Showing 66 of total 66 results (show query)
daroczig
logger:A Lightweight, Modern and Flexible Logging Utility
Inspired by the the 'futile.logger' R package and 'logging' Python module, this utility provides a flexible and extensible way of formatting and delivering log messages with low overhead.
Maintained by Gergely Daróczi. Last updated 2 months ago.
86.1 match 298 stars 16.88 score 1.5k scripts 98 dependents
pecanproject
PEcAn.logger:Logger Functions for 'PEcAn'
Convenience functions for logging outputs from 'PEcAn', the Predictive Ecosystem Analyzer (LeBauer et al. 2017) <doi:10.1890/12-0137.1>. Enables the user to set what level of messages are printed, as well as whether these messages are written to the console, a file, or both. It also allows control over whether severe errors should stop execution of the 'PEcAn' workflow; this allows strictness when debugging and lenience when running large batches of simulations that should not be terminated by errors in individual models. It is loosely based on the 'log4j' package.
Maintained by Rob Kooper. Last updated 2 days ago.
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
69.0 match 216 stars 9.64 score 7 scripts 40 dependents
cran
futile.logger:A Logging Utility for R
Provides a simple yet powerful logging utility. Based loosely on log4j, futile.logger takes advantage of R idioms to make logging a convenient and easy to use replacement for cat and print statements.
Maintained by Brian Lee Yung Rowe. Last updated 9 years ago.
56.4 match 9.32 score 1.7k scripts 1.2k dependents
s-fleck
lgr:A Fully Featured Logging Framework
A flexible, feature-rich yet light-weight logging framework based on 'R6' classes. It supports hierarchical loggers, custom log levels, arbitrary data fields in log events, logging to plaintext, 'JSON', (rotating) files, memory buffers. For extra appenders that support logging to databases, email and push notifications see the the package lgr.app.
Maintained by Stefan Fleck. Last updated 4 months ago.
31.6 match 81 stars 11.29 score 120 scripts 93 dependents
insightsengineering
teal.logger:Logging Setup for the 'teal' Family of Packages
Utilizing the 'logger' framework to record events within a package, specific to 'teal' family of packages. Supports logging namespaces, hierarchical logging, various log destinations, vectorization, and more.
Maintained by Dawid Kaledkowski. Last updated 1 months ago.
43.0 match 5 stars 8.24 score 3 scripts 8 dependents
bioc
RnBeads:RnBeads
RnBeads facilitates comprehensive analysis of various types of DNA methylation data at the genome scale.
Maintained by Fabian Mueller. Last updated 1 months ago.
dnamethylationmethylationarraymethylseqepigeneticsqualitycontrolpreprocessingbatcheffectdifferentialmethylationsequencingcpgislandimmunooncologytwochanneldataimport
37.3 match 6.85 score 169 scripts 1 dependents
ohdsi
ParallelLogger:Support for Parallel Computation, Logging, and Function Automation
Support for parallel computation with progress bar, and option to stop or proceed on errors. Also provides logging to console and disk, and the logging persists in the parallel threads. Additional functions support function call automation with delayed execution (e.g. for executing functions in parallel).
Maintained by Martijn Schuemie. Last updated 6 months ago.
24.6 match 12 stars 9.18 score 87 scripts 11 dependents
kwb-r
kwb.logger:Functions to read measurement data from logger files
Functions to read measurement data from logger files.
Maintained by Hauke Sonnenberg. Last updated 3 years ago.
77.1 match 1 stars 2.78 score 1 scripts 4 dependents
mazamascience
MazamaCoreUtils:Utility Functions for Production R Code
A suite of utility functions providing functionality commonly needed for production level projects such as logging, error handling, cache management and date-time parsing. Functions for date-time parsing and formatting require that time zones be specified explicitly, avoiding a common source of error when working with environmental time series.
Maintained by Jonathan Callahan. Last updated 3 months ago.
26.0 match 4 stars 7.76 score 119 scripts 5 dependents
r-lib
log4r:A Fast and Lightweight Logging System for R, Based on 'log4j'
The log4r package is meant to provide a fast, lightweight, object-oriented approach to logging in R based on the widely-emulated 'log4j' system and etymology.
Maintained by Aaron Jacobs. Last updated 5 months ago.
13.9 match 95 stars 10.89 score 217 scripts 15 dependents
ibot-geoecology
myClim:Microclimatic Data Processing
Handling the microclimatic data in R. The 'myClim' workflow begins at the reading data primary from microclimatic dataloggers, but can be also reading of meteorological station data from files. Cleaning time step, time zone settings and metadata collecting is the next step of the work flow. With 'myClim' tools one can crop, join, downscale, and convert microclimatic data formats, sort them into localities, request descriptive characteristics and compute microclimatic variables. Handy plotting functions are provided with smart defaults.
Maintained by Vojtěch Kalčík. Last updated 14 days ago.
17.9 match 7 stars 6.97 score 30 scripts
wlogsolutions
logging:R Logging Package
Pure R implementation of the ubiquitous log4j package. It offers hierarchic loggers, multiple handlers per logger, level based filtering, space handling in messages and custom formatting.
Maintained by Walerian Sokolowski. Last updated 6 years ago.
10.2 match 60 stars 9.12 score 560 scripts 23 dependents
meo265
loggit2:Easy-to-Use, Dependencyless Logger
An easy-to-use 'ndjson' (newline-delimited 'JSON') logger. It provides a set of wrappers for base R's message(), warning(), and stop() functions that maintain identical functionality, but also log the handler message to an 'ndjson' log file. No change in existing code is necessary to use this package, and only a few additional adjustments are needed to fully utilize its potential.
Maintained by Matthias Ollech. Last updated 9 days ago.
14.6 match 2 stars 5.75 score 1 scripts
ropensci
beautier:'BEAUti' from R
'BEAST2' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'BEAUti 2' (which is part of 'BEAST2') is a GUI tool that allows users to specify the many possible setups and generates the XML file 'BEAST2' needs to run. This package provides a way to create 'BEAST2' input files without active user input, but using R function calls instead.
Maintained by Richèl J.C. Bilderbeek. Last updated 23 days ago.
bayesianbeastbeast2beautiphylogenetic-inferencephylogenetics
9.3 match 13 stars 8.76 score 198 scripts 5 dependentsbioc
RMassBank:Workflow to process tandem MS files and build MassBank records
Workflow to process tandem MS files and build MassBank records. Functions include automated extraction of tandem MS spectra, formula assignment to tandem MS fragments, recalibration of tandem MS spectra with assigned fragments, spectrum cleanup, automated retrieval of compound information from Internet databases, and export to MassBank records.
Maintained by RMassBank at Eawag. Last updated 5 months ago.
immunooncologybioinformaticsmassspectrometrymetabolomicssoftwareopenjdk
11.7 match 6.19 score 26 scripts
eldarrak
FLightR:Reconstruct Animal Paths from Solar Geolocation Loggers Data
Spatio-temporal locations of an animal are computed from annotated data with a hidden Markov model via particle filter algorithm. The package is relatively robust to varying degrees of shading. The hidden Markov model is described in Movement Ecology - Rakhimberdiev et al. (2015) <doi:10.1186/s40462-015-0062-5>, general package description is in the Methods in Ecology and Evolution - Rakhimberdiev et al. (2017) <doi:10.1111/2041-210X.12765> and package accuracy assessed in the Journal of Avian Biology - Rakhimberdiev et al. (2016) <doi:10.1111/jav.00891>.
Maintained by Eldar Rakhimberdiev. Last updated 6 months ago.
movement-ecologysolar-geolocation-loggerssolar-geolocator
9.5 match 22 stars 7.26 score 111 scripts
nsaph-software
CausalGPS:Matching on Generalized Propensity Scores with Continuous Exposures
Provides a framework for estimating causal effects of a continuous exposure using observational data, and implementing matching and weighting on the generalized propensity score. Wu, X., Mealli, F., Kioumourtzoglou, M.A., Dominici, F. and Braun, D., 2022. Matching on generalized propensity scores with continuous exposures. Journal of the American Statistical Association, pp.1-29.
Maintained by Naeem Khoshnevis. Last updated 9 months ago.
7.5 match 24 stars 7.67 score 39 scripts
tscnlab
LightLogR:Process Data from Wearable Light Loggers and Optical Radiation Dosimeters
Import, processing, validation, and visualization of personal light exposure measurement data from wearable devices. The package implements features such as the import of data and metadata files, conversion of common file formats, validation of light logging data, verification of crucial metadata, calculation of common parameters, and semi-automated analysis and visualization.
Maintained by Johannes Zauner. Last updated 25 days ago.
dosimetrylighttime-series-analysiswearable-deviceswearable-sensors
9.6 match 12 stars 5.91 score 28 scripts
sg4r
rblt:Bio-Logging Toolbox
An R-shiny application to visualize bio-loggers time series at a microsecond precision as Acceleration, Temperature, Pressure, Light intensity. It is possible to link behavioral labels extracted from 'BORIS' software <http://www.boris.unito.it> or manually written in a csv file.
Maintained by Sebastien Geiger. Last updated 2 months ago.
12.9 match 2 stars 4.30 score 4 scripts
bmoretz
dyn.log:Dynamic Logging for R Inspired by Configuration Driven Development
A comprehensive and dynamic configuration driven logging package for R. While there are several excellent logging solutions already in the R ecosystem, I always feel constrained in some way by each of them. Every project is designed differently to solve it's domain specific problem, and ultimately the utility of a logging solution is its ability to adapt to this design. This is the raison d'être for 'dyn.log': to provide a modular design, template mechanics and a configuration-based integration model, so that the logger can integrate deeply into your design, even though it knows nothing about it.
Maintained by Brandon Moretz. Last updated 3 years ago.
10.9 match 1 stars 4.78 score 10 scripts
ssi-dk
SCDB:Easily Access and Maintain Time-Based Versioned Data (Slowly-Changing-Dimension)
A collection of functions that enable easy access and updating of a database of data over time. More specifically, the package facilitates type-2 history for data-warehouses and provides a number of Quality of life improvements for working on SQL databases with R. For reference see Ralph Kimball and Margy Ross (2013, ISBN 9781118530801).
Maintained by Rasmus Skytte Randløv. Last updated 18 days ago.
7.1 match 6 stars 7.38 score 11 scripts 1 dependents
hannameyer
CAST:'caret' Applications for Spatial-Temporal Models
Supporting functionality to run 'caret' with spatial or spatial-temporal data. 'caret' is a frequently used package for model training and prediction using machine learning. CAST includes functions to improve spatial or spatial-temporal modelling tasks using 'caret'. It includes the newly suggested 'Nearest neighbor distance matching' cross-validation to estimate the performance of spatial prediction models and allows for spatial variable selection to selects suitable predictor variables in view to their contribution to the spatial model performance. CAST further includes functionality to estimate the (spatial) area of applicability of prediction models. Methods are described in Meyer et al. (2018) <doi:10.1016/j.envsoft.2017.12.001>; Meyer et al. (2019) <doi:10.1016/j.ecolmodel.2019.108815>; Meyer and Pebesma (2021) <doi:10.1111/2041-210X.13650>; Milà et al. (2022) <doi:10.1111/2041-210X.13851>; Meyer and Pebesma (2022) <doi:10.1038/s41467-022-29838-9>; Linnenbrink et al. (2023) <doi:10.5194/egusphere-2023-1308>; Schumacher et al. (2024) <doi:10.5194/egusphere-2024-2730>. The package is described in detail in Meyer et al. (2024) <doi:10.48550/arXiv.2404.06978>.
Maintained by Hanna Meyer. Last updated 2 months ago.
autocorrelationcaretfeature-selectionmachine-learningoverfittingpredictive-modelingspatialspatio-temporalvariable-selection
3.8 match 114 stars 11.97 score 298 scripts 1 dependentsnsaph-software
GPCERF:Gaussian Processes for Estimating Causal Exposure Response Curves
Provides a non-parametric Bayesian framework based on Gaussian process priors for estimating causal effects of a continuous exposure and detecting change points in the causal exposure response curves using observational data. Ren, B., Wu, X., Braun, D., Pillai, N., & Dominici, F.(2021). "Bayesian modeling for exposure response curve via gaussian processes: Causal effects of exposure to air pollution on health outcomes." arXiv preprint <doi:10.48550/arXiv.2105.03454>.
Maintained by Boyu Ren. Last updated 11 months ago.
6.2 match 9 stars 6.33 score 16 scripts
olafmersmann
emoa:Evolutionary Multiobjective Optimization Algorithms
Collection of building blocks for the design and analysis of evolutionary multiobjective optimization algorithms.
Maintained by Olaf Mersmann. Last updated 6 months ago.
6.5 match 8 stars 6.02 score 51 scripts 3 dependentsbioc
OmnipathR:OmniPath web service client and more
A client for the OmniPath web service (https://www.omnipathdb.org) and many other resources. It also includes functions to transform and pretty print some of the downloaded data, functions to access a number of other resources such as BioPlex, ConsensusPathDB, EVEX, Gene Ontology, Guide to Pharmacology (IUPHAR/BPS), Harmonizome, HTRIdb, Human Phenotype Ontology, InWeb InBioMap, KEGG Pathway, Pathway Commons, Ramilowski et al. 2015, RegNetwork, ReMap, TF census, TRRUST and Vinayagam et al. 2011. Furthermore, OmnipathR features a close integration with the NicheNet method for ligand activity prediction from transcriptomics data, and its R implementation `nichenetr` (available only on github).
Maintained by Denes Turei. Last updated 19 days ago.
graphandnetworknetworkpathwayssoftwarethirdpartyclientdataimportdatarepresentationgenesignalinggeneregulationsystemsbiologytranscriptomicssinglecellannotationkeggcomplexesenzyme-ptmnetworksnetworks-biologyomnipathproteinsquarto
3.7 match 126 stars 9.90 score 226 scripts 2 dependents
rexyai
RestRserve:A Framework for Building HTTP API
Allows to easily create high-performance full featured HTTP APIs from R functions. Provides high-level classes such as 'Request', 'Response', 'Application', 'Middleware' in order to streamline server side application development. Out of the box allows to serve requests using 'Rserve' package, but flexible enough to integrate with other HTTP servers such as 'httpuv'.
Maintained by Dmitry Selivanov. Last updated 4 days ago.
http-serveropenapirest-apiswagger-uicpp
3.3 match 283 stars 9.56 score 95 scripts 1 dependents
john-d-fox
Rcmdr:R Commander
A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Maintained by John Fox. Last updated 5 months ago.
3.3 match 4 stars 9.49 score 636 scripts 38 dependents
ips-lmu
wrassp:Interface to the 'ASSP' Library
A wrapper around Michel Scheffers's 'libassp' (<https://libassp.sourceforge.net/>). The 'libassp' (Advanced Speech Signal Processor) library aims at providing functionality for handling speech signal files in most common audio formats and for performing analyses common in phonetic science/speech science. This includes the calculation of formants, fundamental frequency, root mean square, auto correlation, a variety of spectral analyses, zero crossing rate, filtering etc. This wrapper provides R with a large subset of 'libassp's signal processing functions and provides them to the user in a (hopefully) user-friendly manner.
Maintained by Markus Jochim. Last updated 1 years ago.
3.9 match 24 stars 7.43 score 62 scripts 3 dependents
kuadrat
growR:Implementation of the Vegetation Model ModVege
Run grass growth simulations using a grass growth model based on ModVege (Jouven, M., P. Carrère, and R. Baumont "Model Predicting Dynamics of Biomass, Structure and Digestibility of Herbage in Managed Permanent Pastures. 1. Model Description." (2006) <doi:10.1111/j.1365-2494.2006.00515.x>). The implementation in this package contains a few additions to the above cited version of ModVege, such as simulations of management decisions, and influences of snow cover. As such, the model is fit to simulate grass growth in mountainous regions, such as the Swiss Alps. The package also contains routines for calibrating the model and helpful tools for analysing model outputs and performance.
Maintained by Kevin Kramer. Last updated 7 months ago.
agronomygrassgrasslandmodellingsimulation-modeling
5.3 match 3 stars 5.28 score 14 scriptsnsaph-software
CRE:Interpretable Discovery and Inference of Heterogeneous Treatment Effects
Provides a new method for interpretable heterogeneous treatment effects characterization in terms of decision rules via an extensive exploration of heterogeneity patterns by an ensemble-of-trees approach, enforcing high stability in the discovery. It relies on a two-stage pseudo-outcome regression, and it is supported by theoretical convergence guarantees. Bargagli-Stoffi, F. J., Cadei, R., Lee, K., & Dominici, F. (2023) Causal rule ensemble: Interpretable Discovery and Inference of Heterogeneous Treatment Effects. arXiv preprint <doi:10.48550/arXiv.2009.09036>.
Maintained by Falco Joannes Bargagli Stoffi. Last updated 5 months ago.
4.0 match 13 stars 6.41 score 11 scripts
eddelbuettel
RcppSpdlog:R and C++ Interfaces to 'spdlog' C++ Header Library for Logging
The mature and widely-used C++ logging library 'spdlog' by Gabi Melman provides many desirable features. This package bundles these header files for easy use by R packages from both their R and C or C++ code. Explicit use via 'LinkingTo:' is also supported. Also see the 'spdl' package which enhanced this package with a consistent R and C++ interface.
Maintained by Dirk Eddelbuettel. Last updated 1 months ago.
3.0 match 16 stars 8.36 score 6 scripts 13 dependents
ambiorix-web
ambiorix:Web Framework Inspired by 'Express.js'
A web framework inspired by 'express.js' to build any web service from multi-page websites to 'RESTful' application programming interfaces.
Maintained by John Coene. Last updated 1 days ago.
3.3 match 212 stars 7.28 score 8 dependents
dipterix
ravedash:Dashboard System for Reproducible Visualization of 'iEEG'
Dashboard system to display the analysis results produced by 'RAVE' (Magnotti J.F., Wang Z., Beauchamp M.S. (2020), Reproducible analysis and visualizations of 'iEEG' <doi:10.1016/j.neuroimage.2020.117341>). Provides infrastructure to integrate customized analysis pipelines into dashboard modules, including file structures, front-end widgets, and event handlers.
Maintained by Zhengjia Wang. Last updated 5 months ago.
5.2 match 1 stars 4.35 score 45 scripts
bwlewis
doRedis:'Foreach' Parallel Adapter Using the 'Redis' Database
Create and manage fault-tolerant task queues for the 'foreach' package using the 'Redis' key/value database.
Maintained by B. W. Lewis. Last updated 4 years ago.
3.3 match 71 stars 6.56 score 42 scripts
antonio-pgarcia
rrepast:Invoke 'Repast Simphony' Simulation Models
An R and Repast integration tool for running individual-based (IbM) simulation models developed using 'Repast Simphony' Agent-Based framework directly from R code supporting multicore execution. This package integrates 'Repast Simphony' models within R environment, making easier the tasks of running and analyzing model output data for automated parameter calibration and for carrying out uncertainty and sensitivity analysis using the power of R environment.
Maintained by Antonio Prestes Garcia. Last updated 5 years ago.
4.5 match 3 stars 4.53 score 38 scripts 1 dependents
aphalo
photobiologyInOut:Read Spectral and Logged Data from Foreign Files
Functions for reading, and in some cases writing, foreign files containing spectral data from spectrometers and their associated software, output from daylight simulation models in common use, and some spectral data repositories. As well as functions for exchange of spectral data with other R packages. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Maintained by Pedro J. Aphalo. Last updated 17 days ago.
3.2 match 6.32 score 63 scripts 1 dependents
berndbischl
BBmisc:Miscellaneous Helper Functions for B. Bischl
Miscellaneous helper functions for and from B. Bischl and some other guys, mainly for package development.
Maintained by Bernd Bischl. Last updated 2 years ago.
1.9 match 20 stars 10.59 score 980 scripts 69 dependents
mlverse
luz:Higher Level 'API' for 'torch'
A high level interface for 'torch' providing utilities to reduce the the amount of code needed for common tasks, abstract away torch details and make the same code work on both the 'CPU' and 'GPU'. It's flexible enough to support expressing a large range of models. It's heavily inspired by 'fastai' by Howard et al. (2020) <arXiv:2002.04688>, 'Keras' by Chollet et al. (2015) and 'PyTorch Lightning' by Falcon et al. (2019) <doi:10.5281/zenodo.3828935>.
Maintained by Daniel Falbel. Last updated 6 months ago.
2.0 match 89 stars 9.86 score 318 scripts 4 dependents
jumpingrivers
audit.base:Base package for Posit Checks
Base package for sharing classes between posit audit packages. Unlikely to be useful as is.
Maintained by Jumping Rivers. Last updated 24 days ago.
5.3 match 3.38 score 1 scripts 2 dependents
zhao-jun-yong
aelab:Data Processing for Aquatic Ecology
Facilitate the analysis of data related to aquatic ecology, specifically the establishment of carbon budget. Currently, the package allows the below analysis. (i) the calculation of greenhouse gas flux based on data obtained from trace gas analyzer using the method described in Lin et al. (2024). (ii) the calculation of Dissolved Oxygen (DO) metabolism based on data obtained from dissolved oxygen data logger using the method described in Staehr et al. (2010). Yong et al. (2024) <doi:10.5194/bg-21-5247-2024>. Staehr et al. (2010) <doi:10.4319/lom.2010.8.0628>.
Maintained by Zhao-Jun Yong. Last updated 3 months ago.
3.7 match 4.54 score 2 scripts
atheriel
rsyslog:Interface to the 'syslog' System Logger
Functions to write messages to the 'syslog' system logger API, available on all 'POSIX'-compatible operating systems. Features include tagging messages with a priority level and application type, as well as masking (hiding) messages below a given priority level.
Maintained by Aaron Jacobs. Last updated 2 years ago.
3.6 match 26 stars 4.33 score 15 scripts
loosolab
wilson:Web-Based Interactive Omics Visualization
Tool-set of modules for creating web-based applications that use plot based strategies to visualize and analyze multi-omics data. This package utilizes the 'shiny' and 'plotly' frameworks to provide a user friendly dashboard for interactive plotting.
Maintained by Hendrik Schultheis. Last updated 4 years ago.
3.6 match 2 stars 4.30 score 7 scripts
coffeemuggler
eseis:Environmental Seismology Toolbox
Environmental seismology is a scientific field that studies the seismic signals, emitted by Earth surface processes. This package provides all relevant functions to read/write seismic data files, prepare, analyse and visualise seismic data, and generate reports of the processing history.
Maintained by Michael Dietze. Last updated 4 months ago.
3.5 match 9 stars 4.42 score 58 scriptsbioc
biodb:biodb, a library and a development framework for connecting to chemical and biological databases
The biodb package provides access to standard remote chemical and biological databases (ChEBI, KEGG, HMDB, ...), as well as to in-house local database files (CSV, SQLite), with easy retrieval of entries, access to web services, search of compounds by mass and/or name, and mass spectra matching for LCMS and MSMS. Its architecture as a development framework facilitates the development of new database connectors for local projects or inside separate published packages.
Maintained by Pierrick Roger. Last updated 5 months ago.
softwareinfrastructuredataimportkeggbiologycheminformaticschemistrydatabasescpp
1.9 match 11 stars 7.85 score 24 scripts 6 dependentsropensci
dataaimsr:AIMS Data Platform API Client
AIMS Data Platform API Client which provides easy access to AIMS Data Platform scientific data and information.
Maintained by Diego R. Barneche. Last updated 2 years ago.
aimsaustraliadatamarinemonitoringsstweather
2.9 match 4 stars 5.11 score 54 scripts
egenn
rtemis:Machine Learning and Visualization
Advanced Machine Learning and Visualization. Unsupervised Learning (Clustering, Decomposition), Supervised Learning (Classification, Regression), Cross-Decomposition, Bagging, Boosting, Meta-models. Static and interactive graphics.
Maintained by E.D. Gennatas. Last updated 1 months ago.
data-sciencedata-visualizationmachine-learningmachine-learning-libraryvisualization
2.0 match 145 stars 7.09 score 50 scripts 2 dependents
systemincloud
rly:Tools to Create Formal Language Parser
R implementation of the common parsing tools 'lex' and 'yacc'.
Maintained by Marek Jagielski. Last updated 3 years ago.
1.8 match 37 stars 7.66 score 102 scripts 2 dependents
faskally
loggercal:Estimation of Calibration Equations for Temperature Data Loggers
Contains all functions required to (1) Read in temperature logger calibration data (External and Internal) (2) calculate approximate calibration functions to convert raw temps to true and raw temps to SE of approx (3) output a file containing calibration results by logger for use as a bulk upload to FLEObs database.
Maintained by Colin Millar. Last updated 4 years ago.
7.3 match 1.70 score 2 scripts
sciviews
svUnit:'SciViews' - Unit, Integration and System Testing
A complete unit test system.
Maintained by Philippe Grosjean. Last updated 3 years ago.
1.3 match 3 stars 8.07 score 72 scripts 28 dependentscran
ambiorix:Web Framework Inspired by 'Express.js'
A web framework inspired by 'express.js' to build any web service from multi-page websites to 'RESTful' application programming interfaces.
Maintained by John Coene. Last updated 2 days ago.
3.3 match 3.08 score 8 dependentsambiorix-web
druid:Logger for 'Ambiorix'
A logger for 'Ambiorix' applications to log various events.
Maintained by John Coene. Last updated 3 years ago.
4.3 match 4 stars 2.30 score
troyhill
VulnToolkit:Analysis of Tidal Datasets
Contains functions for analysis and summary of tidal datasets. Also provides access to tidal data collected by the National Oceanic and Atmospheric Administration's Center for Operational Oceanographic Products and Services and the Permanent Service for Mean Sea Level. For detailed description and application examples, see Hill, T.D. and S.C. Anisfeld (2021) <doi:10.6084/m9.figshare.14161202.v1> and Hill, T.D. and S.C. Anisfeld (2015) <doi:10.1016/j.ecss.2015.06.004>.
Maintained by Troy Hill. Last updated 4 years ago.
1.7 match 8 stars 5.18 score 19 scripts
marc-girondot
embryogrowth:Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Tools to analyze the embryo growth and the sexualisation thermal reaction norms. See <doi:10.7717/peerj.8451> for tsd functions; see <doi:10.1016/j.jtherbio.2014.08.005> for thermal reaction norm of embryo growth.
Maintained by Marc Girondot. Last updated 7 months ago.
3.4 match 1 stars 2.40 score 252 scripts
miracum
DIZtools:Lightweight Utilities for 'DIZ' R Package Development
Lightweight utility functions used for the R package development infrastructure inside the data integration centers ('DIZ') to standardize and facilitate repetitive tasks such as setting up a database connection or issuing notification messages and to avoid redundancy.
Maintained by Jonathan M. Mang. Last updated 1 years ago.
1.7 match 3 stars 4.13 score 2 scripts 3 dependentscran
litteR:Litter Analysis
Data sets on various litter types like beach litter, riverain litter, floating litter, and seafloor litter are rapidly growing. This package offers a simple user interface to analyse these litter data in a consistent and reproducible way. It also provides functions to facilitate several kinds of litter analysis, e.g., trend analysis, power analysis, and baseline analysis. Under the hood, these functions are also used by the user interface. See Schulz et al. (2019) <doi:10.1016/j.envpol.2019.02.030> for details. MS-Windows users are advised to run 'litteR' in 'RStudio'. See our vignette: Installation manual for 'RStudio' and 'litteR'.
Maintained by Dennis Walvoort. Last updated 3 years ago.
2.3 match 3.00 score
markvanderloo
lumberjack:Track Changes in Data
A framework that allows for easy logging of changes in data. Main features: start tracking changes by adding a single line of code to an existing script. Track changes in multiple datasets, using multiple loggers. Add custom-built loggers or use loggers offered by other packages. <doi:10.18637/jss.v098.i01>.
Maintained by Mark van der Loo. Last updated 9 months ago.
daffdatascienceloggingreproducible-research
0.9 match 66 stars 7.13 score 68 scripts 1 dependents
krzjoa
path.chain:Concise Structure for Chainable Paths
Provides path_chain class and functions, which facilitates loading and saving directory structure in YAML configuration files via 'config' package. The file structure you created during exploration can be transformed into legible section in the config file, and then easily loaded for further usage.
Maintained by Krzysztof Joachimiak. Last updated 5 months ago.
1.2 match 10 stars 5.34 score 11 scripts
r-leyshon
ptspotter:Helper Functions for Use with "ProjectTemplate"
Utility functions produced specifically for (but not limited to) working with 'ProjectTemplate' data pipelines. This package helps to quickly create and manage sequentially numbered scripts, quickly set up logging with 'log4r' and functions to help debug and monitor procedures.
Maintained by Rich Leyshon. Last updated 2 years ago.
1.5 match 4.00 score 6 scripts
matthewabirk
respirometry:Tools for Conducting and Analyzing Respirometry Experiments
Provides tools to enable the researcher to more precisely conduct respirometry experiments. Strong emphasis is on aquatic respirometry. Tools focus on helping the researcher setup and conduct experiments. Functions for analysis of resulting respirometry data are also provided. This package provides tools for intermittent, flow-through, and closed respirometry techniques.
Maintained by Matthew A. Birk. Last updated 4 months ago.
1.8 match 2.61 score 68 scripts 1 dependents
ryapric
loggit:Modern Logging for the R Ecosystem
An effortless 'ndjson' (newline-delimited 'JSON') logger, with two primary log-writing interfaces. It provides a set of wrappings for base R's message(), warning(), and stop() functions that maintain identical functionality, but also log the handler message to an 'ndjson' log file. 'loggit' also exports its internal 'loggit()' function for powerful and configurable custom logging. No change in existing code is necessary to use this package, and should only require additions to fully leverage the power of the logging system. 'loggit' also provides a log reader for reading an 'ndjson' log file into a data frame, log rotation, and live echo of the 'ndjson' log messages to terminal 'stdout' for log capture by external systems (like containers). 'loggit' is ideal for Shiny apps, data pipelines, modeling work flows, and more. Please see the vignettes for detailed example use cases.
Maintained by Ryan Price. Last updated 3 years ago.
0.5 match 39 stars 7.35 score 38 scripts 5 dependents
heal-kgs
STICr:Process Stream Temperature, Intermittency, and Conductivity (STIC) Sensor Data
A collection of functions for processing raw data from Stream Temperature, Intermittency, and Conductivity (STIC) loggers. 'STICr' (pronounced "sticker") includes functions for tidying, calibrating, classifying, and doing quality checks on data from STIC sensors. Some package functionality is described in Wheeler/Zipper et al. (2023) <doi:10.31223/X5636K>.
Maintained by Sam Zipper. Last updated 4 months ago.
0.5 match 4 stars 5.26 score 9 scripts
millerlp
oceanwaves:Ocean Wave Statistics
Calculate ocean wave height summary statistics and process data from bottom-mounted pressure sensor data loggers. Derived primarily from MATLAB functions provided by U. Neumeier at <http://neumeier.perso.ch/matlab/waves.html>. Wave number calculation based on the algorithm in Hunt, J. N. (1979, ISSN:0148-9895) "Direct Solution of Wave Dispersion Equation", American Society of Civil Engineers Journal of the Waterway, Port, Coastal, and Ocean Division, Vol 105, pp 457-459.
Maintained by Luke Miller. Last updated 4 years ago.
0.5 match 9 stars 4.65 score 10 scripts
atalv
azlogr:Logging in 'R' and Post to 'Azure Log Analytics' Workspace
It extends the functionality of 'logger' package. Additional logging metadata can be configured to be collected. Logging messages are displayed on console and optionally they are sent to 'Azure Log Analytics' workspace in real-time.
Maintained by Vivek Atal. Last updated 12 months ago.
azureazure-log-analyticslogging
0.5 match 3.70 score 8 scriptskwb-r
kwb.ogre:Functions Used Within the OGRE Project at KWB
This package contains functions for: reading logger files.
Maintained by Hauke Sonnenberg. Last updated 4 years ago.
0.6 match 2.48 score 2 scripts 2 dependents