R-universe search: material

dmurdoch

rgl:3D Visualization Using OpenGL

Provides medium to high level functions for 3D interactive graphics, including functions modelled on base graphics (plot3d(), etc.) as well as functions for constructing representations of geometric objects (cube3d(), etc.). Output may be on screen using OpenGL, or to various standard 3D file formats including WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.

Maintained by Duncan Murdoch. Last updated 4 days ago.

graphics opengl rgl webgl libglu libglvnd libpng libx11 freetype cpp

14.1 match 91 stars 17.40 score 7.3k scripts 303 dependents

tylermorganwall

rayrender:Build and Raytrace 3D Scenes

Render scenes using pathtracing. Build 3D scenes out of spheres, cubes, planes, disks, triangles, cones, curves, line segments, cylinders, ellipsoids, and 3D models in the 'Wavefront' OBJ file format or the PLY Polygon File Format. Supports several material types, textures, multicore rendering, and tone-mapping. Based on the "Ray Tracing in One Weekend" book series. Peter Shirley (2018) <https://raytracing.github.io>.

Maintained by Tyler Morgan-Wall. Last updated 5 days ago.

libx11 cpp

20.0 match 631 stars 10.87 score 188 scripts 8 dependents

aphalo

photobiologyFilters:Spectral Transmittance and Spectral Reflectance Data

Spectral 'transmittance' data for frequently used filters and similar materials. Plastic sheets and films; photography filters; theatrical gels; machine-vision filters; various types of window glass; optical glass and some laboratory plastics and glassware. Spectral reflectance data for frequently encountered materials. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.

Maintained by Pedro J. Aphalo. Last updated 2 days ago.

31.5 match 5.20 score 40 scripts

juba

rmdformats:HTML Output Formats and Templates for 'rmarkdown' Documents

HTML formats and templates for 'rmarkdown' documents, with some extra features such as automatic table of contents, lightboxed figures, dynamic crosstab helper.

Maintained by Julien Barnier. Last updated 1 years ago.

docco html html-theme material rmarkdown rstudio

14.8 match 723 stars 10.22 score 1.4k scripts 5 dependents

cmstatr

cmstatr:Statistical Methods for Composite Material Data

An implementation of the statistical methods commonly used for advanced composite materials in aerospace applications. This package focuses on calculating basis values (lower tolerance bounds) for material strength properties, as well as performing the associated diagnostic tests. This package provides functions for calculating basis values assuming several different distributions, as well as providing functions for non-parametric methods of computing basis values. Functions are also provided for testing the hypothesis that there is no difference between strength and modulus data from an alternate sample and that from a "qualification" or "baseline" sample. For a discussion of these statistical methods and their use, see the Composite Materials Handbook, Volume 1 (2012, ISBN: 978-0-7680-7811-4). Additional details about this package are available in the paper by Kloppenborg (2020, <doi:10.21105/joss.02265>).

Maintained by Stefan Kloppenborg. Last updated 13 days ago.

composite-material-data data materials-science statistical-analysis statistics

21.2 match 4 stars 6.36 score 23 scripts

nanxstats

ggsci:Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'

A collection of 'ggplot2' color palettes inspired by plots in scientific journals, data visualization libraries, science fiction movies, and TV shows.

Maintained by Nan Xiao. Last updated 10 months ago.

color-palettes data-visualization ggplot2 ggsci sci-fi scientific-journals visualization

7.1 match 680 stars 18.00 score 26k scripts 438 dependents

ericrayanderson

shinymaterial:Implement Material Design in Shiny Applications

Allows shiny developers to incorporate UI elements based on Google's Material design. See <https://material.io/guidelines/> for more information.

Maintained by Eric Anderson. Last updated 4 years ago.

12.6 match 236 stars 7.80 score 177 scripts 2 dependents

insightsengineering

rtables:Reporting Tables

Reporting tables often have structure that goes beyond simple rectangular data. The 'rtables' package provides a framework for declaring complex multi-level tabulations and then applying them to data. This framework models both tabulation and the resulting tables as hierarchical, tree-like objects which support sibling sub-tables, arbitrary splitting or grouping of data in row and column dimensions, cells containing multiple values, and the concept of contextual summary computations. A convenient pipe-able interface is provided for declaring table layouts and the corresponding computations, and then applying them to data.

Maintained by Joe Zhu. Last updated 3 months ago.

pharmaceuticals tables

6.3 match 232 stars 13.65 score 238 scripts 17 dependents

easystats

see:Model Visualisation Toolbox for 'easystats' and 'ggplot2'

Provides plotting utilities supporting packages in the 'easystats' ecosystem (<https://github.com/easystats/easystats>) and some extra themes, geoms, and scales for 'ggplot2'. Color scales are based on <https://materialui.co/>. References: Lüdecke et al. (2021) <doi:10.21105/joss.03393>.

Maintained by Indrajeet Patil. Last updated 21 days ago.

data-visualization easystats ggplot2 hacktoberfest plotting see statistics visualisation visualization

5.5 match 902 stars 13.22 score 2.0k scripts 3 dependents

julianfaraway

faraway:Datasets and Functions for Books by Julian Faraway

Books are "Linear Models with R" published 1st Ed. August 2004, 2nd Ed. July 2014, 3rd Ed. February 2025 by CRC press, ISBN 9781439887332, and "Extending the Linear Model with R" published by CRC press in 1st Ed. December 2005 and 2nd Ed. March 2016, ISBN 9781584884248 and "Practical Regression and ANOVA in R" contributed documentation on CRAN (now very dated).

Maintained by Julian Faraway. Last updated 2 months ago.

data

7.5 match 29 stars 9.43 score 1.7k scripts 1 dependents

learnitr

learnitdown:R Markdown, Bookdown and Learnr Additions for Learning Material

Extension to R Markdown, Bookdown and Learnr for building better learning and e-learning material: H5P integration, course-contextual divs, differed loading of Shiny and learnr applications, and much more ...

Maintained by Philippe Grosjean. Last updated 7 months ago.

bookdown learning-resources r-markdown teaching-materials

14.9 match 13 stars 4.49 score 16 scripts

winvector

rquery:Relational Query Generator for Data Manipulation at Scale

A piped query generator based on Edgar F. Codd's relational algebra, and on production experience using 'SQL' and 'dplyr' at big data scale. The design represents an attempt to make 'SQL' more teachable by denoting composition by a sequential pipeline notation instead of nested queries or functions. The implementation delivers reliable high performance data processing on large data systems such as 'Spark', databases, and 'data.table'. Package features include: data processing trees or pipelines as observable objects (able to report both columns produced and columns used), optimized 'SQL' generation as an explicit user visible table modeling step, plus explicit query reasoning and checking.

Maintained by John Mount. Last updated 2 years ago.

7.0 match 110 stars 9.53 score 126 scripts 3 dependents

traversc

stringfish:Alt String Implementation

Provides an extendable, performant and multithreaded 'alt-string' implementation backed by 'C++' vectors and strings.

Maintained by Travers Ching. Last updated 5 months ago.

pcre2 cpp

6.0 match 67 stars 10.14 score 14 scripts 57 dependents

tylermorganwall

rayvertex:3D Software Rasterizer

Rasterize images using a 3D software renderer. 3D scenes are created either by importing external files, building scenes out of the included objects, or by constructing meshes manually. Supports point and directional lights, anti-aliased lines, shadow mapping, transparent objects, translucent objects, multiple materials types, reflection, refraction, environment maps, multicore rendering, bloom, tone-mapping, and screen-space ambient occlusion.

Maintained by Tyler Morgan-Wall. Last updated 2 months ago.

cpp

7.3 match 68 stars 8.23 score 25 scripts 11 dependents

tidyverse

duckplyr:A 'DuckDB'-Backed Version of 'dplyr'

A drop-in replacement for 'dplyr', powered by 'DuckDB' for performance. Offers convenient utilities for working with in-memory and larger-than-memory data while retaining full 'dplyr' compatibility.

Maintained by Kirill Müller. Last updated 5 days ago.

analytics dataframe dplyr duckdb performance

5.0 match 313 stars 11.22 score 220 scripts

aphalo

photobiology:Photobiological Calculations

Definitions of classes, methods, operators and functions for use in photobiology and radiation meteorology and climatology. Calculation of effective (weighted) and not-weighted irradiances/doses, fluence rates, transmittance, reflectance, absorptance, absorbance and diverse ratios and other derived quantities from spectral data. Local maxima and minima: peaks, valleys and spikes. Conversion between energy-and photon-based units. Wavelength interpolation. Astronomical calculations related solar angles and day length. Colours and vision. This package is part of the 'r4photobiology' suite, Aphalo, P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.

Maintained by Pedro J. Aphalo. Last updated 2 days ago.

light photobiology quantification r4photobiology-suite radiation spectra sun-position

5.4 match 4 stars 9.20 score 604 scripts 12 dependents

natverse

nat:NeuroAnatomy Toolbox for Analysis of 3D Image Data

NeuroAnatomy Toolbox (nat) enables analysis and visualisation of 3D biological image data, especially traced neurons. Reads and writes 3D images in NRRD and 'Amira' AmiraMesh formats and reads surfaces in 'Amira' hxsurf format. Traced neurons can be imported from and written to SWC and 'Amira' LineSet and SkeletonGraph formats. These data can then be visualised in 3D via 'rgl', manipulated including applying calculated registrations, e.g. using the 'CMTK' registration suite, and analysed. There is also a simple representation for neurons that have been subjected to 3D skeletonisation but not formally traced; this allows morphological comparison between neurons including searches and clustering (via the 'nat.nblast' extension package).

Maintained by Gregory Jefferis. Last updated 6 months ago.

3d connectomics image-analysis neuroanatomy neuroanatomy-toolbox neuron neuron-morphology neuroscience visualisation

4.9 match 67 stars 9.94 score 436 scripts 2 dependents

cran

metRology:Support for Metrological Applications

Provides classes and calculation and plotting functions for metrology applications, including measurement uncertainty estimation and inter-laboratory metrology comparison studies.

Maintained by Stephen L R Ellison. Last updated 2 months ago.

13.5 match 5 stars 3.41 score 7 dependents

cynkra

dm:Relational Data Models

Provides tools for working with multiple related tables, stored as data frames or in a relational database. Multiple tables (data and metadata) are stored in a compound object, which can then be manipulated with a pipe-friendly syntax.

Maintained by Kirill Müller. Last updated 3 months ago.

data-model data-warehousing datawarehousing dbi dbplyr relational-databases

3.0 match 511 stars 14.81 score 410 scripts 8 dependents

glenndavis52

colorSpec:Color Calculations with Emphasis on Spectral Data

Calculate with spectral properties of light sources, materials, cameras, eyes, and scanners. Build complex systems from simpler parts using a spectral product algebra. For light sources, compute CCT, CRI, SSI, and IES TM-30 reports. For object colors, compute optimal colors and Logvinenko coordinates. Work with the standard CIE illuminants and color matching functions, and read spectra from text files, including CGATS files. Estimate a spectrum from its response. A user guide and 9 vignettes are included.

Maintained by Glenn Davis. Last updated 2 months ago.

6.8 match 2 stars 6.34 score 73 scripts 5 dependents

spatstat

spatstat.data:Datasets for 'spatstat' Family

Contains all the datasets for the 'spatstat' family of packages.

Maintained by Adrian Baddeley. Last updated 15 days ago.

kernel-density point-process spatial-analysis spatial-data spatial-data-analysis spatstat statistical-analysis statistical-methods statistical-tests statistics

3.8 match 6 stars 11.07 score 186 scripts 228 dependents

mlr-org

mlr3torch:Deep Learning with 'mlr3'

Deep Learning library that extends the mlr3 framework by building upon the 'torch' package. It allows to conveniently build, train, and evaluate deep learning models without having to worry about low level details. Custom architectures can be created using the graph language defined in 'mlr3pipelines'.

Maintained by Sebastian Fischer. Last updated 2 months ago.

data-science deep-learning machine-learning mlr3 torch

4.9 match 42 stars 7.63 score 78 scripts

r-forge

multcomp:Simultaneous Inference in General Parametric Models

Simultaneous tests and confidence intervals for general linear hypotheses in parametric models, including linear, generalized linear, linear mixed effects, and survival models. The package includes demos reproducing analyzes presented in the book "Multiple Comparisons Using R" (Bretz, Hothorn, Westfall, 2010, CRC Press).

Maintained by Torsten Hothorn. Last updated 2 months ago.

2.8 match 13.50 score 7.5k scripts 369 dependents

mflores72000

ILS:Interlaboratory Study

It performs interlaboratory studies (ILS) to detect those laboratories that provide non-consistent results when comparing to others. It permits to work simultaneously with various testing materials, from standard univariate, and functional data analysis (FDA) perspectives. The univariate approach based on ASTM E691-08 consist of estimating the Mandel's h and k statistics to identify those laboratories that provide more significant different results, testing also the presence of outliers by Cochran and Grubbs tests, Analysis of variance (ANOVA) techniques are provided (F and Tuckey tests) to test differences in means corresponding to different laboratories per each material. Taking into account the functional nature of data retrieved in analytical chemistry, applied physics and engineering (spectra, thermograms, etc.). ILS package provides a FDA approach for finding the Mandel's k and h statistics distribution by smoothing bootstrap resampling.

Maintained by Miguel Flores. Last updated 2 years ago.

5.6 match 6.48 score 75 scripts

cubiczebra

TPMplt:Tool-Kit for Dynamic Materials Model and Thermal Processing Maps

Provides a simple approach for constructing dynamic materials modeling suggested by Prasad and Gegel (1984) <doi:10.1007/BF02664902>. It can easily generate various processing-maps based on this model as well. The calculation result in this package contains full materials constants, information about power dissipation efficiency factor, and rheological properties, can be exported completely also, through which further analysis and customized plots will be applicable as well.

Maintained by Chen Zhang. Last updated 6 months ago.

7.0 match 2 stars 4.76 score 29 scripts

f0nzie

rODE:Ordinary Differential Equation (ODE) Solvers Written in R Using S4 Classes

Show physics, math and engineering students how an ODE solver is made and how effective R classes can be for the construction of the equations that describe natural phenomena. Inspiration for this work comes from the book on "Computer Simulations in Physics" by Harvey Gould, Jan Tobochnik, and Wolfgang Christian. Book link: <http://www.compadre.org/osp/items/detail.cfm?ID=7375>.

Maintained by Alfonso R. Reyes. Last updated 7 years ago.

5.8 match 5.50 score 71 scripts

laurabruckman

netSEM:Network Structural Equation Modeling

The network structural equation modeling conducts a network statistical analysis on a data frame of coincident observations of multiple continuous variables [1]. It builds a pathway model by exploring a pool of domain knowledge guided candidate statistical relationships between each of the variable pairs, selecting the 'best fit' on the basis of a specific criteria such as adjusted r-squared value. This material is based upon work supported by the U.S. National Science Foundation Award EEC-2052776 and EEC-2052662 for the MDS-Rely IUCRC Center, under the NSF Solicitation: NSF 20-570 Industry-University Cooperative Research Centers Program [1] Bruckman, Laura S., Nicholas R. Wheeler, Junheng Ma, Ethan Wang, Carl K. Wang, Ivan Chou, Jiayang Sun, and Roger H. French. (2013) <doi:10.1109/ACCESS.2013.2267611>.

Maintained by Laura S. Bruckman. Last updated 2 years ago.

8.5 match 3.72 score 13 scripts

dreamrs

shinyWidgets:Custom Inputs Widgets for Shiny

Collection of custom input controls and user interface components for 'Shiny' applications. Give your applications a unique and colorful style !

Maintained by Victor Perrier. Last updated 27 days ago.

shiny

1.8 match 849 stars 17.05 score 8.1k scripts 218 dependents

troyhill

coreCT:Programmatic Analysis of Sediment Cores Using Computed Tomography Imaging

Computed tomography (CT) imaging is a powerful tool for understanding the composition of sediment cores. This package streamlines and accelerates the analysis of CT data generated in the context of environmental science. Included are tools for processing raw DICOM images to characterize sediment composition (sand, peat, etc.). Root analyses are also enabled, including measures of external surface area and volumes for user-defined root size classes. For a detailed description of the application of computed tomography imaging for sediment characterization, see: Davey, E., C. Wigand, R. Johnson, K. Sundberg, J. Morris, and C. Roman. (2011) <DOI: 10.1890/10-2037.1>.

Maintained by Troy D. Hill. Last updated 4 years ago.

biomass computed-tomography sediment sediment-core

6.7 match 3 stars 4.41 score 17 scripts

jimbrig

rtraining:R Training Resources, Guides, Tips, and Knowledge Base

Houses variouse material realted to teaching R.

Maintained by Jimmy Briggs. Last updated 2 years ago.

best-practices curation developer-tools development development-environment guide knowledge package-development setup shiny-apps tips-and-tricks training training-materials walkthrough

8.1 match 4 stars 3.60 score 6 scripts

tbep-tech

tbeploads:Calculate Loading Data to Tampa Bay

Loading data from major sources to Tampa Bay are calculated on a monthly or annual basis. Major sources include domestic point source (reuse, end of pipe), industrial point source, material losses, non-point sources (MS4), atmospheric deposition, and groundwater.

Maintained by Marcus Beck. Last updated 8 months ago.

data-analysis loads tampa-bay tbep tbnmc water-quality

7.3 match 3.81 score 3 scripts

paulnorthrop

smovie:Some Movies to Illustrate Concepts in Statistics

Provides movies to help students to understand statistical concepts. The 'rpanel' package <https://cran.r-project.org/package=rpanel> is used to create interactive plots that move to illustrate key statistical ideas and methods. There are movies to: visualise probability distributions (including user-supplied ones); illustrate sampling distributions of the sample mean (central limit theorem), the median, the sample maximum (extremal types theorem) and (the Fisher transformation of the) product moment correlation coefficient; examine the influence of an individual observation in simple linear regression; illustrate key concepts in statistical hypothesis testing. Also provided are dpqr functions for the distribution of the Fisher transformation of the correlation coefficient under sampling from a bivariate normal distribution.

Maintained by Paul J. Northrop. Last updated 1 years ago.

central-limit-theorem correlation-coefficient extremal-types-theorem extremes hypothesis-testing likelihood-ratio-test linear-regression log-likelihood movie probability-distributions regression score-test statistical-concepts statistics statistics-learning teaching teaching-materials test-statistic wald-test

7.5 match 1 stars 3.70 score 10 scripts

kjhealy

gssrdoc:Document General Social Survey Variable

The General Social Survey (GSS) is a long-running, mostly annual survey of US households. It is administered by the National Opinion Research Center (NORC). This package contains the a tibble with information on the survey variables, together with every variable documented as an R help page. For more information on the GSS see \url{http://gss.norc.org}.

Maintained by Kieran Healy. Last updated 12 months ago.

11.3 match 2.28 score 38 scripts

charvey23

AvInertia:Calculate the Inertial Properties of a Flying Bird

Tools to compute the center of gravity and moment of inertia tensor of any flying bird. The tools function by modeling a bird as a composite structure of simple geometric objects. This requires detailed morphological measurements of bird specimens although those obtained for the associated paper have been included in the package for use. Refer to the vignettes and supplementary material for detailed information on the package function.

Maintained by Christina Harvey. Last updated 3 years ago.

5.0 match 6 stars 5.00 score 33 scripts

stla

shinyDatetimePickers:Some Datetime Pickers for 'Shiny'

Provides three types of datetime pickers for usage in a 'Shiny' UI. A datetime picker is an input field for selecting both a date and a time.

Maintained by Stéphane Laurent. Last updated 1 years ago.

react reactr shiny

6.0 match 14 stars 4.05 score 16 scripts

omega1x

pipenostics:Diagnostics, Reliability and Predictive Maintenance of Pipeline Systems

Functions that represent some useful empirical and data-driven models for heat loss, corrosion diagnostics, and predictive maintenance of pipeline systems. The package is designed for engineers who are involved in exploratory or routine calculations. Methods are described in Timashev et al. (2016) <doi:10.1007/978-3-319-25307-7>, A.C.Reddy (2017) <doi:10.1016/j.matpr.2017.07.081>, Minenergo (2008) <https://docs.cntd.ru/document/902148459>, Minenergo (2005) <https://docs.cntd.ru/document/1200035568>, Xing LU. (2014) <doi:10.1080/23744731.2016.1258371>.

Maintained by Yuri Possokhov. Last updated 11 months ago.

district-heating heat-losses inline-inspection remaining-useful-life

5.1 match 2 stars 4.73 score 108 scripts

datatrail-jhu

rgoogleclassroom:API Wrapper for Google Classroom and Google Forms

This is a Google Forms and Google Classroom API Wrapper for R for managing Google Classrooms from R. The documentation for these APIs is here <https://developers.google.com/forms/api/guides> .

Maintained by Candace Savonen. Last updated 1 years ago.

5.7 match 2 stars 4.00 score 6 scripts

dyfanjones

noctua:Connect to 'AWS Athena' using R 'AWS SDK' 'paws' ('DBI' Interface)

Designed to be compatible with the 'R' package 'DBI' (Database Interface) when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>. To do this the 'R' 'AWS' Software Development Kit ('SDK') 'paws' <https://github.com/paws-r/paws> is used as a driver.

Maintained by Dyfan Jones. Last updated 12 months ago.

athena aws database

3.0 match 46 stars 7.48 score 58 scripts

bioc

vidger:Create rapid visualizations of RNAseq data in R

The aim of vidger is to rapidly generate information-rich visualizations for the interpretation of differential gene expression results from three widely-used tools: Cuffdiff, DESeq2, and edgeR.

Maintained by Brandon Monier. Last updated 5 months ago.

immunooncology visualization rnaseq differentialexpression geneexpression data-munging differential-expression gene-expression rna-seq-analysis

3.3 match 19 stars 6.61 score 27 scripts

edwindj

cbsodataR:Statistics Netherlands (CBS) Open Data API Client

The data and meta data from Statistics Netherlands (<https://www.cbs.nl>) can be browsed and downloaded. The client uses the open data API of Statistics Netherlands.

Maintained by Edwin de Jonge. Last updated 6 months ago.

cbs census-data officialstatistics opendata statistics-netherlands

2.9 match 33 stars 7.23 score 173 scripts

dyfanjones

RAthena:Connect to 'AWS Athena' using 'Boto3' ('DBI' Interface)

Designed to be compatible with the R package 'DBI' (Database Interface) when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>. To do this 'Python' 'Boto3' Software Development Kit ('SDK') <https://boto3.amazonaws.com/v1/documentation/api/latest/index.html> is used as a driver.

Maintained by Dyfan Jones. Last updated 1 years ago.

athena aws boto3 database

3.0 match 37 stars 6.99 score 38 scripts

dieghernan

tidyterra:'tidyverse' Methods and 'ggplot2' Helpers for 'terra' Objects

Extension of the 'tidyverse' for 'SpatRaster' and 'SpatVector' objects of the 'terra' package. It includes also new 'geom_' functions that provide a convenient way of visualizing 'terra' objects with 'ggplot2'.

Maintained by Diego Hernangómez. Last updated 7 hours ago.

terra ggplot-extension r-spatial rspatial

1.5 match 190 stars 13.59 score 1.9k scripts 26 dependents

winvector

vtreat:A Statistically Sound 'data.frame' Processor/Conditioner

A 'data.frame' processor/conditioner that prepares real-world data for predictive modeling in a statistically sound manner. 'vtreat' prepares variables so that data has fewer exceptional cases, making it easier to safely use models in production. Common problems 'vtreat' defends against: 'Inf', 'NA', too many categorical levels, rare categorical levels, and new categorical levels (levels seen during application, but not during training). Reference: "'vtreat': a data.frame Processor for Predictive Modeling", Zumel, Mount, 2016, <DOI:10.5281/zenodo.1173313>.

Maintained by John Mount. Last updated 3 months ago.

categorical-variables machine-learning-algorithms nested-models prepare-data

1.8 match 285 stars 11.19 score 328 scripts 1 dependents

emptyfield-ds

emptyfield:Install Empty Field Learning Materials

Install learning materials from Empty Field Data Science.

Maintained by Malcolm Barrett. Last updated 3 years ago.

7.4 match 1 stars 2.65 score 1 scripts 3 dependents

rstudio

pointblank:Data Validation and Organization of Metadata for Local and Remote Tables

Validate data in data frames, 'tibble' objects, 'Spark' 'DataFrames', and database tables. Validation pipelines can be made using easily-readable, consecutive validation steps. Upon execution of the validation plan, several reporting options are available. User-defined thresholds for failure rates allow for the determination of appropriate reporting actions. Many other workflows are available including an information management workflow, where the aim is to record, collect, and generate useful information on data tables.

Maintained by Richard Iannone. Last updated 6 days ago.

data-assertions data-checker data-dictionaries data-frames data-inference data-management data-profiler data-quality data-validation data-verification database-tables easy-to-understand reporting-tool schema-validation testing-tools yaml-configuration

1.8 match 942 stars 10.73 score 284 scripts

vabar

vibass:Valencia International Bayesian Summer School

Materials for the introductory course on Bayesian inference. Practicals, data and interactive apps.

Maintained by Facundo Muñoz. Last updated 9 months ago.

bayesian-inference teaching

3.5 match 7 stars 5.40 score 2 scripts

ncss-tech

soilDB:Soil Database Interface

A collection of functions for reading soil data from U.S. Department of Agriculture Natural Resources Conservation Service (USDA-NRCS) and National Cooperative Soil Survey (NCSS) databases.

Maintained by Andrew Brown. Last updated 6 hours ago.

kssl nasis nrcs soil soil-data-access soil-survey soilweb sql usda

1.7 match 86 stars 11.19 score 1.0k scripts 1 dependents

rinterface

shinydashboardPlus:Add More 'AdminLTE2' Components to 'shinydashboard'

Extend 'shinydashboard' with 'AdminLTE2' components. 'AdminLTE2' is a free 'Bootstrap 3' dashboard template available at <https://adminlte.io>. Customize boxes, add timelines and a lot more.

Maintained by David Granjon. Last updated 8 months ago.

dashboard hacktoberfest2022 shiny shiny-apps shinydashboard

1.3 match 461 stars 13.82 score 1.1k scripts 28 dependents

tesselle

nexus:Sourcing Archaeological Materials by Chemical Composition

Exploration and analysis of compositional data in the framework of Aitchison (1986, ISBN: 978-94-010-8324-9). This package provides tools for chemical fingerprinting and source tracking of ancient materials.

Maintained by Nicolas Frerebeau. Last updated 28 days ago.

archaeology archaeological-science archaeometry compositional-data provenance-studies

3.5 match 5.21 score 26 scripts 1 dependents

maelstrom-research

madshapR:Support Technical Processes Following 'Maelstrom Research' Standards

Functions to support rigorous processes in data cleaning, evaluation, and documentation across datasets from different studies based on Maelstrom Research guidelines. The package includes the core functions to evaluate and format the main inputs that define the process, diagnose errors, and summarize and evaluate datasets and their associated data dictionaries. The main outputs are clean datasets and associated metadata, and tabular and visual summary reports. As described in Maelstrom Research guidelines for rigorous retrospective data harmonization (Fortier I and al. (2017) <doi:10.1093/ije/dyw075>).

Maintained by Guillaume Fabre. Last updated 11 months ago.

3.4 match 2 stars 5.40 score 28 scripts 3 dependents

rstudio

tfruns:Training Run Tools for 'TensorFlow'

Create and manage unique directories for each 'TensorFlow' training run. Provides a unique, time stamped directory for each run along with functions to retrieve the directory of the latest run or latest several runs.

Maintained by Tomasz Kalinowski. Last updated 12 months ago.

1.5 match 34 stars 11.80 score 325 scripts 77 dependents

f-rousset

spaMM:Mixed-Effect Models, with or without Spatial Random Effects

Inference based on models with or without spatially-correlated random effects, multivariate responses, or non-Gaussian random effects (e.g., Beta). Variation in residual variance (heteroscedasticity) can itself be represented by a mixed-effect model. Both classical geostatistical models (Rousset and Ferdy 2014 <doi:10.1111/ecog.00566>), and Markov random field models on irregular grids (as considered in the 'INLA' package, <https://www.r-inla.org>), can be fitted, with distinct computational procedures exploiting the sparse matrix representations for the latter case and other autoregressive models. Laplace approximations are used for likelihood or restricted likelihood. Penalized quasi-likelihood and other variants discussed in the h-likelihood literature (Lee and Nelder 2001 <doi:10.1093/biomet/88.4.987>) are also implemented.

Maintained by François Rousset. Last updated 10 months ago.

gsl cpp openmp

3.6 match 4.94 score 208 scripts 5 dependents

easystats

report:Automated Reporting of Results and Statistical Models

The aim of the 'report' package is to bridge the gap between R’s output and the formatted results contained in your manuscript. This package converts statistical models and data frames into textual reports suited for publication, ensuring standardization and quality in results reporting.

Maintained by Rémi Thériault. Last updated 2 months ago.

anovas apa automated-report-generation automatic bayesian describe easystats hacktoberfest manuscript models report reporting reports scientific statsmodels

1.2 match 698 stars 14.48 score 1.1k scripts 3 dependents

bioc

systemPipeR:systemPipeR: Workflow Environment for Data Analysis and Report Generation

systemPipeR is a multipurpose data analysis workflow environment that unifies R with command-line tools. It enables scientists to analyze many types of large- or small-scale data on local or distributed computer systems with a high level of reproducibility, scalability and portability. At its core is a command-line interface (CLI) that adopts the Common Workflow Language (CWL). This design allows users to choose for each analysis step the optimal R or command-line software. It supports both end-to-end and partial execution of workflows with built-in restart functionalities. Efficient management of complex analysis tasks is accomplished by a flexible workflow control container class. Handling of large numbers of input samples and experimental designs is facilitated by consistent sample annotation mechanisms. As a multi-purpose workflow toolkit, systemPipeR enables users to run existing workflows, customize them or design entirely new ones while taking advantage of widely adopted data structures within the Bioconductor ecosystem. Another important core functionality is the generation of reproducible scientific analysis and technical reports. For result interpretation, systemPipeR offers a wide range of plotting functionality, while an associated Shiny App offers many useful functionalities for interactive result exploration. The vignettes linked from this page include (1) a general introduction, (2) a description of technical details, and (3) a collection of workflow templates.

Maintained by Thomas Girke. Last updated 5 months ago.

genetics infrastructure dataimport sequencing rnaseq riboseq chipseq methylseq snp geneexpression coverage genesetenrichment alignment qualitycontrol immunooncology reportwriting workflowstep workflowmanagement

1.5 match 53 stars 11.52 score 344 scripts 3 dependents

emptyfield-ds

quarto.workshop:Install Materials for Reproducible Research in R with Quarto

Install learning materials for Reproducible Research in R with Quarto.

Maintained by Malcolm Barrett. Last updated 2 years ago.

7.3 match 4 stars 2.30 score

j-ramalho

industRial:Data, Functions and Support Materials from the Book "industRial Data Science"

Companion package to the book "industRial data science", J.Ramalho (2021) <https://j-ramalho.github.io/industRial/>. Provides data sets and functions to complete the case studies and contains the book original Rmd files and tutorials.

Maintained by Joao Ramalho. Last updated 3 years ago.

6.2 match 1 stars 2.70 score 5 scripts

jeroendmulder

powRICLPM:Perform Power Analysis for the RI-CLPM and STARTS Model

Perform user-friendly power analyses for the random intercept cross-lagged panel model (RI-CLPM) and the bivariate stable trait autoregressive trait state (STARTS) model. The strategy as proposed by Mulder (2023) <doi:10.1080/10705511.2022.2122467> is implemented. Extensions include the use of parameter constraints over time, bounded estimation, generation of data with skewness and kurtosis, and the option to setup the power analysis for Mplus.

Maintained by Jeroen Mulder. Last updated 5 months ago.

3.0 match 4 stars 5.56 score 10 scripts

cmstatr

cmstatrExt:More Statistical Methods for Composite Material Data

A companion package to 'cmstatr' <https://cran.r-project.org/package=cmstatr>. 'cmstatr' contains statistical methods that are published in the Composite Materials Handbook, Volume 1 (2012, ISBN: 978-0-7680-7811-4), while 'cmstatrExt' contains statistical methods that are not included in that handbook.

Maintained by Stefan Kloppenborg. Last updated 11 months ago.

cpp

3.5 match 1 stars 4.34 score 11 scripts

sigbertklinke

mmstat4:Access to Teaching Materials from a ZIP File or GitHub

Provides access to teaching materials for various statistics courses, including R and Python programs, Shiny apps, data, and PDF/HTML documents. These materials are stored on the Internet as a ZIP file (e.g., in a GitHub repository) and can be downloaded and displayed or run locally. The content of the ZIP file is temporarily or permanently stored. By default, the package uses the GitHub repository 'sigbertklinke/mmstat4.data.' Additionally, the package includes 'association_measures.R' from the archived package 'ryouready' by Mark Heckman and some auxiliary functions.

Maintained by Sigbert Klinke. Last updated 7 months ago.

3.7 match 4.00 score 1 scripts

tsuda16k

materialmodifier:Apply Photo Editing Effects

You can apply image processing effects that modifies the perceived material properties of objects in photos, such as gloss, smoothness, and blemishes. This is an implementation of the algorithm proposed by Boyadzhiev et al. (2015) "Band-Sifting Decomposition for Image Based Material Editing". Documentation and practical tips of the package is available at <https://github.com/tsuda16k/materialmodifier>.

Maintained by Hiroyuki Tsuda. Last updated 2 years ago.

4.4 match 4 stars 3.30 score 3 scripts

cdalzell

Lahman:Sean 'Lahman' Baseball Database

Provides the tables from the 'Sean Lahman Baseball Database' as a set of R data.frames. It uses the data on pitching, hitting and fielding performance and other tables from 1871 through 2023, as recorded in the 2024 version of the database. Documentation examples show how many baseball questions can be investigated.

Maintained by Chris Dalzell. Last updated 4 months ago.

1.2 match 79 stars 12.00 score 1.7k scripts 2 dependents

femiguez

nlraa:Nonlinear Regression for Agricultural Applications

Additional nonlinear regression functions using self-start (SS) algorithms. One of the functions is the Beta growth function proposed by Yin et al. (2003) <doi:10.1093/aob/mcg029>. There are several other functions with breakpoints (e.g. linear-plateau, plateau-linear, exponential-plateau, plateau-exponential, quadratic-plateau, plateau-quadratic and bilinear), a non-rectangular hyperbola and a bell-shaped curve. Twenty eight (28) new self-start (SS) functions in total. This package also supports the publication 'Nonlinear regression Models and applications in agricultural research' by Archontoulis and Miguez (2015) <doi:10.2134/agronj2012.0506>, a book chapter with similar material <doi:10.2134/appliedstatistics.2016.0003.c15> and a publication by Oddi et. al. (2019) in Ecology and Evolution <doi:10.1002/ece3.5543>. The function 'nlsLMList' uses 'nlsLM' for fitting, but it is otherwise almost identical to 'nlme::nlsList'.In addition, this release of the package provides functions for conducting simulations for 'nlme' and 'gnls' objects as well as bootstrapping. These functions are intended to work with the modeling framework of the 'nlme' package. It also provides four vignettes with extended examples.

Maintained by Fernando Miguez. Last updated 11 months ago.

agricultural ecology nonlinear-mixed-models nonlinear-regression

1.8 match 23 stars 8.19 score 112 scripts 2 dependents

ncss-tech

sharpshootR:A Soil Survey Toolkit

A collection of data processing, visualization, and export functions to support soil survey operations. Many of the functions build on the `SoilProfileCollection` S4 class provided by the aqp package, extending baseline visualization to more elaborate depictions in the context of spatial and taxonomic data. While this package is primarily developed by and for the USDA-NRCS, in support of the National Cooperative Soil Survey, the authors strive for generalization sufficient to support any soil survey operation. Many of the included functions are used by the SoilWeb suite of websites and movile applications. These functions are provided here, with additional documentation, to enable others to replicate high quality versions of these figures for their own purposes.

Maintained by Dylan Beaudette. Last updated 28 days ago.

1.7 match 18 stars 8.37 score 327 scripts

janlisec

eCerto:Statistical Tests for the Production of Reference Materials

The production of certified reference materials (CRMs) requires various statistical tests depending on the task and recorded data to ensure that reported values of CRMs are appropriate. Often these tests are performed according to the procedures described in 'ISO GUIDE 35:2017'. The 'eCerto' package contains a 'Shiny' app which provides functionality to load, process, report and backup data recorded during CRM production and facilitates following the recommended procedures. It is described in Lisec et al (2023) <doi:10.1007/s00216-023-05099-3> and can also be accessed online <https://apps.bam.de/shn00/eCerto/> without package installation.

Maintained by Jan Lisec. Last updated 4 days ago.

3.5 match 4.06 score 2 scripts

bioc

geneplast:Evolutionary and plasticity analysis of orthologous groups

Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.

Maintained by Mauro Castro. Last updated 5 months ago.

genetics generegulation systemsbiology

3.3 match 4.13 score 17 scripts

iembry

ie2miscdata:Irucka Embry's Miscellaneous USGS Data Collection

A collection of Irucka Embry's miscellaneous USGS data sets (USGS Parameter codes with fixed values, USGS global time zone codes, and US Air Force Global Engineering Weather Data). Irucka created these data sets while a Cherokee Nation Technology Solutions (CNTS) United States Geological Survey (USGS) Contractor and/or USGS employee.

Maintained by Irucka Embry. Last updated 2 years ago.

3.4 match 4.00 score

glenndavis52

colorscience:Color Science Methods and Data

Methods and data for color science - color conversions by observer, illuminant, and gamma. Color matching functions and chromaticity diagrams. Color indices, color differences, and spectral data conversion/analysis. This package is deprecated and will someday be removed; for reasons and details please see the README file.

Maintained by Glenn Davis. Last updated 11 months ago.

3.4 match 4 stars 3.93 score 214 scripts

oblarquez

GCD:Global Charcoal Database

Contains the Global Charcoal database data. Data include charcoal series (age, depth, charcoal quantity, associated units and methods) and information on sedimentary sites (localisation, depositional environment, biome, etc.) as well as publications informations. Since 4.0.0 the GCD mirrors the online SQL database at <http://paleofire.org>.

Maintained by Olivier Blarquez. Last updated 4 years ago.

4.5 match 1 stars 2.98 score 12 scripts

crunch-io

crunch:Crunch.io Data Tools

The Crunch.io service <https://crunch.io/> provides a cloud-based data store and analytic engine, as well as an intuitive web interface. Using this package, analysts can interact with and manipulate Crunch datasets from within R. Importantly, this allows technical researchers to collaborate naturally with team members, managers, and clients who prefer a point-and-click interface.

Maintained by Greg Freedman Ellis. Last updated 10 days ago.

1.3 match 9 stars 10.47 score 200 scripts 2 dependents

ropensci

weatherOz:An API Client for Australian Weather and Climate Data Resources

Provides automated downloading, parsing and formatting of weather data for Australia through API endpoints provided by the Department of Primary Industries and Regional Development ('DPIRD') of Western Australia and by the Science and Technology Division of the Queensland Government's Department of Environment and Science ('DES'). As well as the Bureau of Meteorology ('BOM') of the Australian government precis and coastal forecasts, and downloading and importing radar and satellite imagery files. 'DPIRD' weather data are accessed through public 'APIs' provided by 'DPIRD', <https://www.agric.wa.gov.au/weather-api-20>, providing access to weather station data from the 'DPIRD' weather station network. Australia-wide weather data are based on data from the Australian Bureau of Meteorology ('BOM') data and accessed through 'SILO' (Scientific Information for Land Owners) Jeffrey et al. (2001) <doi:10.1016/S1364-8152(01)00008-1>. 'DPIRD' data are made available under a Creative Commons Attribution 3.0 Licence (CC BY 3.0 AU) license <https://creativecommons.org/licenses/by/3.0/au/deed.en>. SILO data are released under a Creative Commons Attribution 4.0 International licence (CC BY 4.0) <https://creativecommons.org/licenses/by/4.0/>. 'BOM' data are (c) Australian Government Bureau of Meteorology and released under a Creative Commons (CC) Attribution 3.0 licence or Public Access Licence ('PAL') as appropriate, see <http://www.bom.gov.au/other/copyright.shtml> for further details.

Maintained by Rodrigo Pires. Last updated 1 months ago.

dpird bom meteorological-data weather-forecast australia weather weather-data meteorology western-australia australia-bureau-of-meteorology western-australia-agriculture australia-agriculture australia-climate australia-weather api-client climate data rainfall weather-api

1.5 match 31 stars 8.47 score 40 scripts

zsteinmetz

envalysis:Miscellaneous Functions for Environmental Analyses

Small toolbox for data analyses in environmental chemistry and ecotoxicology. Provides, for example, calibration() to calculate calibration curves and corresponding limits of detection (LODs) and limits of quantification (LOQs) according to German DIN 32645 (2008). texture() makes it easy to estimate soil particle size distributions from hydrometer measurements (ASTM D422-63, 2007).

Maintained by Zacharias Steinmetz. Last updated 6 months ago.

analytics chemistry ecotoxicology environment soil

2.0 match 8 stars 6.30 score 83 scripts

emptyfield-ds

rrr.workshop:Install Materials for Reproducible Research in R

Install learning materials for Reproducible Research in R.

Maintained by Malcolm Barrett. Last updated 4 years ago.

7.4 match 1.70 score 1 scripts

emptyfield-ds

rpkg.workshop:Install Materials for Developing R Packages

Install learning materials for Developing R Packages.

Maintained by Malcolm Barrett. Last updated 3 years ago.

7.4 match 1.70 score 1 scripts

gaborcsardi

sankey:Illustrate the Flow of Information or Material

Plots that illustrate the flow of information or material.

Maintained by Gábor Csárdi. Last updated 7 years ago.

3.7 match 3 stars 3.29 score 13 scripts

lilyclements

carbonr:Calculate Carbon-Equivalent Emissions

Provides a flexible tool for calculating carbon-equivalent emissions. Mostly using data from the UK Government's Greenhouse Gas Conversion Factors report <https://www.gov.uk/government/publications/greenhouse-gas-reporting-conversion-factors-2023>, it facilitates transparent emissions calculations for various sectors, including travel, accommodation, and clinical activities. The package is designed for easy integration into R workflows, with additional support for 'shiny' applications and community-driven extensions.

Maintained by Lily Clements. Last updated 6 months ago.

3.9 match 3.16 score 29 scripts

nx10

unigd:Universal Graphics Device

A unified R graphics backend. Render R graphics fast and easy to many common file formats. Provides a thread safe 'C' interface for asynchronous rendering of R graphics.

Maintained by Florian Rupprecht. Last updated 16 days ago.

cairo tiff libpng zlib cpp

1.5 match 23 stars 8.07 score 6 scripts 2 dependents

r-spatial

link2GI:Linking Geographic Information Systems, Remote Sensing and Other Command Line Tools

Functions and tools for using open GIS and remote sensing command-line interfaces in a reproducible environment.

Maintained by Chris Reudenbach. Last updated 4 months ago.

1.3 match 26 stars 8.99 score 78 scripts 1 dependents

wzhang17

lchemix:A Bayesian Multi-Dimensional Couple-Based Latent Risk Model

A joint latent class model where a hierarchical structure exists, with an interaction between female and male partners of a couple. A Bayesian perspective to inference and Markov chain Monte Carlo algorithms to obtain posterior estimates of model parameters. The reference paper is: Beom Seuk Hwang, Zhen Chen, Germaine M.Buck Louis, Paul S. Albert, (2018) "A Bayesian multi-dimensional couple-based latent risk model with an application to infertility". Biometrics, 75, 315-325. <doi:10.1111/biom.12972>.

Maintained by Weimin Zhang. Last updated 5 years ago.

3.1 match 3.70 score 2 scripts

muschellij2

freesurfer:Wrapper Functions for 'Freesurfer'

Wrapper functions that interface with 'Freesurfer' <https://surfer.nmr.mgh.harvard.edu/>, a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'Freesurfer' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'Freesurfer' command and returns an R object of class 'nifti' or necessary output.

Maintained by John Muschelli. Last updated 4 months ago.

1.5 match 10 stars 7.69 score 55 scripts 1 dependents

pschmidtwalter

LWFBrook90R:Simulate Evapotranspiration and Soil Moisture with the SVAT Model LWF-Brook90

Provides a flexible and easy-to use interface for the soil vegetation atmosphere transport (SVAT) model LWF-BROOK90, written in Fortran. The model simulates daily transpiration, interception, soil and snow evaporation, streamflow and soil water fluxes through a soil profile covered with vegetation, as described in Hammel & Kennel (2001, ISBN:978-3-933506-16-0) and Federer et al. (2003) <doi:10.1175/1525-7541(2003)004%3C1276:SOAETS%3E2.0.CO;2>. A set of high-level functions for model set up, execution and parallelization provides easy access to plot-level SVAT simulations, as well as multi-run and large-scale applications.

Maintained by Paul Schmidt-Walter. Last updated 6 months ago.

evapotranspiration modeling waterbalance waterflux fortran

1.8 match 11 stars 6.38 score 27 scripts

skranz

RTutor:Interactive R problem sets with automatic testing of solutions and automatic hints

Interactive R problem sets with automatic testing of solutions and automatic hints

Maintained by Sebastian Kranz. Last updated 1 years ago.

economics learn-to-code problem-set rstudio rtutor shiny teaching

1.9 match 205 stars 5.83 score 111 scripts 1 dependents

bioc

signatureSearch:Environment for Gene Expression Searching Combined with Functional Enrichment Analysis

This package implements algorithms and data structures for performing gene expression signature (GES) searches, and subsequently interpreting the results functionally with specialized enrichment methods.

Maintained by Brendan Gongol. Last updated 5 months ago.

software geneexpression go kegg networkenrichment sequencing coverage differentialexpression cpp

1.5 match 18 stars 7.20 score 74 scripts 1 dependents

shwilks

r3js:'WebGL'-Based 3D Plotting using the 'three.js' Library

Provides R and 'JavaScript' functions to allow 'WebGL'-based 3D plotting using the 'three.js' 'JavaScript' library. Interactivity through roll-over highlighting and toggle buttons is also supported.

Maintained by Sam Wilks. Last updated 5 months ago.

3d-graphics plotting

1.8 match 14 stars 5.99 score 47 scripts

r-forge

CHNOSZ:Thermodynamic Calculations and Diagrams for Geochemistry

An integrated set of tools for thermodynamic calculations in aqueous geochemistry and geobiochemistry. Functions are provided for writing balanced reactions to form species from user-selected basis species and for calculating the standard molal properties of species and reactions, including the standard Gibbs energy and equilibrium constant. Calculations of the non-equilibrium chemical affinity and equilibrium chemical activity of species can be portrayed on diagrams as a function of temperature, pressure, or activity of basis species; in two dimensions, this gives a maximum affinity or predominance diagram. The diagrams have formatted chemical formulas and axis labels, and water stability limits can be added to Eh-pH, oxygen fugacity- temperature, and other diagrams with a redox variable. The package has been developed to handle common calculations in aqueous geochemistry, such as solubility due to complexation of metal ions, mineral buffers of redox or pH, and changing the basis species across a diagram ("mosaic diagrams"). CHNOSZ also implements a group additivity algorithm for the standard thermodynamic properties of proteins.

Maintained by Jeffrey Dick. Last updated 24 days ago.

fortran

1.1 match 9.46 score 238 scripts 4 dependents

troyhill

NitrogenUptake2016:Data and Source Code From: Nitrogen Uptake and Allocation Estimates for Spartina Alterniflora and Distichlis Spicata

Contains data, code, and figures from Hill et al. 2018a (Journal of Experimental Marine Biology and Ecology; <DOI: 10.1016/j.jembe.2018.07.006>) and Hill et al. 2018b (Data In Brief <DOI: 10.1016/j.dib.2018.09.133>). Datasets document plant allometry, stem heights, nutrient and stable isotope content, and sediment denitrification enzyme assays. The data and analysis offer an examination of nitrogen uptake and allocation in two salt marsh plant species.

Maintained by Troy D. Hill. Last updated 6 years ago.

nitrogen open-data open-science salt-marsh

2.5 match 1 stars 4.15 score 14 scripts

jefferis

readobj:Fast Reader for 'Wavefront' OBJ 3D Scene Files

Wraps 'tiny_obj_loader' C++ library for reading the 'Wavefront' OBJ 3D file format including both mesh objects and materials files. The resultant R objects are either structured to match the 'tiny_obj_loader' internal data representation or in a form directly compatible with the 'rgl' package.

Maintained by Gregory Jefferis. Last updated 3 years ago.

3d-models rgl tinyobjloader wavefront-obj cpp

2.2 match 8 stars 4.64 score 18 scripts 1 dependents

kwb-r

flextreat.hydrus1d:R Package for Soil Water Balance and Solute Transport Modelling Scenarios for Project Flextreat

R Package for Soil Water Balance and Solute Transport Modelling Scenarios for Project Flextreat.

Maintained by Michael Rustler. Last updated 3 months ago.

hydrus-1d project-flextreat soil-water-modelling

6.0 match 1.70 score 10 scripts

mrosas47

ismtchile:Calculating Socio Material Territorial Index

Paquete creado con el fin de facilitar el cálculo y distribución del índice Socio Material Territorial (ISMT), elaborado por el Observatorio de Ciudades UC. La metodología completa está disponible en "ISMT" (<https://ideocuc-ocuc.hub.arcgis.com/datasets/6ed956450cfc4293b7d90df3ce3474e4/about>) [Observatorio de Ciudades UC (2019)]. || Package created to facilitate the calculation and distribution of the Socio-Material Territorial Index by Observatorio de Ciudades UC. The full methodology is available at "ISMT" (<https://ideocuc-ocuc.hub.arcgis.com/datasets/6ed956450cfc4293b7d90df3ce3474e4/about>) [Observatorio de Ciudades UC (2019)].

Maintained by Martín Rosas Araya. Last updated 2 years ago.

3.8 match 1 stars 2.70 score 3 scripts

cran

TestDimorph:Analysis of the Interpopulation Difference in Degree of Sexual Dimorphism Using Summary Statistics

Offers a solution for the unavailability of raw data in most anthropological studies by facilitating the calculations of several sexual dimorphism related analyses using the published summary statistics of metric data (mean, standard deviation and sex specific sample size) as illustrated by the works of Relethford, J. H., & Hodges, D. C. (1985) <doi:10.1002/ajpa.1330660105>, Greene, D. L. (1989) <doi:10.1002/ajpa.1330790113> and Konigsberg, L. W. (1991) <doi:10.1002/ajpa.1330840110>.

Maintained by Bassam A. Abulnoor. Last updated 1 years ago.

3.8 match 1 stars 2.70 score

peterkdunn

GLMsData:Generalized Linear Model Data Sets

Data sets from the book Generalized Linear Models with Examples in R by Dunn and Smyth.

Maintained by Peter K. Dunn. Last updated 3 years ago.

4.0 match 2.53 score 220 scripts

pik-piam

mrland:MadRaT land data package

The package provides land related data via the madrat framework.

Maintained by Jan Philipp Dietrich. Last updated 12 days ago.

1.8 match 5.59 score 3 scripts 4 dependents

janmarvin

nlsur:Estimating Nonlinear Least Squares for Equation Systems

"Estimation of Nonlinear Least Squares (NLS), Feasible Generalized NLS (FGNLS) and Iterative FGNLS (IFGNLS) for Equation Systems."

Maintained by Jan Marvin Garbuszus. Last updated 8 months ago.

equation-systems fgnls ifgnls nls seemingly-unrelated-regression openblas cpp

3.1 match 16 stars 3.20 score 8 scripts

ekstroem

isdals:Datasets for Introduction to Statistical Data Analysis for the Life Sciences

Provides datasets for the book "Introduction to Statistical Data Analysis for the Life Sciences, Second edition" by Ekstrøm and Sørensen (2014).

Maintained by Claus Ekstrom. Last updated 2 years ago.

4.0 match 2.51 score 108 scripts 1 dependents

conjugateprior

cbn:Tools and replication materials for Caliskan, Bryson, and Narayanan (2017)

This package allows users to replicate the analysis in the paper and also provides general purpose tools for working with a large word vector file and comparing groups of words with permutation statistics from the original paper. Alternative bootstrapped versions with confidence intervals are also available.

Maintained by Will Lowe. Last updated 6 years ago.

cpp

2.9 match 2 stars 3.48 score 6 scripts

mobreza

genesysr:Genesys PGR Client

Access data on plant genetic resources from genebanks around the world published on Genesys (<https://www.genesys-pgr.org>). Your use of data is subject to terms and conditions available at <https://www.genesys-pgr.org/content/legal/terms>.

Maintained by Matija Obreza. Last updated 1 years ago.

3.3 match 3.00 score 6 scripts

bioc

ELMER:Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

ELMER is designed to use DNA methylation and gene expression from a large number of samples to infere regulatory element landscape and transcription factor network in primary tissue.

Maintained by Tiago Chedraoui Silva. Last updated 5 months ago.

dnamethylation geneexpression motifannotation software generegulation transcription network

1.3 match 7.42 score 176 scripts

bioc

pathlinkR:Analyze and interpret RNA-Seq results

pathlinkR is an R package designed to facilitate analysis of RNA-Seq results. Specifically, our aim with pathlinkR was to provide a number of tools which take a list of DE genes and perform different analyses on them, aiding with the interpretation of results. Functions are included to perform pathway enrichment, with muliplte databases supported, and tools for visualizing these results. Genes can also be used to create and plot protein-protein interaction networks, all from inside of R.

Maintained by Travis Blimkie. Last updated 3 months ago.

genesetenrichment network pathways reactome rnaseq networkenrichment bioinformatics networks pathway-enrichment-analysis visualization

1.5 match 28 stars 6.59 score 2 scripts

doserjef

rFIA:Estimation of Forest Variables using the FIA Database

The goal of 'rFIA' is to increase the accessibility and use of the United States Forest Services (USFS) Forest Inventory and Analysis (FIA) Database by providing a user-friendly, open source toolkit to easily query and analyze FIA Data. Designed to accommodate a wide range of potential user objectives, 'rFIA' simplifies the estimation of forest variables from the FIA Database and allows all R users (experts and newcomers alike) to unlock the flexibility inherent to the Enhanced FIA design. Specifically, 'rFIA' improves accessibility to the spatial-temporal estimation capacity of the FIA Database by producing space-time indexed summaries of forest variables within user-defined population boundaries. Direct integration with other popular R packages (e.g., 'dplyr', 'tidyr', and 'sf') facilitates efficient space-time query and data summary, and supports common data representations and API design. The package implements design-based estimation procedures outlined by Bechtold & Patterson (2005) <doi:10.2737/SRS-GTR-80>, and has been validated against estimates and sampling errors produced by FIA 'EVALIDator'. Current development is focused on the implementation of spatially-enabled model-assisted and model-based estimators to improve population, change, and ratio estimates.

Maintained by Jeffrey Doser. Last updated 24 days ago.

compute-estimates fia fia-database fia-datamart forest-inventory forest-variables inventories space-time spatial

1.7 match 49 stars 5.93 score

eitsupi

neopolars:R Bindings for the 'polars' Rust Library

Lightning-fast 'DataFrame' library written in 'Rust'. Convert R data to 'Polars' data and vice versa. Perform fast, lazy, larger-than-memory and optimized data queries. 'Polars' is interoperable with the package 'arrow', as both are based on the 'Apache Arrow' Columnar Format.

Maintained by Tatsuya Shima. Last updated 21 hours ago.

rust cargo

2.0 match 43 stars 4.92 score 1 scripts

mikejohnson51

AOI:Areas of Interest

A consistent tool kit for forward and reverse geocoding and defining boundaries for spatial analysis.

Maintained by Mike Johnson. Last updated 1 years ago.

aoi area-of-interest bounding-boxes gis spatial subset

1.9 match 37 stars 4.98 score 174 scripts 1 dependents

ropensci

suppdata:Downloading Supplementary Data from Published Manuscripts

Downloads data supplementary materials from manuscripts, using papers' DOIs as references. Facilitates open, reproducible research workflows: scientists re-analyzing published datasets can work with them as easily as if they were stored on their own computer, and others can track their analysis workflow painlessly. The main function suppdata() returns a (temporary) location on the user's computer where the file is stored, making it simple to use suppdata() with standard functions like read.csv().

Maintained by William D. Pearse. Last updated 1 years ago.

peer-reviewed

2.4 match 34 stars 3.83 score 9 scripts

filzmoserp

StatDA:Statistical Analysis for Environmental Data

Statistical analysis methods for environmental data are implemented. There is a particular focus on robust methods, and on methods for compositional data. In addition, larger data sets from geochemistry are provided. The statistical methods are described in Reimann, Filzmoser, Garrett, Dutter (2008, ISBN:978-0-470-98581-6).

Maintained by Peter Filzmoser. Last updated 2 years ago.

3.6 match 2.45 score 141 scripts

gasparl

neatStats:Neat and Painless Statistical Reporting

User-friendly, clear and simple statistics, primarily for publication in psychological science. The main functions are wrappers for other packages, but there are various additions as well. Every relevant step from data aggregation to reportable printed statistics is covered for basic experimental designs.

Maintained by Gáspár Lukács. Last updated 2 years ago.

bayesfactor confidence-intervals pipeline statistical-analysis statistics

2.0 match 4 stars 4.30 score

cran

CLSIEP15:Clinical and Laboratory Standards Institute (CLSI) EP15-A3 Calculations

Calculations of "EP15-A3 document. A manual for user verification of precision and estimation of bias" CLSI (2014, ISBN:1-56238-966-1).

Maintained by Claucio Antonio Rank Filho. Last updated 1 years ago.

3.2 match 2.70 score

maikemorrison

FAVA:Quantify Compositional Variability Across Relative Abundance Vectors

Implements the statistic FAVA, an Fst-based Assessment of Variability across vectors of relative Abundances, as well as a suite of helper functions which enable the visualization and statistical analysis of relative abundance data. The 'FAVA' R package accompanies the paper, “Quantifying compositional variability in microbial communities with FAVA” by Morrison, Xue, and Rosenberg (2025) <doi:10.1073/pnas.2413211122>.

Maintained by Maike Morrison. Last updated 4 days ago.

1.5 match 6 stars 5.48 score 8 scripts

merliseclyde

BAS:Bayesian Variable Selection and Model Averaging using Bayesian Adaptive Sampling

Package for Bayesian Variable Selection and Model Averaging in linear models and generalized linear models using stochastic or deterministic sampling without replacement from posterior distributions. Prior distributions on coefficients are from Zellner's g-prior or mixtures of g-priors corresponding to the Zellner-Siow Cauchy Priors or the mixture of g-priors from Liang et al (2008) <DOI:10.1198/016214507000001337> for linear models or mixtures of g-priors from Li and Clyde (2019) <DOI:10.1080/01621459.2018.1469992> in generalized linear models. Other model selection criteria include AIC, BIC and Empirical Bayes estimates of g. Sampling probabilities may be updated based on the sampled models using sampling w/out replacement or an efficient MCMC algorithm which samples models using a tree structure of the model space as an efficient hash table. See Clyde, Ghosh and Littman (2010) <DOI:10.1198/jcgs.2010.09049> for details on the sampling algorithms. Uniform priors over all models or beta-binomial prior distributions on model size are allowed, and for large p truncated priors on the model space may be used to enforce sampling models that are full rank. The user may force variables to always be included in addition to imposing constraints that higher order interactions are included only if their parents are included in the model. This material is based upon work supported by the National Science Foundation under Division of Mathematical Sciences grant 1106891. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.

Maintained by Merlise Clyde. Last updated 4 months ago.

bayesian bayesian-inference generalized-linear-models linear-regression logistic-regression mcmc model-selection poisson-regression predictive-modeling regression variable-selection fortran openblas

0.8 match 44 stars 10.63 score 420 scripts 3 dependents

ktabelow

qMRI:Methods for Quantitative Magnetic Resonance Imaging ('qMRI')

Implementation of methods for estimation of quantitative maps from Multi-Parameter Mapping (MPM) acquisitions (Weiskopf et al. (2013) <doi:10.3389/fnins.2013.00095>) and analysis of Inversion Recovery MRI data. Usage of the package is described in Polzehl and Tabelow (2023), "Magnetic Resonance Brain Imaging", 2nd Edition, Chapter 6 and 7, Springer, Use R! Series. <doi:10.1007/978-3-031-38949-8>. J. Polzehl and K. Tabelow (2023), "Magnetic Resonance Brain Imaging - Modeling and Data Analysis Using R: Code and Data." <doi:10.20347/WIAS.DATA.6> provides extensive example code and data.

Maintained by Karsten Tabelow. Last updated 26 days ago.

fortran

1.7 match 4.81 score 36 scripts

cnathe

Rlabkey:Data Exchange Between R and 'LabKey' Server

The 'LabKey' client library for R makes it easy for R users to load live data from a 'LabKey' Server, <https://www.labkey.com/>, into the R environment for analysis, provided users have permissions to read the data. It also enables R users to insert, update, and delete records stored on a 'LabKey' Server, provided they have appropriate permissions to do so.

Maintained by Cory Nathe. Last updated 19 days ago.

cpp

1.9 match 4.25 score 388 scripts 1 dependents

inrae

airGRiwrm:'airGR' Integrated Water Resource Management

Semi-distributed Precipitation-Runoff Modeling based on 'airGR' package models integrating human infrastructures and their managements.

Maintained by David Dorchies. Last updated 6 months ago.

1.2 match 6.31 score 45 scripts

eriqande

gscramble:Simulating Admixed Genotypes Without Replacement

A genomic simulation approach for creating biologically informed individual genotypes from empirical data that 1) samples alleles from populations without replacement, 2) segregates alleles based on species-specific recombination rates. 'gscramble' is a flexible simulation approach that allows users to create pedigrees of varying complexity in order to simulate admixed genotypes. Furthermore, it allows users to track haplotype blocks from the source populations through the pedigrees.

Maintained by Eric C. Anderson. Last updated 1 years ago.

noaa-omics-software

1.7 match 4.35 score 15 scripts

mikemahoney218

mvdf:A Minimum Viable Data Format for 3D Rendering via Blender

A small, self-contained, minimum viable data format providing a standard interface for using R as a front-end for the Blender 3D rendering program. The core approach centers around an S4 class, 'mvdf', with getter, setter, and validation methods designed to be extended for more specific rendering approaches.

Maintained by Michael Mahoney. Last updated 4 years ago.

blender

1.7 match 16 stars 4.20 score 5 scripts

bioc

customCMPdb:Customize and Query Compound Annotation Database

This package serves as a query interface for important community collections of small molecules, while also allowing users to include custom compound collections.

Maintained by Yuzhu Duan. Last updated 5 months ago.

software cheminformatics annotationhubsoftware

1.5 match 2 stars 4.78 score 4 scripts

cotterell

TDCM:The Transition Diagnostic Classification Model Framework

Estimate the transition diagnostic classification model (TDCM) described in Madison & Bradshaw (2018) <doi:10.1007/s11336-018-9638-5>, a longitudinal extension of the log-linear cognitive diagnosis model (LCDM) in Henson, Templin & Willse (2009) <doi:10.1007/s11336-008-9089-5>. As the LCDM subsumes many other diagnostic classification models (DCMs), many other DCMs can be estimated longitudinally via the TDCM. The 'TDCM' package includes functions to estimate the single-group and multigroup TDCM, summarize results of interest including item parameters, growth proportions, transition probabilities, transitional reliability, attribute correlations, model fit, and growth plots.

Maintained by Michael E. Cotterell. Last updated 14 days ago.

statistics

1.5 match 4.60 score 5 scripts

frenchrh

klovan:Geostatistics Methods and Klovan Data

A comprehensive set of geostatistical, visual, and analytical methods, in conjunction with the expanded version of the acclaimed J.E. Klovan's mining dataset, are included in 'klovan'. This makes the package an excellent learning resource for Principal Component Analysis (PCA), Factor Analysis (FA), kriging, and other geostatistical techniques. Originally published in the 1976 book 'Geological Factor Analysis', the included mining dataset was assembled by Professor J. E. Klovan of the University of Calgary. Being one of the first applications of FA in the geosciences, this dataset has significant historical importance. As a well-regarded and published dataset, it is an excellent resource for demonstrating the capabilities of PCA, FA, kriging, and other geostatistical techniques in geosciences. For those interested in these methods, the 'klovan' datasets provide a valuable and illustrative resource. Note that some methods require the 'RGeostats' package. Please refer to the README or Additional_repositories for installation instructions. This material is based upon research in the Materials Data Science for Stockpile Stewardship Center of Excellence (MDS3-COE), and supported by the Department of Energy's National Nuclear Security Administration under Award Number DE-NA0004104.

Maintained by Roger H French. Last updated 1 years ago.

2.8 match 2.48 score

emptyfield-ds

shunyata:Deploy Empty Field Teaching Material

This package helps set up new teaching material and deploy courses based on the Empty Field teaching workflow.

Maintained by Malcolm Barrett. Last updated 1 years ago.

3.5 match 1 stars 1.70 score 2 scripts

cran

matman:Material Management

A set of functions, classes and methods for performing ABC and ABC/XYZ analyses, identifying overperforming, underperforming and constantly performing items, and plotting, analyzing as well as predicting the temporal development of items.

Maintained by Leon Binder. Last updated 3 years ago.

6.0 match 1.00 score

bioc

factR:Functional Annotation of Custom Transcriptomes

factR contain tools to process and interact with custom-assembled transcriptomes (GTF). At its core, factR constructs CDS information on custom transcripts and subsequently predicts its functional output. In addition, factR has tools capable of plotting transcripts, correcting chromosome and gene information and shortlisting new transcripts.

Maintained by Fursham Hamid. Last updated 5 months ago.

alternativesplicing functionalprediction geneprediction custom-transcriptomes functional-annotation gtf rna-seq-analysis

1.5 match 1 stars 4.00 score 5 scripts

cloudyr

aws.kms:'AWS Key Management Service' Client Package

Client package for the 'AWS Key Management Service' <https://aws.amazon.com/kms/>, a cloud service for managing encryption keys.

Maintained by Simon Urbanek. Last updated 5 years ago.

aws aws-kms cloudyr kms

1.8 match 3.18 score 7 scripts

jolars

rmdplugr:Plugins for R Markdown Formats

Formats for R Markdown that undo modifications by 'pandoc' and 'rmarkdown' to original 'latex' templates, such as smaller margins, paragraph spacing, and compact titles. In addition, enhancements such as author blocks with affiliations and headers and footers are introduced. All of this functionality is built around plugins that modify the default 'pandoc' template without relying on custom templates.

Maintained by Johan Larsson. Last updated 5 years ago.

1.5 match 3.70 score 1 scripts

thomasgstewart

tangram.pipe:Row-by-Row Table Building

Builds tables with customizable rows. Users can specify the type of data to use for each row, as well as how to handle missing data and the types of comparison tests to run on the table columns.

Maintained by Andrew Guide. Last updated 3 years ago.

1.5 match 1 stars 3.60 score 1 scripts

yili-hong

ADDT:Analysis of Accelerated Destructive Degradation Test Data

Accelerated destructive degradation tests (ADDT) are often used to collect necessary data for assessing the long-term properties of polymeric materials. Based on the collected data, a thermal index (TI) is estimated. The TI can be useful for material rating and comparison. This package implements the traditional method based on the least-squares method, the parametric method based on maximum likelihood estimation, and the semiparametric method based on spline methods, and the corresponding methods for estimating TI for polymeric materials. The traditional approach is a two-step approach that is currently used in industrial standards, while the parametric method is widely used in the statistical literature. The semiparametric method is newly developed. Both the parametric and semiparametric approaches allow one to do statistical inference such as quantifying uncertainties in estimation, hypothesis testing, and predictions. Publicly available datasets are provided illustrations. More details can be found in Jin et al. (2017).

Maintained by Yili Hong. Last updated 8 years ago.

5.4 match 1.00 score 2 scripts

ropensci

osfr:Interface to the 'Open Science Framework' ('OSF')

An interface for interacting with 'OSF' (<https://osf.io>). 'osfr' enables you to access open research materials and data, or create and manage your own private or public projects.

Maintained by Aaron Wolen. Last updated 9 months ago.

open-science osf reproducible-research

0.5 match 145 stars 10.18 score 588 scripts 3 dependents

assaforon

upndown:Utilities and Design Aids for Up-and-Down Dose-Finding Studies

Up-and-Down (UD) is the most popular design approach for dose-finding, but it has been severely under-served by the statistical and computing communities. This is the first package to address UD's needs. Recent applied UD tutorial: Oron et al., 2022 <doi:10.1097/ALN.0000000000004282>. Recent methodological overview: Oron and Flournoy, 2024 <doi:10.51387/24-NEJSDS74>.

Maintained by Assaf P. Oron. Last updated 23 days ago.

1.3 match 3.95 score 15 scripts

jisunjang19

JSDNE:Estimating the Age using Auricular Surface by DNE

The age is estimated by calculating the Dirichlet Normal Energy (DNE) on the whole auricular surface and the apex of the auricular surface. It involves three estimation methods: principal component discriminant analysis (PCQDA), principal component regression analysis (PCR), and principal component logistic regression analysis (PCLR) methods. The package is created with the data from the Louis Lopes Collection in Lisbon, the 21st Century Identified Human Remains Collection in Coimbra, and the CAL Milano Cemetery Skeletal Collection in Milan.

Maintained by Jisun Jang. Last updated 7 months ago.

2.0 match 2.48 score 3 scripts

umich-biostatistics

SynDI:Synthetic Data Integration

Regression inference for multiple populations by integrating summary-level data using stacked imputations. Gu, T., Taylor, J.M.G. and Mukherjee, B. (2021) A synthetic data integration framework to leverage external summary-level information from heterogeneous populations <arXiv:2106.06835>.

Maintained by Michael Kleinsasser. Last updated 3 years ago.

1.1 match 2 stars 4.30 score 7 scripts

qpsy

nonnest2:Tests of Non-Nested Models

Testing non-nested models via theory supplied by Vuong (1989) <DOI:10.2307/1912557>. Includes tests of model distinguishability and of model fit that can be applied to both nested and non-nested models. Also includes functionality to obtain confidence intervals associated with AIC and BIC. This material is partially based on work supported by the National Science Foundation under Grant Number SES-1061334.

Maintained by Edgar Merkle. Last updated 7 months ago.

0.5 match 6 stars 9.09 score 35 scripts 8 dependents

1802515849

TTS:Master Curve Estimates Corresponding to Time-Temperature Superposition

Time-Temperature Superposition analysis is often applied to frequency modulated data obtained by Dynamic Mechanic Analysis (DMA) and Rheometry in the analytical chemistry and physics areas. These techniques provide estimates of material mechanical properties (such as moduli) at different temperatures in a wider range of time. This package provides the Time-Temperature superposition Master Curve at a referred temperature by the three methods: the two wider used methods, Arrhenius based methods and WLF, and the newer methodology based on derivatives procedure. The Master Curve is smoothed by B-splines basis. The package output is composed of plots of experimental data, horizontal and vertical shifts, TTS data, and TTS data fitted using B-splines with bootstrap confidence intervals.

Maintained by Antonio Meneses. Last updated 2 years ago.

2.2 match 2.00 score 11 scripts

cran

HMMRel:Hidden Markov Models for Reliability and Maintenance

Reliability Analysis and Maintenance Optimization using Hidden Markov Models (HMM). The use of HMMs to model the state of a system which is not directly observable and instead certain indicators (signals) of the true situation are provided via a control system. A hidden model can provide key information about the system dependability, such as the reliability of the system and related measures. An estimation procedure is implemented based on the Baum-Welch algorithm. Classical structures such as K-out-of-N systems and Shock models are illustrated. Finally, the maintenance of the system is considered in the HMM context and two functions for new preventive maintenance strategies are considered. Maintenance efficiency is measured in terms of expected cost. Methods are described in Gamiz, Limnios, and Segovia-Garcia (2023) <doi:10.1016/j.ejor.2022.05.006>.

Maintained by M.L. Gamiz. Last updated 4 months ago.

3.3 match 1.30 score

framverse

pssp:Package to interface with the WDFW Puget Sound sampling database

The pssp package serves as an interface between R and the Puget Sound sampling database. It"s goal is to ease the burden of retrieving and analyzing sport creel information in Puget Sound.

Maintained by Ty Garber. Last updated 4 months ago.

1.8 match 2.40 score

cran

EngrExpt:Data sets from "Introductory Statistics for Engineering Experimentation"

Datasets from Nelson, Coffin and Copeland "Introductory Statistics for Engineering Experimentation" (Elsevier, 2003) with sample code.

Maintained by Douglas Bates. Last updated 16 years ago.

4.0 match 1.00 score

bhramdath

FEA:Finite Element Modeling for R

Finite element modeling of beam structures and 2D geometries using constant strain triangles. Applies material properties and boundary conditions (load and constraint) to generate a finite element model. The model produces stress, strain, and nodal displacements; a heat map is available to demonstrate regions where output variables are high or low. Also provides options for creating a triangular mesh of 2D geometries. Package developed with reference to: Bathe, K. J. (1996). Finite Element Procedures.[ISBN 978-0-9790049-5-7] -- Seshu, P. (2012). Textbook of Finite Element Analysis. [ISBN-978-81-203-2315-5] -- Mustapha, K. B. (2018). Finite Element Computations in Mechanics with R. [ISBN 9781315144474].

Maintained by Henna D. Bhramdat. Last updated 2 years ago.

3.8 match 1.00 score

cran

mdscore:Improved Score Tests for Generalized Linear Models

A set of functions to obtain modified score test for generalized linear models.

Maintained by Antonio Hermes M. da Silva-Junior. Last updated 8 years ago.

3.8 match 1.00 score

matthewlavallee

hsr716:Course Materials for Advanced Health Service Research Methods

A (one paragraph) description of what the package does and why it may be useful.

Maintained by Matthew Lavallee. Last updated 4 months ago.

2.9 match 1.30 score

fgashakamba

hypsoLoop:A Tool Used to Conduct Hypsometric Analysis of a Watershed

Functions for generating tables required for drawing and calculating hypsometric curves and hypsometric integrals. These functions accept as input the DEM of the region of interest (your watershed) and a spatial data frame file specifying delineation of sub-catchments within the watershed. They then generate output in the form of PNG images and HTML files contained in a folder named "HYPSO_OUTPUT" created in the current directory. S. K. Sharma, S. Gajbhiye, et al. (2018) <doi:10.1007/978-981-10-5801-1_19>. Omvir Singh, A. Sarangi, and Milap C. Sharma (2006) <doi:10.1007/s11269-008-9242-z>. James A. Vanderwaal and Herbert Ssegane (2013) <doi:10.1111/jawr.12089>.

Maintained by Faustin GASHAKAMBA. Last updated 3 years ago.

1.3 match 1 stars 2.70 score 2 scripts

kjhealy

socviz:Utility Functions and Data Sets for Data Visualization

Supporting materials for a course and book on data visualization. It contains utility functions for graphs and several sample data sets. See Healy (2019) <ISBN 978-0691181622>.

Maintained by Kieran Healy. Last updated 5 years ago.

0.5 match 190 stars 6.82 score 628 scripts

m-signo

neat:Efficient Network Enrichment Analysis Test

Includes functions and examples to compute NEAT, the Network Enrichment Analysis Test described in Signorelli et al. (2016, <DOI:10.1186/s12859-016-1203-6>).

Maintained by Mirko Signorelli. Last updated 1 years ago.

1.5 match 2.34 score 22 scripts

cran

thermocouple:Temperature Measurement with Thermocouples, RTD and IC Sensors

Temperature measurement data, equations and methods for thermocouples, wire RTD, thermistors, IC thermometers, bimetallic strips and the ITS-90.

Maintained by Jose Gama. Last updated 10 years ago.

3.5 match 1.00 score

willzywiec

criticality:Modeling Fissile Material Operations in Nuclear Facilities

A collection of functions for modeling fissile material operations in nuclear facilities, based on Zywiec et al (2021) <doi:10.1016/j.ress.2020.107322>.

Maintained by William Zywiec. Last updated 2 years ago.

3.4 match 1.00 score

agricolamz

checkdown:Check-Fields and Check-Boxes for 'rmarkdown'

Creates auto-grading check-fields and check-boxes for 'rmarkdown' or 'quarto' HTML. It can be used in class, when teacher share materials and tasks, so students can solve some problems and check their work. In contrast to the 'learnr' package, the 'checkdown' package works serverlessly without 'shiny'.

Maintained by George Moroz. Last updated 1 years ago.

autocheck rmarkdown teaching

0.5 match 31 stars 6.61 score 262 scripts

z267xu

ggmulti:High Dimensional Data Visualization

It provides materials (i.e. 'serial axes' objects, Andrew's plot, various glyphs for scatter plot) to visualize high dimensional data.

Maintained by Zehao Xu. Last updated 2 years ago.

0.5 match 6.11 score 36 scripts 4 dependents

m-signo

ptmixed:Poisson-Tweedie Generalized Linear Mixed Model

Fits the Poisson-Tweedie generalized linear mixed model described in Signorelli et al. (2021, <doi:10.1177/1471082X20936017>). Likelihood approximation based on adaptive Gauss Hermite quadrature rule.

Maintained by Mirko Signorelli. Last updated 3 years ago.

1.5 match 2.15 score 14 scripts

ropensci

pkgreviewr:rOpenSci package review project template

Creates files and collects materials necessary to complete an rOpenSci package review. Review files are prepopulated with review package specific metadata. Review package source code is also cloned for local testing and inspection.

Maintained by Maëlle Salmon. Last updated 1 months ago.

review ropensci ropensci-reviews unconf unconf18

0.5 match 37 stars 5.97 score 28 scripts

nctingwang

merDeriv:Case-Wise and Cluster-Wise Derivatives for Mixed Effects Models

Compute case-wise and cluster-wise derivative for mixed effects models with respect to fixed effects parameter, random effect (co)variances, and residual variance. This material is partially based on work supported by the National Science Foundation under Grant Number 1460719.

Maintained by Ting Wang. Last updated 3 days ago.

0.5 match 5 stars 5.77 score 71 scripts 2 dependents

arthurgailes

overtureR:Load 'Overture' Datasets as 'dbplyr' and 'sf'-Ready Data Frames

An integrated R interface to the 'Overture' API (<https://docs.overturemaps.org/>). Allows R users to return 'Overture' data as 'dbplyr' data frames or materialized 'sf' spatial data frames.

Maintained by Arthur Gailes. Last updated 4 months ago.

0.5 match 14 stars 5.69 score 7 scripts

taylor-arnold

sotu:United States Presidential State of the Union Addresses

The President of the United States is constitutionally obligated to provide a report known as the 'State of the Union'. The report summarizes the current challenges facing the country and the president's upcoming legislative agenda. While historically the State of the Union was often a written document, in recent decades it has always taken the form of an oral address to a joint session of the United States Congress. This package provides the raw text from every such address with the intention of being used for meaningful examples of text analysis in R. The corpus is well suited to the task as it is historically important, includes material intended to be read and material intended to be spoken, and it falls in the public domain. As the corpus spans over two centuries it is also a good test of how well various methods hold up to the idiosyncrasies of historical texts. Associated data about each address, such as the year, president, party, and format, are also included.

Maintained by Taylor B. Arnold. Last updated 3 years ago.

0.8 match 2 stars 3.87 score 74 scripts

mbtyers

jagshelper:Extracting and Visualizing Output from 'jagsUI'

Tools are provided to streamline Bayesian analyses in 'JAGS' using the 'jagsUI' package. Included are functions for extracting output in simpler format, functions for streamlining assessment of convergence, and functions for producing summary plots of output. Also included is a function that provides a simple template for running 'JAGS' from 'R'. Referenced materials can be found at <DOI:10.1214/ss/1177011136>.

Maintained by Matt Tyers. Last updated 5 months ago.

jags cpp

0.5 match 5.74 score 91 scripts

cran

MaximinInfer:Inference for Maximin Effects in High-Dimensional Settings

Implementation of the sampling and aggregation method for the covariate shift maximin effect, which was proposed in <arXiv:2011.07568>. It constructs the confidence interval for any linear combination of the high-dimensional maximin effect.

Maintained by Zhenyu Wang. Last updated 2 years ago.

1.7 match 1.70 score

wiiison

onmaRg:Import Public Health Ontario's Ontario Marginalization Index

The Ontario Marginalization Index is a socioeconomic model that is built on Statistics Canada census data. The model consists of four dimensions: In 2021, these dimensions were updated to "Material Resources" (previously called "Material Deprivation"), "Households and Dwellings" (previously called "Residential Instability"), "Age and Labour Force" (previously called "Dependency"), and "Racialized and Newcomer Populations" (previously called "Ethnic Concentration"). This update reflects a movement away from deficit-based language. 2021 data will load with these new dimension names, wheras 2011 and 2016 data will load with the historical dimension names. Each of these dimensions are imported for a variety of geographic levels (DA, CD, etc.) for the 2021, 2011 and 2016 administrations of the census. These data sets contribute to community analysis of equity with respect to Ontario's Anti-Racism Act. The Ontario Marginalization Index data is retrieved from the Public Health Ontario website: <https://www.publichealthontario.ca/en/data-and-analysis/health-equity/ontario-marginalization-index>. The shapefile data is retrieved from the Statistics Canada website: <https://www12.statcan.gc.ca/census-recensement/2011/geo/bound-limit/bound-limit-eng.cfm>.

Maintained by William Conley. Last updated 6 months ago.

health onmarg socioeconomic-indicators

0.8 match 3.70 score 7 scripts

hypertidy

vaster:Tools for Raster Grid Logic

Provides raster grid logic, the grid operations that don't require access to materialized data, i.e. most of them. Grids are arrays with dimension and extent, and many operations are functions of just the dimension 'nrows', 'ncols' or a combination of the dimension and the extent 'xmin', 'xmax', 'ymin', 'ymax'. Here we provide direct access to this logic without need for connection to any materialized data or formats. Grid logic includes functions that relate the cell index to row and column, or row and column to cell index, row, column or cell index to position. Cell index, and row,column posiiton exist independently of any other use of a raster grid.

Maintained by Michael Sumner. Last updated 11 months ago.

raster

0.8 match 7 stars 3.62 score 9 scripts 2 dependents

japhir

snvecR:Calculate Earth’s Obliquity and Precession in the Past

Easily calculate precession and obliquity from an orbital solution (defaults to ZB18a from Zeebe and Lourens (2019) <doi:10.1126/science.aax0612>) and assumed or reconstructed values for dynamical ellipticity (Ed) and tidal dissipation (Td). This is a translation and adaptation of the 'C'-code in the supplementary material to Zeebe and Lourens (2022) <doi:10.1029/2021PA004349>, with further details on the methodology described in Zeebe (2022) <doi:10.3847/1538-3881/ac80f8>. The name of the 'C'-routine is 'snvec', which refers to the key units of computation: spin vector s and orbit normal vector n.

Maintained by Ilja Kocken. Last updated 22 days ago.

0.5 match 4 stars 5.51 score 4 scripts

jhmaindonald

tTOlr:Likelihood Ratio Statistics for One or Two Sample T-Tests

Likelihood ratio and maximum likelihood statistics are provided that can be used as alternatives to p-values Colquhoun (2017) <doi:10.1098/rsos.171085>. Arguments can be either p-values or t-statistics. together with degrees of freedom. For the function 'tTOlr', the argument 'twoSided' has the default 'twoSided = TRUE'.

Maintained by John Maindonald. Last updated 2 years ago.

1.2 match 2.30 score 2 scripts

jsjuni

rollupTree:Perform Recursive Computations

Mass rollup for a Bill of Materials is an example of a class of computations in which elements are arranged in a tree structure and some property of each element is a computed function of the corresponding values of its child elements. Leaf elements, i.e., those with no children, have values assigned. In many cases, the combining function is simple arithmetic sum; in other cases (e.g., mass properties), the combiner may involve other information such as the geometric relationship between parent and child, or statistical relations such as root-sum-of-squares (RSS). This package implements a general function for such problems. It is adapted to specific recursive computations by functional programming techniques; the caller passes a function as the update parameter to rollup() (or, at a lower level, passes functions as the get, set, combine, and override parameters to update_prop()) at runtime to specify the desired operations. The implementation relies on graph-theoretic algorithms from the 'igraph' package of Csárdi, et al. (2006 <doi:10.5281/zenodo.7682609>).

Maintained by James Steven Jenkins. Last updated 1 days ago.

0.5 match 2 stars 5.38 score 1 dependents

surveygraph

surveygraph:Network Representations of Attitudes

A tool for computing network representations of attitudes, extracted from tabular data such as sociological surveys. Development of surveygraph software and training materials was initially funded by the European Union under the ERC Proof-of-concept programme (ERC, Attitude-Maps-4-All, project number: 101069264). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council Executive Agency. Neither the European Union nor the granting authority can be held responsible for them.

Maintained by Samuel Unicomb. Last updated 4 months ago.

cpp

0.5 match 1 stars 5.30 score 6 scripts

kriper0217

valmetrics:Metrics and Plots for Model Evaluation

Functions for metrics and plots for model evaluation. Based on vectors of observed and predicted values. Method: Kristin Piikki, Johanna Wetterlind, Mats Soderstrom and Bo Stenberg (2021). <doi:10.1111/SUM.12694>.

Maintained by Kristin Piikki. Last updated 4 years ago.

1.3 match 2.00 score 2 scripts

guifabre

fabR:Wrapper Functions Collection Used in Data Pipelines

The goal of this package is to provide wrapper functions in the data cleaning and cleansing processes. These function helps in messages and interaction with the user, keep track of information in pipelines, help in the wrangling, munging, assessment and visualization of data frame-like material.

Maintained by Guillaume Fabre. Last updated 11 months ago.

0.5 match 1 stars 5.14 score 23 scripts 4 dependents

hypertidy

anglr:Mesh Topology and Visualization for Spatial Data

Gives direct access to generic 3D tools and provides a full suite of mesh-creation and 3D plotting functions. By extending the 'rgl' package conversion and visualization functions for the 'mesh3d' class a wide variety of complex spatial data can be brought into 3D scenes. These tools allow for spatial raster, polygons, and lines that are common in 'GIS' contexts to be converted into mesh forms with high flexibility and the ability to integrate disparate data types. Vector and raster data can be seamlessly combined as meshes, and surfaces can be set to have material properties based on data values or with image textures. Textures and other data combinations use projection transformations to map between coordinate systems, and objects can be easily visualized in an interactive scene at any stage. This package relies on the 'RTriangle' package for high-quality triangular meshing which is licensed restrictively under 'CC BY-NC-SA 4.0'.

Maintained by Michael D. Sumner. Last updated 2 years ago.

0.5 match 82 stars 5.09 score 99 scripts

traitecoevo

litterfitter:Fit a Collection of Curves to Single Cohort Decomposition Data

There is a long tradition of studying the flux of carbon from the biosphere to the atmosphere by following a particular cohort of litter (wood, leaves, roots, or other organic material) through time. The resulting data are mass remaining and time. A variety of functional forms may be used to fit the resulting data. Some work better empirically. Some are better connected to a process-based understanding. Some have a small number of free parameters; others have more. This package matches decomposition data to a family of these curves using likelihood--based fitting. This package is based on published research by Cornwell & Weedon (2013) <doi:10.1111/2041-210X.12138>.

Maintained by Will Cornwell. Last updated 2 years ago.

0.5 match 5 stars 5.05 score 15 scripts

r-lum

RLumCarlo:Monte-Carlo Methods for Simulating Luminescence Phenomena

A collection of functions to simulate luminescence production in dosimetric materials using Monte Carlo methods. Implemented are models for delocalised transitions (e.g., Chen and McKeever (1997) <doi:10.1142/2781>), localised transitions (e.g., Pagonis et al. (2019) <doi:10.1016/j.jlumin.2018.11.024>) and tunnelling transitions (Jain et al. (2012) <doi:10.1088/0953-8984/24/38/385402> and Pagonis et al. (2019) <doi:10.1016/j.jlumin.2018.11.024>). Supported stimulation methods are thermal luminescence (TL), continuous-wave optically stimulated luminescence (CW-OSL), linearly-modulated optically stimulated luminescence (LM-OSL), linearly-modulated infrared stimulated luminescence (LM-IRSL), and isothermal luminescence (ITL or ISO-TL).

Maintained by Sebastian Kreutzer. Last updated 9 months ago.

feldspar geochronology luminescence luminescence-models monte-carlo-simulations simulation cpp

0.5 match 3 stars 4.95 score 5 scripts

marjoleinbruijning

trackdem:Particle Tracking and Demography

Obtain population density and body size structure, using video material or image sequences as input. Functions assist in the creation of image sequences from videos, background detection and subtraction, particle identification and tracking. An artificial neural network can be trained for noise filtering. The goal is to supply accurate estimates of population size, structure and/or individual behavior, for use in evolutionary and ecological studies.

Maintained by Marjolein Bruijning. Last updated 4 years ago.

cpp

0.5 match 10 stars 4.88 score 15 scripts

dcgerard

segtest:Tests for Segregation Distortion in Polyploids

Provides a suite of tests for segregation distortion in F1 polyploid populations (for now, just tetraploids). This is under different assumptions of meiosis. Details of these methods are described in Gerard et al. (2025) <doi:10.1007/s00122-025-04816-z>. This material is based upon work supported by the National Science Foundation under Grant No. 2132247. The opinions, findings, and conclusions or recommendations expressed are those of the author and do not necessarily reflect the views of the National Science Foundation.

Maintained by David Gerard. Last updated 3 months ago.

cpp

0.5 match 1 stars 4.85 score 3 scripts

nmfs-ost

satf:Stock Assessment Tables and Figures

Creates exploratory and finished tables and figures for stock assessment documents from U.S. stock assessment model outputs. This packages addresses parts of the stock assessment workflow that interprets outputs of stock assessment models as well as allows the analyst to create report ready tables and figures, reducing the need to create their own and format then when adding into a report. This package is intended to be used in conjuction with `asar`, a partially automated template for writing various stock assessment reports. Throughout development, we will be creating a set of standardized figures and tables for a stock assessment report, developing functions to produce a variety of diagonostic plots, and other helpful materials. The advantage of using this package over others is that it applies to a range of stock assessment model outputs and standardizes them.

Maintained by Samantha Schiano. Last updated 2 months ago.

0.5 match 2 stars 4.88 score 5 scripts

jmhewitt

telefit:Estimation and Prediction for Remote Effects Spatial Process Models

Implementation of the remote effects spatial process (RESP) model for teleconnection. The RESP model is a geostatistical model that allows a spatially-referenced variable (like average precipitation) to be influenced by covariates defined on a remote domain (like sea surface temperatures). The RESP model is introduced in Hewitt et al. (2018) <doi:10.1002/env.2523>. Sample code for working with the RESP model is available at <https://jmhewitt.github.io/research/resp_example>. This material is based upon work supported by the National Science Foundation under grant number AGS 1419558. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the authors and do not necessarily reflect the views of the National Science Foundation.

Maintained by Joshua Hewitt. Last updated 5 years ago.

openblas cpp

0.8 match 1 stars 3.19 score 31 scripts

bioc

consensus:Cross-platform consensus analysis of genomic measurements via interlaboratory testing method

An implementation of the American Society for Testing and Materials (ASTM) Standard E691 for interlaboratory testing procedures, designed for cross-platform genomic measurements. Given three (3) or more genomic platforms or laboratory protocols, this package provides interlaboratory testing procedures giving per-locus comparisons for sensitivity and precision between platforms.

Maintained by Tim Peters. Last updated 5 months ago.

qualitycontrol regression datarepresentation geneexpression microarray rnaseq

0.5 match 4.70 score 10 scripts

hypertidy

controlledburn:Rasterize Index

Rasterize without materializing any pixel values. Rasterization of polygons starts with classifying pixels by polygon, and in terms of scanline algorithms this is natively stored very efficiently as an index of start and stops of edges by scanline. We produce these intermediate structures, so they can be used as an efficient format of polygon rasterization, or for the complement of this, data extraction from materialized rasters. This package was derived from 'fasterize', removing Armadillo and the raster package.

Maintained by Michael Sumner. Last updated 1 years ago.

compression lazy polygons raster cpp

0.8 match 11 stars 3.04 score 2 scripts

dcgerard

hwep:Hardy-Weinberg Equilibrium in Polyploids

Inference concerning equilibrium and random mating in autopolyploids. Methods are available to test for equilibrium and random mating at any even ploidy level (>2) in the presence of double reduction at biallelic loci. For autopolyploid populations in equilibrium, methods are available to estimate the degree of double reduction. We also provide functions to calculate genotype frequencies at equilibrium, or after one or several rounds of random mating, given rates of double reduction. The main function is hwefit(). This material is based upon work supported by the National Science Foundation under Grant No. 2132247. The opinions, findings, and conclusions or recommendations expressed are those of the author and do not necessarily reflect the views of the National Science Foundation. For details of these methods, see Gerard (2023a) <doi:10.1111/biom.13722> and Gerard (2023b) <doi:10.1111/1755-0998.13856>.

Maintained by David Gerard. Last updated 2 years ago.

cpp

0.5 match 3 stars 4.72 score 35 scripts

davidcarayon

IDEATools:Individual and Group Farm Sustainability Assessments using the IDEA4 Method

Collection of tools to automate the processing of data collected though the IDEA4 method (see Zahm et al. (2018) <doi:10.1051/cagri/2019004> ). Starting from the original data collecting files this packages provides functions to compute IDEA indicators, draw modern and aesthetic plots, and produce a wide range of reporting materials.

Maintained by David Carayon. Last updated 10 months ago.

0.5 match 1 stars 4.59 score 26 scripts

tbep-tech

peptools:Analysis Tools for Importing, Wrangling, and Summarizing Suffolk County Water Quality Data

Analysis tools for importing, wrangling, and summarizing Suffolk County water quality data. Functions are used to create reporting materials.

Maintained by Marcus Beck. Last updated 1 years ago.

data-analysis pep water-quality

0.5 match 4.33 score 54 scripts

josempozo

zoolog:Zooarchaeological Analysis with Log-Ratios

Includes functions and reference data to generate and manipulate log-ratios (also known as log size index (LSI) values) from measurements obtained on zooarchaeological material. Log ratios are used to compare the relative (rather than the absolute) dimensions of animals from archaeological contexts (Meadow 1999, ISBN: 9783896463883). zoolog is also able to seamlessly integrate data and references with heterogeneous nomenclature, which is internally managed by a zoolog thesaurus. A preliminary version of the zoolog methods was first used by Trentacoste, Nieto-Espinet, and Valenzuela-Lamas (2018) <doi:10.1371/journal.pone.0208109>.

Maintained by Jose M Pozo. Last updated 3 years ago.

0.5 match 6 stars 4.48 score 4 scripts

raim

segmenTier:Similarity-Based Segmentation of Multidimensional Signals

A dynamic programming solution to segmentation based on maximization of arbitrary similarity measures within segments. The general idea, theory and this implementation are described in Machne, Murray & Stadler (2017) <doi:10.1038/s41598-017-12401-8>. In addition to the core algorithm, the package provides time-series processing and clustering functions as described in the publication. These are generally applicable where a `k-means` clustering yields meaningful results, and have been specifically developed for clustering of the Discrete Fourier Transform of periodic gene expression data (`circadian' or `yeast metabolic oscillations'). This clustering approach is outlined in the supplemental material of Machne & Murray (2012) <doi:10.1371/journal.pone.0037906>), and here is used as a basis of segment similarity measures. Notably, the time-series processing and clustering functions can also be used as stand-alone tools, independent of segmentation, e.g., for transcriptome data already mapped to genes.

Maintained by Rainer Machne. Last updated 4 years ago.

cpp

0.5 match 3 stars 4.48 score 8 scripts

aalfons

r2spss:Format R Output to Look Like SPSS

Create plots and LaTeX tables that look like SPSS output for use in teaching materials. Rather than copying-and-pasting SPSS output into documents, R code that mocks up SPSS output can be integrated directly into dynamic LaTeX documents with tools such as knitr. Functionality includes statistical techniques that are typically covered in introductory statistics classes: descriptive statistics, common hypothesis tests, ANOVA, and linear regression, as well as box plots, histograms, scatter plots, and line plots (including profile plots).

Maintained by Andreas Alfons. Last updated 3 years ago.

0.5 match 3 stars 4.18 score 1 scripts

marce10

sketchy:Create Custom Research Compendiums

Provides functions to create and manage research compendiums for data analysis. Research compendiums are a standard and intuitive folder structure for organizing the digital materials of a research project, which can significantly improve reproducibility. The package offers several compendium structure options that fit different research project as well as the ability of duplicating the folder structure of existing projects or implementing custom structures. It also simplifies the use of version control.

Maintained by Marcelo Araya-Salas. Last updated 4 months ago.

compendium research

0.5 match 3 stars 4.16 score 12 scripts

paulnorthrop

r2stl:Visualizing Data using a 3D Printer

Converts data to STL (stereolithography) files that can be used to feed a 3-dimensional printer. The 3-dimensional output from a function can be materialized into a solid surface in a plastic material, therefore allowing more detailed examination. There are many possible uses for this new tool, such as to examine mathematical expressions with very irregular shapes, to aid teaching people with impaired vision, to create raised relief maps from digital elevation maps (DEMs), to bridge the gap between mathematical tools and rapid prototyping, and many more. Ian Walker created the function r2stl() and Jose' Gama assembled the package.

Maintained by Paul J. Northrop. Last updated 1 years ago.

0.8 match 1 stars 2.70 score 9 scripts

jasdumas

ttbbeer:US Beer Statistics from TTB

U.S. Department of the Treasury, Alcohol and Tobacco Tax and Trade Bureau (TTB) collects data and reports on monthly beer industry production and operations. This data package includes a collection of 10 years (2006 - 2015) worth of data on materials used at U.S. breweries in pounds reported by the Brewer's Report of Operations and the Quarterly Brewer's Report of Operations forms, ready for data analysis. This package also includes historical tax rates on distilled spirits, wine, beer, champagne, and tobacco products as individual data sets.

Maintained by Jasmine Dumas. Last updated 8 months ago.

beer-statistics data-analysis

0.5 match 23 stars 4.06 score 10 scripts

mrc-ide

beers:Calculate Beers Ordinary Interpolation

Calculate Beers Interpolation (both Ordinary and Modified method); a six-term formula which minimizes the fifth differences of the interpolated results. See p877 of The Methods and Materials of Demography, Volume 2, referring to Beers, The Record of the American Institute of Actuaries, 34, Part I (69):59-60, June 1945.

Maintained by Wes Hinsley. Last updated 4 years ago.

demography interpolation subdivision

0.5 match 2 stars 3.95 score 5 scripts 3 dependents

bioc

GenProSeq:Generating Protein Sequences with Deep Generative Models

Generative modeling for protein engineering is key to solving fundamental problems in synthetic biology, medicine, and material science. Machine learning has enabled us to generate useful protein sequences on a variety of scales. Generative models are machine learning methods which seek to model the distribution underlying the data, allowing for the generation of novel samples with similar properties to those on which the model was trained. Generative models of proteins can learn biologically meaningful representations helpful for a variety of downstream tasks. Furthermore, they can learn to generate protein sequences that have not been observed before and to assign higher probability to protein sequences that satisfy desired criteria. In this package, common deep generative models for protein sequences, such as variational autoencoder (VAE), generative adversarial networks (GAN), and autoregressive models are available. In the VAE and GAN, the Word2vec is used for embedding. The transformer encoder is applied to protein sequences for the autoregressive model.

Maintained by Dongmin Jung. Last updated 5 months ago.

software proteomics openjdk

0.5 match 4.00 score 3 scripts

fayetteklaassen

BayesianPower:Sample Size and Power for Comparing Inequality Constrained Hypotheses

A collection of methods to determine the required sample size for the evaluation of inequality constrained hypotheses by means of a Bayes factor. Alternatively, for a given sample size, the unconditional error probabilities or the expected conditional error probabilities can be determined. Additional material on the methods in this package is available in Klaassen, F., Hoijtink, H. & Gu, X. (2019) <doi:10.31219/osf.io/d5kf3>.

Maintained by Fayette Klaassen. Last updated 5 years ago.

0.5 match 3.70 score 2 scripts

cran

optiSel:Optimum Contribution Selection and Population Genetics

A framework for the optimization of breeding programs via optimum contribution selection and mate allocation. An easy to use set of function for computation of optimum contributions of selection candidates, and of the population genetic parameters to be optimized. These parameters can be estimated using pedigree or genotype information, and include kinships, kinships at native haplotype segments, and breed composition of crossbred individuals. They are suitable for managing genetic diversity, removing introgressed genetic material, and accelerating genetic gain. Additionally, functions are provided for computing genetic contributions from ancestors, inbreeding coefficients, the native effective size, the native genome equivalent, pedigree completeness, and for preparing and plotting pedigrees. The methods are described in:\n Wellmann, R., and Pfeiffer, I. (2009) <doi:10.1017/S0016672309000202>.\n Wellmann, R., and Bennewitz, J. (2011) <doi:10.2527/jas.2010-3709>.\n Wellmann, R., Hartwig, S., Bennewitz, J. (2012) <doi:10.1186/1297-9686-44-34>.\n de Cara, M. A. R., Villanueva, B., Toro, M. A., Fernandez, J. (2013) <doi:10.1111/mec.12560>.\n Wellmann, R., Bennewitz, J., Meuwissen, T.H.E. (2014) <doi:10.1017/S0016672314000196>.\n Wellmann, R. (2019) <doi:10.1186/s12859-018-2450-5>.

Maintained by Robin Wellmann. Last updated 9 months ago.

cpp

0.5 match 1 stars 3.62 score

meganmorbitzer

ddiv:Data Driven I-v Feature Extraction

The Data Driven I-V Feature Extraction is used to extract Current-Voltage (I-V) features from I-V curves. I-V curves indicate the relationship between current and voltage for a solar cell or Photovoltaic (PV) modules. The I-V features such as maximum power point (Pmp), shunt resistance (Rsh), series resistance (Rs),short circuit current (Isc), open circuit voltage (Voc), fill factor (FF), current at maximum power (Imp) and voltage at maximum power(Vmp) contain important information of the performance for PV modules. The traditional method uses the single diode model to model I-V curves and extract I-V features. This package does not use the diode model, but uses data-driven a method which select different linear parts of the I-V curves to extract I-V features. This method also uses a sampling method to calculate uncertainties when extracting I-V features. Also, because of the partially shaded array, "steps" occurs in I-V curves. The "Segmented Regression" method is used to identify steps in I-V curves. This material is based upon work supported by the U.S. Department of Energy’s Office of Energy Efficiency and Renewable Energy (EERE) under Solar Energy Technologies Office (SETO) Agreement Number DE-EE0007140. Further information can be found in the following paper. [1] Ma, X. et al, 2019. <doi:10.1109/JPHOTOV.2019.2928477>.

Maintained by Megan M. Morbitzer. Last updated 4 years ago.

0.5 match 3.62 score 23 scripts 1 dependents

lumenlearning

rise:Conduct RISE Analysis

Implements techniques for educational resource inspection, selection, and evaluation (RISE) described in Bodily, Nyland, and Wiley (2017) <doi:10.19173/irrodl.v18i2.2952>. Automates the process of identifying learning materials that are not effectively supporting student learning in technology-mediated courses by synthesizing information about access to course content and performance on assessments.

Maintained by David Wiley. Last updated 6 years ago.

continuous-improvement learning-analytics open-educational-resources

0.5 match 7 stars 3.54 score 7 scripts

imranshakoor

DataSetsUni:A Collection of Univariate Data Sets

A collection of widely used univariate data sets of various applied domains on applications of distribution theory. The functions allow researchers and practitioners to quickly, easily, and efficiently access and use these data sets. The data are related to different applied domains and as follows: Bio-medical, survival analysis, medicine, reliability analysis, hydrology, actuarial science, operational research, meteorology, extreme values, quality control, engineering, finance, sports and economics. The total 100 data sets are documented along with associated references for further details and uses.

Maintained by Muhammad Imran. Last updated 2 years ago.

1.7 match 1.00 score 1 scripts

pwbogaart

PantaRhei:Plots Sankey Diagrams

Sankey diagrams are a powerful and visually attractive way to visualize the flow of conservative substances through a system. They typically consists of a network of nodes, and fluxes between them, where the total balance in each internal node is 0, i.e. input equals output. Sankey diagrams are typically used to display energy systems, material flow accounts etc. Unlike so-called alluvial plots, Sankey diagrams also allow for cyclic flows: flows originating from a single node can, either direct or indirect, contribute to the input of that same node. This package, named after the Greek aphorism Panta Rhei (everything flows), provides functions to create publication-quality diagrams, using data in tables (or spread sheets) and a simple syntax.

Maintained by Patrick Bogaart. Last updated 4 years ago.

0.5 match 3 stars 3.18 score 9 scripts

eliocamp

ggdatasaver:Automatically save data associated with a 'ggplot2' plot

Automatically create a file with the data used to create a 'ggplot2' plot. Each layer's data is saved in its own csv file inside a compressed file. These files can then be published as supplemental material so that other people can re-do your plots without the need of digitising them. Because the only data that is saved is the one that is shown in the plot, there are fewer privacy concerns.

Maintained by Elio Campitelli. Last updated 2 years ago.

ggplot2

0.5 match 23 stars 3.06 score 2 scripts

kwb-r

dwc.wells:A Package for Condition Predictions for Drinking Water Wells

This package allows to predict the condition of a drinking water well based on ML models. The models are trained with results from pump tests and a large set of input variables e.g. the well material, the age and the number of regenerations.

Maintained by Michael Rustler. Last updated 3 years ago.

machine-learning project-dwc

0.5 match 3.00 score 7 scripts

tuncerkerem

experimentr:Datasets Used in Social Science Experiments: A Hands-on Introduction

Contains all the datasets that were used in Social Science Experiments: A Hands-On Introduction and in its R Companion. Relevant materials can be found at <https://osf.io/b78je>.

Maintained by Kerem Tuncer. Last updated 3 years ago.

0.5 match 2.70 score 8 scripts

cran

isingLenzMC:Monte Carlo for Classical Ising Model

Classical Ising Model is a land mark system in statistical physics.The model explains the physics of spin glasses and magnetic materials, and cooperative phenomenon in general, for example phase transitions and neural networks.This package provides utilities to simulate one dimensional Ising Model with Metropolis and Glauber Monte Carlo with single flip dynamics in periodic boundary conditions. Utility functions for exact solutions are provided.

Maintained by Mehmet Suzen. Last updated 9 years ago.

0.5 match 2.70 score

ikosmidis

semnar:Constructing and Interacting with Databases of Presentations

Provides methods for constructing and maintaining a database of presentations in R. The presentations are either ones that the user gives or gave or presentations at a particular event or event series. The package also provides a plot method for the interactive mapping of the presentations using 'leaflet' by grouping them according to country, city, year and other presentation attributes. The markers on the map come with popups providing presentation details (title, institution, event, links to materials and events, and so on).

Maintained by Ioannis Kosmidis. Last updated 7 months ago.

0.5 match 2.70 score

chadr

droptest:Simulates LOX Drop Testing

Generates simulated data representing the LOX drop testing process (also known as impact testing). A simulated process allows for accelerated study of test behavior. Functions are provided to simulate trials, test series, and groups of test series. Functions for creating plots specific to this process are also included. Test attributes and criteria can be set arbitrarily. This work is not endorsed by or affiliated with NASA. See "ASTM G86-17, Standard Test Method for Determining Ignition Sensitivity of Materials to Mechanical Impact in Ambient Liquid Oxygen and Pressurized Liquid and Gaseous Oxygen Environments" <doi:10.1520/G0086-17>.

Maintained by Chad Ross. Last updated 7 years ago.

0.5 match 1 stars 2.70 score 8 scripts

akarl46556

SVEMnet:Self-Validated Ensemble Models with Elastic Net Regression

Implements Self-Validated Ensemble Models (SVEM, Lemkus et al. (2021) <doi:10.1016/j.chemolab.2021.104439>) using Elastic Net regression via 'glmnet' (Friedman et al. <doi:10.18637/jss.v033.i01>). SVEM averages predictions from multiple models fitted to fractionally weighted bootstraps of the data, tuned with anti-correlated validation weights. Also implements the randomized permutation whole model test for SVEM (Karl (2024) <doi:10.1016/j.chemolab.2024.105122>). \\Code for the whole model test was taken from the supplementary material of Karl (2024). Development of this package was assisted by 'GPT o1-preview' for code structure and documentation.

Maintained by Andrew T. Karl. Last updated 3 months ago.

0.5 match 2.60 score 5 scripts

atsa-es

atsalibrary:Packages, data and scripts for ATSA course and lab book

This package will load the needed packages and data files for the ATSA course material when students install from GitHub.

Maintained by Elizabeth E. Holmes. Last updated 2 years ago.

0.5 match 4 stars 2.41 score 13 scripts

benradford

mmtsne:Multiple Maps t-SNE

An implementation of multiple maps t-distributed stochastic neighbor embedding (t-SNE). Multiple maps t-SNE is a method for projecting high-dimensional data into several low-dimensional maps such that non-metric space properties are better preserved than they would be by a single map. Multiple maps t-SNE with only one map is equivalent to standard t-SNE. When projecting onto more than one map, multiple maps t-SNE estimates a set of latent weights that allow each point to contribute to one or more maps depending on similarity relationships in the original data. This implementation is a port of the original 'Matlab' library by Laurens van der Maaten. See Van der Maaten and Hinton (2012) <doi:10.1007/s10994-011-5273-4>. This material is based upon work supported by the United States Air Force and Defense Advanced Research Project Agency (DARPA) under Contract No. FA8750-17-C-0020. Any opinions, findings and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the United States Air Force and Defense Advanced Research Projects Agency. Distribution Statement A: Approved for Public Release; Distribution Unlimited.

Maintained by Benjamin J. Radford. Last updated 8 years ago.

0.8 match 1.70 score 3 scripts

rdinnager

sdmpack:FIU SDM Course Package

Course material for FIU course on SDM

Maintained by Russell Dinnage. Last updated 1 years ago.

0.6 match 2.08 score 24 scripts

bergsmat

plotscale:Scale Graphics Devices Using Plot Dimensions

Figures rendered on graphics devices are usually rescaled to fit pre-determined device dimensions. 'plotscale' implements the reverse: desired plot dimensions are specified and device dimensions are calculated to accommodate marginal material, giving consistent proportions for plot elements. Default methods support grid graphics such as lattice and ggplot. See "example('devsize')" and "vignette('plotscale')".

Maintained by Tim Bergsma. Last updated 7 years ago.

0.5 match 2.36 score 23 scripts

oxfordihtm

aurora:Interface to the Oxford University Research Archive

The Oxford University Research Archive (ORA) <https://ora.ox.ac.uk/> is an Open Access platform and is the institutional repository for the University of Oxford. ORA serves as a permanent and secure online archive of research materials produced by members of the University of Oxford. ORA supports and participates in the Open Archives Initiative (OAI). ORA is a registered OAI-PMH data-provider and provides metadata for all public records which is updated as soon as each record is published or updated. ORA also provides API access to its resources. This package provides low level functions to interface with the ORA API <https://ora.ox.ac.uk/api>.

Maintained by Ernest Guevarra. Last updated 5 months ago.

api oai oxford-university

0.5 match 1 stars 2.30 score

msperlin

pafdR:Book Companion for Processing and Analyzing Financial Data with R

Provides access to material from the book "Processing and Analyzing Financial Data with R" by Marcelo Perlin (2017) available at <https://sites.google.com/view/pafdr/home>.

Maintained by Marcelo Perlin. Last updated 8 years ago.

0.5 match 2.08 score 12 scripts

cran

chatRater:Rating and Evaluating Texts Using Large Language Models

Generates ratings and psycholinguistic metrics for textual stimuli using large language models. It enables users to evaluate idioms and other language materials by combining context, prompts, and stimulus inputs. It supports multiple LLM APIs (such as 'OpenAI', 'DeepSeek', 'Anthropic', 'Cohere', 'Google PaLM', and 'Ollama') by allowing users to switch models with a single parameter. In addition to generating numeric ratings, 'chatRater' provides functions for obtaining detailed psycholinguistic metrics including word frequency (with optional corpus input), lexical coverage (with customizable vocabulary size and test basis), Zipf metric, Levenshtein distance, and semantic transparency.

Maintained by Shiyang Zheng. Last updated 28 days ago.

0.5 match 1 stars 2.00 score

cwru-sdle

FAIRmaterials:Ontology Tools with Data FAIRification in Development

Translates several CSV files with ontological terms and corresponding data into RDF triples. These RDF triples are stored in OWL and JSON-LD files, facilitating data accessibility, interoperability, and knowledge unification. The triples are also visualized in a graph saved as an SVG. The input CSVs must be formatted with a template from a public Google Sheet; see README or vignette for more information. This is a tool is used by the SDLE Research Center at Case Western Reserve University to create and visualize material science ontologies, and it includes example ontologies to demonstrate its capabilities. This work was supported by the U.S. Department of Energy’s Office of Energy Efficiency and Renewable Energy (EERE) under Solar Energy Technologies Office (SETO) Agreement Numbers E-EE0009353 and DE-EE0009347, Department of Energy (National Nuclear Security Administration) under Award Number DE-NA0004104 and Contract number B647887, and U.S. National Science Foundation Award under Award Number 2133576.

Maintained by Roger H French. Last updated 9 months ago.

0.5 match 2.00 score 8 scripts

cran

SunsVoc:Constructing Suns-Voc from Outdoor Time-Series I-V Curves

Suns-Voc (or Isc-Voc) curves can provide the current-voltage (I-V) characteristics of the diode of photovoltaic cells without the effect of series resistance. Here, Suns-Voc curves can be constructed with outdoor time-series I-V curves [1,2,3] of full-size photovoltaic (PV) modules instead of having to be measured in the lab. Time series of four different power loss modes can be calculated based on obtained Isc-Voc curves. This material is based upon work supported by the U.S. Department of Energy's Office of Energy Efficiency and Renewable Energy (EERE) under Solar Energy Technologies Office (SETO) Agreement Number DE-EE0008172. Jennifer L. Braid is supported by the U.S. Department of Energy (DOE) Office of Energy Efficiency and Renewable Energy administered by the Oak Ridge Institute for Science and Education (ORISE) for the DOE. ORISE is managed by Oak Ridge Associated Universities (ORAU) under DOE contract number DE-SC0014664. [1] Wang, M. et al, 2018. <doi:10.1109/PVSC.2018.8547772>. [2] Walters et al, 2018 <doi:10.1109/PVSC.2018.8548187>. [3] Guo, S. et al, 2016. <doi:10.1117/12.2236939>.

Maintained by Tyler J. Burleyson. Last updated 4 years ago.

0.5 match 2.00 score

pmair78

MPsychoR:Modern Psychometrics with R

Supplementary materials and datasets for the book "Modern Psychometrics With R" (Mair, 2018, Springer useR! series).

Maintained by Patrick Mair. Last updated 5 years ago.

0.5 match 1.73 score 54 scripts

aalborg-intelligence

aai:Functions, apps, exercises and other R related stuff used in "AI - Aalborg Intelligence"

Functions, apps, exercises and other R related stuff used in "AI - Aalborg Intelligence" The project (2020 - 2026) is supported by the Novo Nordisk Foundation to develop teaching material to be used in the Danish highschools to strengthen the understanding of AI while explaining how basic maths is used in the some popular AI methods.

Maintained by Ege Rubak. Last updated 2 years ago.

0.5 match 1 stars 1.70 score 1 scripts

selesnow

galigor:Collection of Packages for Internet Marketing

Collection of packages for work with API 'Google Ads' <https://developers.google.com/google-ads/api/docs/start>, 'Yandex Direct' <https://yandex.ru/dev/direct/>, 'Yandex Metrica' <https://yandex.ru/dev/metrika/>, 'MyTarget' <https://target.my.com/help/advertisers/api_arrangement/ru>, 'Vkontakte' <https://vk.com/dev/methods>, 'Facebook' <https://developers.facebook.com/docs/marketing-apis/> and 'AppsFlyer' <https://support.appsflyer.com/hc/en-us/articles/207034346-Using-Pull-API-aggregate-data>. This packages allows you loading data from ads account and manage your ads materials.

Maintained by Alexey Seleznev. Last updated 4 years ago.

0.5 match 1.70 score 2 scripts