Showing 200 of total 319 results (show query)

henrikbengtsson

R.utils:Various Programming Utilities

Utility functions useful when programming and developing R packages.

Maintained by Henrik Bengtsson. Last updated 1 years ago.

7.5 match 63 stars 13.74 score 5.7k scripts 814 dependents

r-gregmisc

gmodels:Various R Programming Tools for Model Fitting

Various R programming tools for model fitting.

Maintained by Gregory R. Warnes. Last updated 3 months ago.

8.2 match 1 stars 10.01 score 3.5k scripts 30 dependents

tidyverse

modelr:Modelling Functions that Work with the Pipe

Functions for modelling that help you seamlessly integrate modelling into a pipeline of data manipulation and visualisation.

Maintained by Hadley Wickham. Last updated 1 years ago.

modelling

4.1 match 401 stars 16.44 score 6.9k scripts 1.0k dependents

devopifex

erratum:Handle Error and Warning Messages

Elegantly handle error and warning messages.

Maintained by John Coene. Last updated 1 years ago.

error-handlingwarning

20.7 match 22 stars 3.04 score 5 scripts

pharmar

riskmetric:Risk Metrics to Evaluating R Packages

Facilities for assessing R packages against a number of metrics to help quantify their robustness.

Maintained by Eli Miller. Last updated 9 days ago.

3.4 match 167 stars 8.89 score 43 scripts

projectmosaic

mosaicCore:Common Utilities for Other MOSAIC-Family Packages

Common utilities used in other MOSAIC-family packages are collected here.

Maintained by Randall Pruim. Last updated 1 years ago.

4.1 match 1 stars 7.07 score 113 scripts 26 dependents

rdoctaskforce

pkgcond:Classed Error and Warning Conditions

This provides utilities for creating classed error and warning conditions based on where the error originated.

Maintained by Andrew Redd. Last updated 4 years ago.

5.5 match 5 stars 5.19 score 41 scripts 5 dependents

insightsengineering

teal.code:Code Storage and Execution Class for 'teal' Applications

Introduction of 'qenv' S4 class, that facilitates code execution and reproducibility in 'teal' applications.

Maintained by Dawid Kaledkowski. Last updated 1 months ago.

nestshiny

3.1 match 12 stars 9.03 score 11 scripts 9 dependents

vubiostat

yaml:Methods to Convert R Data to YAML and Back

Implements the 'libyaml' 'YAML' 1.1 parser and emitter (<https://pyyaml.org/wiki/LibYAML>) for R.

Maintained by Shawn Garbett. Last updated 3 months ago.

yaml

1.5 match 166 stars 17.74 score 5.2k scripts 5.1k dependents

projectmosaic

ggformula:Formula Interface to the Grammar of Graphics

Provides a formula interface to 'ggplot2' graphics.

Maintained by Randall Pruim. Last updated 12 months ago.

2.3 match 38 stars 11.60 score 1.7k scripts 25 dependents

danchaltiel

EDCimport:Import Data from EDC Software

A convenient toolbox to import data exported from Electronic Data Capture (EDC) software 'TrialMaster'.

Maintained by Dan Chaltiel. Last updated 6 days ago.

4.0 match 6.01 score 12 scripts

truecluster

ff:Memory-Efficient Storage of Large Data on Disk and Fast Access Functions

The ff package provides data structures that are stored on disk but behave (almost) as if they were in RAM by transparently mapping only a section (pagesize) in main memory - the effective virtual memory consumption per ff object. ff supports R's standard atomic data types 'double', 'logical', 'raw' and 'integer' and non-standard atomic types boolean (1 bit), quad (2 bit unsigned), nibble (4 bit unsigned), byte (1 byte signed with NAs), ubyte (1 byte unsigned), short (2 byte signed with NAs), ushort (2 byte unsigned), single (4 byte float with NAs). For example 'quad' allows efficient storage of genomic data as an 'A','T','G','C' factor. The unsigned types support 'circular' arithmetic. There is also support for close-to-atomic types 'factor', 'ordered', 'POSIXct', 'Date' and custom close-to-atomic types. ff not only has native C-support for vectors, matrices and arrays with flexible dimorder (major column-order, major row-order and generalizations for arrays). There is also a ffdf class not unlike data.frames and import/export filters for csv files. ff objects store raw data in binary flat files in native encoding, and complement this with metadata stored in R as physical and virtual attributes. ff objects have well-defined hybrid copying semantics, which gives rise to certain performance improvements through virtualization. ff objects can be stored and reopened across R sessions. ff files can be shared by multiple ff R objects (using different data en/de-coding schemes) in the same process or from multiple R processes to exploit parallelism. A wide choice of finalizer options allows to work with 'permanent' files as well as creating/removing 'temporary' ff files completely transparent to the user. On certain OS/Filesystem combinations, creating the ff files works without notable delay thanks to using sparse file allocation. Several access optimization techniques such as Hybrid Index Preprocessing and Virtualization are implemented to achieve good performance even with large datasets, for example virtual matrix transpose without touching a single byte on disk. Further, to reduce disk I/O, 'logicals' and non-standard data types get stored native and compact on binary flat files i.e. logicals take up exactly 2 bits to represent TRUE, FALSE and NA. Beyond basic access functions, the ff package also provides compatibility functions that facilitate writing code for ff and ram objects and support for batch processing on ff objects (e.g. as.ram, as.ff, ffapply). ff interfaces closely with functionality from package 'bit': chunked looping, fast bit operations and coercions between different objects that can store subscript information ('bit', 'bitwhich', ff 'boolean', ri range index, hi hybrid index). This allows to work interactively with selections of large datasets and quickly modify selection criteria. Further high-performance enhancements can be made available upon request.

Maintained by Jens Oehlschlรคgel. Last updated 2 months ago.

cpp

2.0 match 27 stars 12.01 score 764 scripts 71 dependents

r-gregmisc

gtools:Various R Programming Tools

Functions to assist in R programming, including: - assist in developing, updating, and maintaining R and R packages ('ask', 'checkRVersion', 'getDependencies', 'keywords', 'scat'), - calculate the logit and inverse logit transformations ('logit', 'inv.logit'), - test if a value is missing, empty or contains only NA and NULL values ('invalid'), - manipulate R's .Last function ('addLast'), - define macros ('defmacro'), - detect odd and even integers ('odd', 'even'), - convert strings containing non-ASCII characters (like single quotes) to plain ASCII ('ASCIIfy'), - perform a binary search ('binsearch'), - sort strings containing both numeric and character components ('mixedsort'), - create a factor variable from the quantiles of a continuous variable ('quantcut'), - enumerate permutations and combinations ('combinations', 'permutation'), - calculate and convert between fold-change and log-ratio ('foldchange', 'logratio2foldchange', 'foldchange2logratio'), - calculate probabilities and generate random numbers from Dirichlet distributions ('rdirichlet', 'ddirichlet'), - apply a function over adjacent subsets of a vector ('running'), - modify the TCP_NODELAY ('de-Nagle') flag for socket objects, - efficient 'rbind' of data frames, even if the column names don't match ('smartbind'), - generate significance stars from p-values ('stars.pval'), - convert characters to/from ASCII codes ('asc', 'chr'), - convert character vector to ASCII representation ('ASCIIfy'), - apply title capitalization rules to a character vector ('capwords').

Maintained by Ben Bolker. Last updated 9 months ago.

1.5 match 25 stars 14.47 score 11k scripts 1.1k dependents

berndbischl

BBmisc:Miscellaneous Helper Functions for B. Bischl

Miscellaneous helper functions for and from B. Bischl and some other guys, mainly for package development.

Maintained by Bernd Bischl. Last updated 2 years ago.

2.0 match 20 stars 10.59 score 980 scripts 69 dependents

murrayefford

openCR:Open Population Capture-Recapture

Non-spatial and spatial open-population capture-recapture analysis.

Maintained by Murray Efford. Last updated 5 months ago.

cpp

3.3 match 4 stars 5.98 score 53 scripts

fmmattioni

downloadthis:Implement Download Buttons in 'rmarkdown'

Implement download buttons in HTML output from 'rmarkdown' without the need for 'runtime:shiny'.

Maintained by Felipe Mattioni Maturana. Last updated 5 months ago.

2.0 match 146 stars 9.63 score 856 scripts 1 dependents

yihui

testit:A Simple Package for Testing R Packages

Provides two convenience functions assert() and test_pkg() to facilitate testing R packages.

Maintained by Yihui Xie. Last updated 1 years ago.

testing

1.8 match 58 stars 9.96 score 1.1k scripts 15 dependents

ankane

rollbar:Error Tracking and Logging

Reports errors and messages to Rollbar, the error tracking platform <https://rollbar.com>.

Maintained by Andrew Kane. Last updated 10 months ago.

4.5 match 12 stars 3.82 score 11 scripts

pik-piam

mip:Comparison of multi-model runs

Package contains generic functions to produce comparison plots of multi-model runs.

Maintained by David Klein. Last updated 26 days ago.

2.0 match 1 stars 8.08 score 70 scripts 20 dependents

fishfollower

stockassessment:State-Space Assessment Model

Fitting SAM...

Maintained by Anders Nielsen. Last updated 13 days ago.

stockassessmentcpp

1.8 match 49 stars 7.76 score 324 scripts 2 dependents

atorus-research

xportr:Utilities to Output CDISC SDTM/ADaM XPT Files

Tools to build CDISC compliant data sets and check for CDISC compliance.

Maintained by Eli Miller. Last updated 3 months ago.

clinical-programmersxpt

1.5 match 43 stars 9.01 score 102 scripts

mrc-ide

naomi:Naomi Model for Subnational HIV Estimates

This package implements the Naomi model for subnational HIV estimates.

Maintained by Jeff Eaton. Last updated 6 days ago.

cpp

1.7 match 9 stars 7.74 score 54 scripts 2 dependents

wernerstahel

plgraphics:User Oriented Plotting Functions

Plots with high flexibility and easy handling, including informative regression diagnostics for many models.

Maintained by Werner A. Stahel. Last updated 1 years ago.

5.6 match 2.08 score 12 scripts

jpearson0525

micromapST:Linked Micromap Plots for U. S. and Other Geographic Areas

Provides the users with the ability to quickly create linked micromap plots for a collection of geographic areas. Linked micromap plots are visualizations of geo-referenced data that link statistical graphics to an organized series of small maps or graphic images. The Help description contains examples of how to use the 'micromapST' function. Contained in this package are border group datasets to support creating linked micromap plots for the 50 U.S. states and District of Columbia (51 areas), the U. S. 20 Seer Registries, the 105 counties in the state of Kansas, the 62 counties of New York, the 24 counties of Maryland, the 29 counties of Utah, the 32 administrative areas in China, the 218 administrative areas in the UK and Ireland (for testing only), the 25 districts in the city of Seoul South Korea, and the 52 counties on the Africa continent. A border group dataset contains the boundaries related to the data level areas, a second layer boundaries, a top or third layer boundary, a parameter list of run options, and a cross indexing table between area names, abbreviations, numeric identification and alias matching strings for the specific geographic area. By specifying a border group, the package create linked micromap plots for any geographic region. The user can create and provide their own border group dataset for any area beyond the areas contained within the package. In version 3.0.0, the 'BuildBorderGroup' function was upgraded to not use the retiring 'maptools', 'rgdal', and 'rgeos' packages. References: Carr and Pickle, Chapman and Hall/CRC, Visualizing Data Patterns with Micromaps, CRC Press, 2010. Pickle, Pearson, and Carr (2015), micromapST: Exploring and Communicating Geospatial Patterns in US State Data., Journal of Statistical Software, 63(3), 1-25., <https://www.jstatsoft.org/v63/i03/>. Copyrighted 2013, 2014, 2015, 2016, 2022, 2023, 2024, and 2025 by Carr, Pearson and Pickle.

Maintained by Jim Pearson. Last updated 1 months ago.

3.5 match 2.80 score 21 scripts