combine kernel for unsupervised exploratory analysis. Different solutions are provided to compute a meta-kernel, in a consensus way or in a way that best preserves the original topology of the data. mixKernel also integrates kernel PCA to visualize similarities between samples in a non linear space and from the multiple source point of view <doi:10.1093/bioinformatics/btx682>. A method to select (as well as funtions to display) important variables is also provided <doi:10.1093/nargab/lqac014>.
Maintained by Nathalie Vialaneix. Last updated 1 years ago.
5.0 match 2.78 score 9 scripts
abuseki
georefdatar:Geosciences Reference Datasets
Reference datasets commonly used in the geosciences. These include standard atomic weights of the elements, a periodic table, a list of minerals including their abbreviations and chemistry, geochemical data of reservoirs (primitive mantle, continental crust, mantle, basalts, etc.), decay constants and isotopic ratios frequently used in geochronology, color codes of the chronostratigraphic chart. In addition, the package provides functions for basic queries of atomic weights, the list of minerals, and chronostratigraphic chart colors. All datasets are fully referenced, and a BibTeX file containing the references is included.
Maintained by Gerald Schuberth-Hlavaฤ. Last updated 7 months ago.
earth-sciencegeochemical-datageochemistrygeologygeosciencegeosciencesmineralsperiodic-tablereference-data
3.8 match 2 stars 3.60 score 3 scripts
dsalfran
ImputeRobust:Robust Multiple Imputation with Generalized Additive Models for Location Scale and Shape
Provides new imputation methods for the 'mice' package based on generalized additive models for location, scale, and shape (GAMLSS) as described in de Jong, van Buuren and Spiess <doi:10.1080/03610918.2014.911894>.
Maintained by Daniel Salfran. Last updated 6 years ago.
imputationmissing-datamultiple-imputation
3.5 match 9 stars 3.65 score 4 scripts
pifsc-protected-species-division
picMaps:Mapping Utilities for The Pacific Ocean
This package provides objects and functions for making plots and maps easier to create in the Pacific Ocean.
Maintained by Devin S. Johnson. Last updated 13 days ago.
3.7 match 3 stars 3.38 score 4 scripts
australianantarcticdivision
palr:Colour Palettes for Data
Colour palettes for data, based on some well known public data sets. Includes helper functions to map absolute values to known palettes, and capture the work of image colour mapping as raster data sets.
Maintained by Michael D. Sumner. Last updated 8 months ago.
1.9 match 3 stars 6.32 score 56 scripts 4 dependents
courtiol
IsoriX:Isoscape Computation and Inference of Spatial Origins using Mixed Models
Building isoscapes using mixed models and inferring the geographic origin of samples based on their isotopic ratios. This package is essentially a simplified interface to several other packages which implements a new statistical framework based on mixed models. It uses 'spaMM' for fitting and predicting isoscapes, and assigning an organism's origin depending on its isotopic ratio. 'IsoriX' also relies heavily on the package 'rasterVis' for plotting the maps produced with 'terra' using 'lattice'.
Maintained by Alexandre Courtiol. Last updated 6 months ago.
2.0 match 14 stars 5.59 score 56 scripts
palaeoverse
rmacrostrat:Fetch Geologic Data from the 'Macrostrat' Platform
Work with the 'Macrostrat' (<https://macrostrat.org/>) Web Service (v.2, <https://macrostrat.org/api/v2>) to fetch geological data relevant to the spatial and temporal distribution of sedimentary, igneous, and metamorphic rocks as well as data extracted from them.
Maintained by Lewis A. Jones. Last updated 5 months ago.
1.8 match 6.06 score 17 scripts
haydarde
dLagM:Time Series Regression Models with Distributed Lag Models
Provides time series regression models with one predictor using finite distributed lag models, polynomial (Almon) distributed lag models, geometric distributed lag models with Koyck transformation, and autoregressive distributed lag models. It also consists of functions for computation of h-step ahead forecasts from these models. See Demirhan (2020)(<doi:10.1371/journal.pone.0228812>) and Baltagi (2011)(<doi:10.1007/978-3-642-20059-5>) for more information.
Maintained by Haydar Demirhan. Last updated 1 years ago.
3.2 match 2 stars 3.18 score 127 scripts
tim-salabim
remote:Empirical Orthogonal Teleconnections in R
Empirical orthogonal teleconnections in R. 'remote' is short for 'R(-based) EMpirical Orthogonal TEleconnections'. It implements a collection of functions to facilitate empirical orthogonal teleconnection analysis. Empirical Orthogonal Teleconnections (EOTs) denote a regression based approach to decompose spatio-temporal fields into a set of independent orthogonal patterns. They are quite similar to Empirical Orthogonal Functions (EOFs) with EOTs producing less abstract results. In contrast to EOFs, which are orthogonal in both space and time, EOT analysis produces patterns that are orthogonal in either space or time.
Maintained by Tim Appelhans. Last updated 8 years ago.
3.6 match 2.79 score 100 scripts
stscl
geocn:Loads Spatial Data Sets of China
Providing various commonly used spatial data related to Chinese regions in the R programming environment.
Maintained by Wenbo Lv. Last updated 3 months ago.
chinachina-regiongeospatial-visualizationmaps
2.0 match 17 stars 4.93 score 10 scripts
dannycbowman
hht:The Hilbert-Huang Transform: Tools and Methods
Builds on the EMD package to provide additional tools for empirical mode decomposition (EMD) and Hilbert spectral analysis. It also implements the ensemble empirical decomposition (EEMD) and the complete ensemble empirical mode decomposition (CEEMD) methods to avoid mode mixing and intermittency problems found in EMD analysis. The package comes with several plotting methods that can be used to view intrinsic mode functions, the HHT spectrum, and the Fourier spectrum.
Maintained by Daniel C. Bowman. Last updated 2 years ago.
3.6 match 2 stars 2.60 score 33 scripts 2 dependentsaphalo
photobiologyLEDs:Spectral Data for Light-Emitting-Diodes
Spectral emission data for some frequently used light emitting diodes available as electronic components. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Maintained by Pedro J. Aphalo. Last updated 4 months ago.
1.7 match 2 stars 5.13 score 34 scripts
ptitle
rangeBuilder:Occurrence Filtering, Geographic Standardization and Generation of Species Range Polygons
Provides tools for filtering occurrence records, generating alpha-hull-derived range polygons and mapping species distributions.
Maintained by Pascal Title. Last updated 5 months ago.
1.8 match 9 stars 4.99 score 72 scripts 1 dependents
europeanifcbgroup
iRfcb:Tools for Managing Imaging FlowCytobot (IFCB) Data
A comprehensive suite of tools for managing, processing, and analyzing data from the IFCB. I R FlowCytobot ('iRfcb') supports quality control, geospatial analysis, and preparation of IFCB data for publication in databases like <https://www.gbif.org>, <https://www.obis.org>, <https://emodnet.ec.europa.eu/en>, <https://shark.smhi.se/>, and <https://www.ecotaxa.org>. The package integrates with the MATLAB 'ifcb-analysis' tool, which is described in Sosik and Olson (2007) <doi:10.4319/lom.2007.5.204>, and provides features for working with raw, manually classified, and machine learningโclassified image datasets. Key functionalities include image extraction, particle size distribution analysis, taxonomic data handling, and biomass concentration calculations, essential for plankton research.
Maintained by Anders Torstensson. Last updated 13 hours ago.
1.5 match 1 stars 5.72 score
atsa-es
atsalibrary:Packages, data and scripts for ATSA course and lab book
This package will load the needed packages and data files for the ATSA course material when students install from GitHub.
Maintained by Elizabeth E. Holmes. Last updated 2 years ago.
3.5 match 4 stars 2.41 score 13 scriptscran
languageR:Analyzing Linguistic Data: A Practical Introduction to Statistics
Data sets exemplifying statistical methods, and some facilitatory utility functions used in ``Analyzing Linguistic Data: A practical introduction to statistics using R'', Cambridge University Press, 2008.
Maintained by R. H. Baayen. Last updated 6 years ago.
3.6 match 2.32 score
eccele
ClimClass:Climate Classification According to Several Indices
Classification of climate according to Koeppen - Geiger, of aridity indices, of continentality indices, of water balance after Thornthwaite, of viticultural bioclimatic indices. Drawing climographs: Thornthwaite, Peguy, Bagnouls-Gaussen.
Maintained by Emanuele Eccel. Last updated 9 years ago.
4.0 match 2.06 score 23 scripts
hong-kong-districts-info
hkdatasets:Datasets Related to Hong Kong
Datasets related to Hong Kong, including information on the 2019 elected District Councillors (<https://www.districtcouncils.gov.hk> and <https://dce2019.hk01.com/>) and traffic collision data from the Hong Kong Department of Transport (<https://www.td.gov.hk/>). All of the data in this package is available in the public domain.
Maintained by Martin Chan. Last updated 4 years ago.
1.6 match 18 stars 4.69 score 27 scripts
mhpob
matos:Interface with the Mid-Atlantic Acoustic Telemetry Observing System (MATOS)
This package provides HTML-scaping functions to interact with the MATOS website (https://matos.asascience.com/), allowing aggregation of data and the downloading and posting of files.
Maintained by Michael OBrien. Last updated 3 months ago.
animal-trackingapiapi-wrapperbiotelemetryfishfisheriesfisheries-research
1.7 match 3 stars 4.35 score 9 scriptskarlines
OceanView:Visualisation of Oceanographic Data and Model Output
Functions for transforming and viewing 2-D and 3-D (oceanographic) data and model output.
Maintained by Karline Soetaert. Last updated 1 years ago.
1.7 match 4.08 score 60 scripts
ericpante
marmap:Import, Plot and Analyze Bathymetric and Topographic Data
Import xyz data from the NOAA (National Oceanic and Atmospheric Administration, <https://www.noaa.gov>), GEBCO (General Bathymetric Chart of the Oceans, <https://www.gebco.net>) and other sources, plot xyz data to prepare publication-ready figures, analyze xyz data to extract transects, get depth / altitude based on geographical coordinates, or calculate z-constrained least-cost paths.
Maintained by Benoit Simon-Bouhet. Last updated 8 months ago.
0.8 match 32 stars 8.86 score 524 scripts 1 dependentscran
s2dv:A Set of Common Tools for Seasonal to Decadal Verification
The advanced version of package 's2dverification'. It is intended for 'seasonal to decadal' (s2d) climate forecast verification, but it can also be used in other kinds of forecasts or general climate analysis. This package is specially designed for the comparison between the experimental and observational datasets. The functionality of the included functions covers from data retrieval, data post-processing, skill scores against observation, to visualization. Compared to 's2dverification', 's2dv' is more compatible with the package 'startR', able to use multiple cores for computation and handle multi-dimensional arrays with a higher flexibility. The CDO version used in development is 1.9.8.
Maintained by Ariadna Batalla. Last updated 5 months ago.
3.5 match 1.95 score 3 dependents
teos-10
gsw:Gibbs Sea Water Functions
Provides an interface to the Gibbs 'SeaWater' ('TEOS-10') C library, version 3.06-16-0 (commit '657216dd4f5ea079b5f0e021a4163e2d26893371', dated 2022-10-11, available at <https://github.com/TEOS-10/GSW-C>, which stems from 'Matlab' and other code written by members of Working Group 127 of 'SCOR'/'IAPSO' (Scientific Committee on Oceanic Research / International Association for the Physical Sciences of the Oceans).
Maintained by Dan Kelley. Last updated 8 days ago.
gibbsoceanographyseawaterteos-10
0.8 match 8 stars 8.53 score 286 scripts 19 dependents
bigelowlab
thredds:Crawler for Navigating THREDDS Catalogs
Provides a crawler for programmatically navigating THREDDS Data Server (<https://www.unidata.ucar.edu/software/tds/>) catalogs, and access dataset metadata and resources.
Maintained by Emmanuel Blondel. Last updated 17 days ago.
1.6 match 6 stars 4.00 score 33 scriptscran
mAr:Multivariate AutoRegressive Analysis
R functions for the estimation and eigen-decomposition of multivariate autoregressive models.
Maintained by S. M. Barbosa. Last updated 3 years ago.
3.5 match 1 stars 1.78 score 2 dependents
jmcurran
jaggR:Supporting Files and Functions for the Book Bayesian Modelling with 'JAGS'
All the data and functions used to produce the book. We do not expect most people to use the package for any other reason than to get simple access to the 'JAGS' model files, the data, and perhaps run some of the simple examples. The authors of the book are David Lucy (now sadly deceased) and James Curran. It is anticipated that a manuscript will be provided to Taylor and Francis around Augus 2020, with bibliographic details to follow at that point. Until such time, further information can be obtained by emailing James Curran.
Maintained by James Curran. Last updated 1 years ago.
3.1 match 2.00 score 1 scriptsscar
solong:Allometric Equations for Southern Ocean Taxa
Provides allometric equations that relate the body size of Southern Ocean taxa to body part measurements.
Maintained by Ben Raymond. Last updated 3 years ago.
3.5 match 1.70 score 8 scriptsropensci
CoordinateCleaner:Automated Cleaning of Occurrence Records from Biological Collections
Automated flagging of common spatial and temporal errors in biological and paleontological collection data, for the use in conservation, ecology and paleontology. Includes automated tests to easily flag (and exclude) records assigned to country or province centroid, the open ocean, the headquarters of the Global Biodiversity Information Facility, urban areas or the location of biodiversity institutions (museums, zoos, botanical gardens, universities). Furthermore identifies per species outlier coordinates, zero coordinates, identical latitude/longitude and invalid coordinates. Also implements an algorithm to identify data sets with a significant proportion of rounded coordinates. Especially suited for large data sets. The reference for the methodology is: Zizka et al. (2019) <doi:10.1111/2041-210X.13152>.
Maintained by Alexander Zizka. Last updated 1 years ago.
0.5 match 82 stars 10.93 score 306 scripts 3 dependentscran
BAT:Biodiversity Assessment Tools
Includes algorithms to assess alpha and beta diversity in all their dimensions (taxonomic, phylogenetic and functional). It allows performing a number of analyses based on species identities/abundances, phylogenetic/functional distances, trees, convex-hulls or kernel density n-dimensional hypervolumes depicting species relationships. Cardoso et al. (2015) <doi:10.1111/2041-210X.12310>.
Maintained by Pedro Cardoso. Last updated 1 years ago.
1.7 match 3.17 score 3 dependentsropensci
spocc:Interface to Species Occurrence Data Sources
A programmatic interface to many species occurrence data sources, including Global Biodiversity Information Facility ('GBIF'), 'iNaturalist', 'eBird', Integrated Digitized 'Biocollections' ('iDigBio'), 'VertNet', Ocean 'Biogeographic' Information System ('OBIS'), and Atlas of Living Australia ('ALA'). Includes functionality for retrieving species occurrence data, and combining those data.
Maintained by Hannah Owens. Last updated 1 months ago.
specimensapiweb-servicesoccurrencesspeciestaxonomygbifinatvertnetebirdidigbioobisalaantwebbisondataecoengineinaturalistoccurrencespecies-occurrencespocc
0.5 match 118 stars 10.09 score 552 scripts 5 dependents
david6marsh
himach:Find Routes for Supersonic Aircraft
For supersonic aircraft, flying subsonic over land, find the best route between airports. Allow for coastal buffer and potentially closed regions. Use a minimal model of aircraft performance: the focus is on time saved versus subsonic flight, rather than on vertical flight profile. For modelling and forecasting, not for planning your flight!
Maintained by David Marsh. Last updated 1 years ago.
1.2 match 1 stars 4.00 score 7 scripts
kjhealy
gssrdoc:Document General Social Survey Variable
The General Social Survey (GSS) is a long-running, mostly annual survey of US households. It is administered by the National Opinion Research Center (NORC). This package contains the a tibble with information on the survey variables, together with every variable documented as an R help page. For more information on the GSS see \url{http://gss.norc.org}.
Maintained by Kieran Healy. Last updated 11 months ago.
2.0 match 2.28 score 38 scripts
paulhendricks
titanic:Titanic Passenger Survival Data Set
This data set provides information on the fate of passengers on the fatal maiden voyage of the ocean liner "Titanic", with variables such as economic status (class), sex, age, and survival. Whereas the base R Titanic data found by calling data("Titanic") is an array resulting from cross-tabulating 2201 observations, these data sets are individual non-aggregated observations and formatted in a machine learning context with a training sample, a testing sample, and two additional data sets that can be used for deeper machine learning analysis. These data sets are used in a very well known Kaggle competition; formatting the raw data sets in a package hopefully lowers the barrier to entry for users new to R and machine learning.
Maintained by Paul Hendricks. Last updated 8 years ago.
0.5 match 10 stars 8.95 score 804 scripts 2 dependents
jpgattuso
seacarb:Seawater Carbonate Chemistry
Calculates parameters of the seawater carbonate system and assists the design of ocean acidification perturbation experiments.
Maintained by Jean-Pierre Gattuso. Last updated 1 years ago.
0.5 match 8 stars 8.27 score 350 scripts 5 dependentscran
TrendSLR:Estimating Trend, Velocity and Acceleration from Sea Level Records
Analysis of annual average ocean water level time series, providing improved estimates of trend (mean sea level) and associated real-time velocities and accelerations. Improved trend estimates are based on singular spectrum analysis methods. Various gap-filling options are included to accommodate incomplete time series records. The package also includes a range of diagnostic tools to inspect the components comprising the original time series which enables expert interpretation and selection of likely trend components. A wide range of screen and plot to file options are available in the package.
Maintained by Phil J Watson. Last updated 6 years ago.
4.0 match 1.00 scorecran
msltrend:Improved Techniques to Estimate Trend, Velocity and Acceleration from Sea Level Records
Analysis of annual average ocean water level time series from long (minimum length 80 years) individual records, providing improved estimates of trend (mean sea level) and associated real-time velocities and accelerations. Improved trend estimates are based on Singular Spectrum Analysis methods. Various gap-filling options are included to accommodate incomplete time series records. The package also contains a forecasting module to consider the implication of user defined quantum of sea level rise between the end of the available historical record and the year 2100. A wide range of screen and pdf plotting options are available in the package.
Maintained by Phil J Watson. Last updated 9 years ago.
4.0 match 1.00 score 8 scripts
bczernecki
climate:Interface to Download Meteorological (and Hydrological) Datasets
Automatize downloading of meteorological and hydrological data from publicly available repositories: OGIMET (<http://ogimet.com/index.phtml.en>), University of Wyoming - atmospheric vertical profiling data (<http://weather.uwyo.edu/upperair/>), Polish Institute of Meteorology and Water Management - National Research Institute (<https://danepubliczne.imgw.pl>), and National Oceanic & Atmospheric Administration (NOAA). This package also allows for searching geographical coordinates for each observation and calculate distances to the nearest stations.
Maintained by Bartosz Czernecki. Last updated 10 days ago.
climateclimate-dataimgwmeteorological-datameteorologynoaa-dataogimetsounding
0.5 match 88 stars 7.61 score 38 scripts
openair-project
worldmet:Import Surface Meteorological Data from NOAA Integrated Surface Database (ISD)
Functions to import data from more than 30,000 surface meteorological sites around the world managed by the National Oceanic and Atmospheric Administration (NOAA) Integrated Surface Database (ISD, see <https://www.ncei.noaa.gov/products/land-based-station/integrated-surface-database>).
Maintained by David Carslaw. Last updated 2 months ago.
0.5 match 55 stars 7.06 score 77 scripts
gaborcsardi
rcorpora:A Collection of Small Text Corpora of Interesting Data
A collection of small text corpora of interesting data. It contains all data sets from 'dariusk/corpora'. Some examples: names of animals: birds, dinosaurs, dogs; foods: beer categories, pizza toppings; geography: English towns, rivers, oceans; humans: authors, US presidents, occupations; science: elements, planets; words: adjectives, verbs, proverbs, US president quotes.
Maintained by Gรกbor Csรกrdi. Last updated 7 years ago.
0.5 match 42 stars 6.83 score 36 scripts 2 dependents
adokter
suntools:Calculate Sun Position, Sunrise, Sunset, Solar Noon and Twilight
Provides a set of convenient functions for calculating sun-related information, including the sun's position (elevation and azimuth), and the times of sunrise, sunset, solar noon, and twilight for any given geographical location on Earth. These calculations are based on equations provided by the National Oceanic & Atmospheric Administration (NOAA) <https://gml.noaa.gov/grad/solcalc/calcdetails.html> as described in "Astronomical Algorithms" by Jean Meeus (1991, ISBN: 978-0-943396-35-4).
Maintained by Adriaan M. Dokter. Last updated 4 months ago.
0.5 match 11 stars 6.84 score 30 scripts 22 dependentscran
onc.api:Oceans 2.0 API Client Library
Allows users to discover and retrieve Ocean Networks Canada's oceanographic data in raw, text, image, audio, video or any other format available. Provides a class that wraps web service calls and business logic so that users can download data with a single line of code.
Maintained by Bennit Mueller. Last updated 4 years ago.
3.4 match 1.00 score
pik-piam
mrwaste:Analysis and Projection of Municipal Solid Waste
Reads in waste data from What a Waste 2.0 and uses brms package to create future regressions based on GDP.
Maintained by David Meng-Chuen Chen. Last updated 9 months ago.
1.7 match 2.00 score
niklashohmann
DAIME:Effects of Changing Deposition Rates
Reverse and model the effects of changing deposition rates on geological data and rates. Based on Hohmann (2018) <doi:10.13140/RG.2.2.23372.51841> .
Maintained by Niklas Hohmann. Last updated 5 years ago.
1.1 match 3.00 score
ericarcher
swfscMisc:Miscellaneous Functions for Southwest Fisheries Science Center
Collection of conversion, analytical, geodesic, mapping, and plotting functions. Used to support packages and code written by researchers at the Southwest Fisheries Science Center of the National Oceanic and Atmospheric Administration.
Maintained by Eric Archer. Last updated 11 months ago.
0.5 match 2 stars 6.18 score 101 scripts 20 dependentspepijn-devries
CopernicusMarine:Search Download and Handle Data from Copernicus Marine Service Information
Subset and download data from EU Copernicus Marine Service Information: <https://data.marine.copernicus.eu>. Import data on the oceans physical and biogeochemical state from Copernicus into R without the need of external software.
Maintained by Pepijn de Vries. Last updated 3 months ago.
0.5 match 25 stars 5.88 score 20 scripts 2 dependents
geanders
noaastormevents:Explore NOAA Storm Events Database
Allows users to explore and plot data from the National Oceanic and Atmospheric Administration (NOAA) Storm Events database through R for United States counties. Functionality includes matching storm event listings by time and location to hurricane best tracks data. This work was supported by grants from the Colorado Water Center, the National Institute of Environmental Health Sciences (R00ES022631) and the National Science Foundation (1331399).
Maintained by Brooke Anderson. Last updated 4 years ago.
0.5 match 16 stars 5.41 score 16 scripts
troyhill
VulnToolkit:Analysis of Tidal Datasets
Contains functions for analysis and summary of tidal datasets. Also provides access to tidal data collected by the National Oceanic and Atmospheric Administration's Center for Operational Oceanographic Products and Services and the Permanent Service for Mean Sea Level. For detailed description and application examples, see Hill, T.D. and S.C. Anisfeld (2021) <doi:10.6084/m9.figshare.14161202.v1> and Hill, T.D. and S.C. Anisfeld (2015) <doi:10.1016/j.ecss.2015.06.004>.
Maintained by Troy Hill. Last updated 4 years ago.
0.5 match 8 stars 5.18 score 19 scriptsropensci
rrricanes:Web Scraper for Atlantic and East Pacific Hurricanes and Tropical Storms
Get archived data of past and current hurricanes and tropical storms for the Atlantic and eastern Pacific oceans. Data is available for storms since 1998. Datasets are updated via the rrricanesdata package. Currently, this package is about 6MB of datasets. See the README or view `vignette("drat")` for more information.
Maintained by Elin Waring. Last updated 1 years ago.
0.5 match 21 stars 4.66 score 55 scripts
inbo
movepub:Prepare Movebank Data for Publication
Prepare animal tracking data from 'Movebank' (<https://movebank.org>) for publication in a research repository. With 'movepub' you can document data with metadata following the Data Package standard and transform these to Darwin Core and Ecological Metadata Language ('EML') for publication to the Global Biodiversity Information Facility ('GBIF') and the Ocean Biodiversity Information System ('OBIS').
Maintained by Peter Desmet. Last updated 4 days ago.
0.5 match 3 stars 4.65 score 5 scripts
rkbauer
oceanmap:A Plotting Toolbox for 2D Oceanographic Data
Plotting toolbox for 2D oceanographic data (satellite data, sea surface temperature, chlorophyll, ocean fronts & bathymetry). Recognized classes and formats include netcdf, Raster, '.nc' and '.gz' files.
Maintained by Robert K. Bauer. Last updated 1 years ago.
bathymetrychlaggplotmapping-toolsncdfoceanographic-dataremote-sensingsatellite-imspatial-datasst
0.5 match 4 stars 4.54 score 58 scripts 1 dependentsropensci
camsRad:Client for CAMS Radiation Service
Copernicus Atmosphere Monitoring Service (CAMS) Radiation Service provides time series of global, direct, and diffuse irradiations on horizontal surface, and direct irradiation on normal plane for the actual weather conditions as well as for clear-sky conditions. The geographical coverage is the field-of-view of the Meteosat satellite, roughly speaking Europe, Africa, Atlantic Ocean, Middle East. The time coverage of data is from 2004-02-01 up to 2 days ago. Data are available with a time step ranging from 15 min to 1 month. For license terms and to create an account, please see <http://www.soda-pro.com/web-services/radiation/cams-radiation-service>.
Maintained by Lukas Lundstrom. Last updated 5 years ago.
0.5 match 9 stars 4.65 score 10 scripts
hypertidy
whatarelief:Get topography elevation and online imagery data
Obtain elevation data, topography relief for any region on the Earth. Topography and bathymetry data is supported by default. Sensible defaults exist for usage, with a matrix of entire planet topography(and bathymetry) returned. The geographic extent can be modified (from whole-planet) to a simple region in longitude/latitude by 'xmin,xmax,ymin,ymax' range, or by specifying a grid exactly with extent, dimension, projection in generic or spatial formats ('terra' or 'raster'). Online sources for data are used, 'GEBCO' General Bathymetric Chart of the Oceans (GEBCO) as a background (to ~500m resolution), and Copernicus GLO-30 Digital Elevation Model for higher resolution (to ~30m resolution). Custom source/s of topography may be input to override defaults, links to file/s or URLs as required.
Maintained by Michael D. Sumner. Last updated 1 years ago.
0.5 match 50 stars 4.51 score 13 scriptsaphalo
rOmniDriver:Omni Driver R wrapper
This package is a wrapper of the OmniDriver java driver for Ocean Optics spectrometers.
Maintained by Pedro J. Aphalo. Last updated 7 months ago.
data-acquisitionspectroscopyopenjdk
0.6 match 1 stars 3.00 score 6 scripts
pnickchi
LobsterCatch:Models the Capture Processes in American Lobster Trap Fishery
Simulate lobster catch process in a trap fishery. Factors such as lobster density on ocean floor, their movement, trap saturation and bait shrinkage rate can be modeled. Details of the methods for modeling those processes can be found in: Addison and Bell (1997) <doi:10.1071/MF97169>.
Maintained by Nickchi Payman. Last updated 2 years ago.
0.5 match 3.18 score
r-forge
rNOMADS:An interface to the NOAA Operational Model Archive and Distribution System
An interface to the National Oceanic and Atmospheric Administration's Operational Model Archive and Distribution System (NOMADS) that allows R users to quickly and efficiently download global and regional weather model data for processing. rNOMADS currently supports a variety of models ranging from global weather data to an altitude of 40 km, to high resolution regional weather models, to wave and sea ice models. It can also retrieve archived NOMADS models. rNOMADS can retrieve binary data in GRIB format as well as import ascii data directly into R by interfacing with the GrADS-DODS system.
Maintained by Daniel C. Bowman. Last updated 2 years ago.
0.5 match 3.11 score 65 scriptsmhpob
simfish:simulate fish tracks & acoustic detections
facilitates simulation of fish tracks in featureless and semi-realistic environments (coastal oceans, fjords, and lakes). A user-defined raster defining the water body - land boundaries is used to constrain simulated tracks. Fish movements are simulated (currently) as either a correlated random walk or a biased & correlated random walk, with the bias toward a defined Centre-of-Attraction. A potential function is used to ensure the tracks avoid land. The package can also be used to simulate detections of acoustically-tagged fish by acoustic receivers at user-defined locations.
Maintained by Ian Jonsen. Last updated 1 years ago.
0.5 match 2.70 score 3 scripts
tshestakova
smosr:Acquire and Explore BEC-SMOS L4 Soil Moisture Data in R
Provides functions that automate accessing, downloading and exploring Soil Moisture and Ocean Salinity (SMOS) Level 4 (L4) data developed by Barcelona Expert Center (BEC). Particularly, it includes functions to search for, acquire, extract, and plot BEC-SMOS L4 soil moisture data downscaled to ~1 km spatial resolution. Note that SMOS is one of Earth Explorer Opportunity missions by the European Space Agency (ESA). More information about SMOS products can be found at <https://earth.esa.int/eogateway/missions/smos/data>.
Maintained by Tatiana A. Shestakova. Last updated 2 years ago.
0.5 match 2.70 score 1 scriptshypertidy
L3bin:Integerized Sinusoidal Binning Scheme for Level 3 Data
The NASA Ocean Biology processing Group L3 bin scheme, based on the sinusoidal map projection. Psuedo code for the binning scheme was published in Appendix A of NASA Technical Memorandum 104566, Vol. 32., listed in URL.
Maintained by Michael D. Sumner. Last updated 3 months ago.
0.5 match 4 stars 2.60 score 2 scripts
alrobles
mddmaps:Download World Mammal Maps
Lightweight maps of mammals of the world. These maps are a comprehensive collection of maps aligned with the Mammal Diversity Database taxonomy of the American Society of Mammalogists. They are generated at low resolution for easy access, consultation and manipulation in shapefile format. The package connects to a binary backup hosted in the Digital Ocean cloud service and allows individual or batch download of any mammal species in the mdd taxonomy by providing the scientific species name.
Maintained by Angel Robles. Last updated 10 months ago.
0.5 match 1 stars 1.70 score