R-universe search: topic:hacktoberfest

easystats

insight:Easy Access to Model Information for Various Model Objects

A tool to provide an easy, intuitive and consistent access to information contained in various R models, like model formulas, model terms, information about random effects, data that was used to fit the model or data from response variables. 'insight' mainly revolves around two types of functions: Functions that find (the names of) information, starting with 'find_', and functions that get the underlying data, starting with 'get_'. The package has a consistent syntax and works with many different model objects, where otherwise functions to access these information are missing.

Maintained by Daniel Lüdecke. Last updated 15 hours ago.

easystats hacktoberfest insight models names predictors random

414 stars 17.39 score 568 scripts 214 dependents

easystats

bayestestR:Understand and Describe Bayesian Models and Posterior Distributions

Provides utilities to describe posterior distributions and Bayesian models. It includes point-estimates such as Maximum A Posteriori (MAP), measures of dispersion (Highest Density Interval - HDI; Kruschke, 2015 <doi:10.1016/C2012-0-00477-2>) and indices used for null-hypothesis testing (such as ROPE percentage, pd and Bayes factors). References: Makowski et al. (2021) <doi:10.21105/joss.01541>.

Maintained by Dominique Makowski. Last updated 8 days ago.

bayes-factors bayesfactor bayesian bayesian-framework credible-interval easystats hacktoberfest hdi map posterior-distributions rope

579 stars 16.87 score 2.2k scripts 83 dependents

easystats

effectsize:Indices of Effect Size

Provide utilities to work with indices of effect size for a wide variety of models and hypothesis tests (see list of supported models using the function 'insight::supported_models()'), allowing computation of and conversion between indices such as Cohen's d, r, odds, etc. References: Ben-Shachar et al. (2020) <doi:10.21105/joss.02815>.

Maintained by Mattan S. Ben-Shachar. Last updated 2 months ago.

anova cohens-d compute conversion correlation effect-size effectsize hacktoberfest hedges-g interpretation standardization standardized statistics

344 stars 16.38 score 1.8k scripts 29 dependents

easystats

performance:Assessment of Regression Models Performance

Utilities for computing measures to assess model quality, which are not directly provided by R's 'base' or 'stats' packages. These include e.g. measures like r-squared, intraclass correlation coefficient (Nakagawa, Johnson & Schielzeth (2017) <doi:10.1098/rsif.2017.0213>), root mean squared error or functions to check models for overdispersion, singularity or zero-inflation and more. Functions apply to a large variety of regression models, including generalized linear models, mixed effects models and Bayesian models. References: Lüdecke et al. (2021) <doi:10.21105/joss.03139>.

Maintained by Daniel Lüdecke. Last updated 4 days ago.

aic easystats hacktoberfest loo machine-learning mixed-models models performance r2 statistics

1.1k stars 16.20 score 4.3k scripts 48 dependents

easystats

parameters:Processing of Model Parameters

Utilities for processing the parameters of various statistical models. Beyond computing p values, CIs, and other indices for a wide variety of models (see list of supported models using the function 'insight::supported_models()'), this package implements features like bootstrapping or simulating of parameters and models, feature reduction (feature extraction and variable selection) as well as functions to describe data and variable characteristics (e.g. skewness, kurtosis, smoothness or distribution).

Maintained by Daniel Lüdecke. Last updated 8 days ago.

beta bootstrap ci confidence-intervals data-reduction easystats fa feature-extraction feature-reduction hacktoberfest parameters pca pvalues regression-models robust-statistics standardize standardized-estimates statistical-models

454 stars 15.67 score 1.8k scripts 56 dependents

strengejacke

ggeffects:Create Tidy Data Frames of Marginal Effects for 'ggplot' from Model Outputs

Compute marginal effects and adjusted predictions from statistical models and returns the result as tidy data frames. These data frames are ready to use with the 'ggplot2'-package. Effects and predictions can be calculated for many different models. Interaction terms, splines and polynomial terms are also supported. The main functions are ggpredict(), ggemmeans() and ggeffect(). There is a generic plot()-method to plot the results using 'ggplot2'.

Maintained by Daniel Lüdecke. Last updated 3 days ago.

estimated-marginal-means hacktoberfest marginal-effects prediction

590 stars 15.58 score 3.6k scripts 7 dependents

easystats

datawizard:Easy Data Wrangling and Statistical Transformations

A lightweight package to assist in key steps involved in any data analysis workflow: (1) wrangling the raw data to get it in the needed form, (2) applying preprocessing steps and statistical transformations, and (3) compute statistical summaries of data properties and distributions. It is also the data wrangling backend for packages in 'easystats' ecosystem. References: Patil et al. (2022) <doi:10.21105/joss.04684>.

Maintained by Etienne Bacher. Last updated 3 days ago.

data dplyr hacktoberfest janitor manipulation reshape tidyr wrangling

223 stars 14.77 score 436 scripts 120 dependents

easystats

report:Automated Reporting of Results and Statistical Models

The aim of the 'report' package is to bridge the gap between R’s output and the formatted results contained in your manuscript. This package converts statistical models and data frames into textual reports suited for publication, ensuring standardization and quality in results reporting.

Maintained by Rémi Thériault. Last updated 2 months ago.

anovas apa automated-report-generation automatic bayesian describe easystats hacktoberfest manuscript models report reporting reports scientific statsmodels

698 stars 14.48 score 1.1k scripts 3 dependents

easystats

correlation:Methods for Correlation Analysis

Lightweight package for computing different kinds of correlations, such as partial correlations, Bayesian correlations, multilevel correlations, polychoric correlations, biweight correlations, distance correlations and more. Part of the 'easystats' ecosystem. References: Makowski et al. (2020) <doi:10.21105/joss.02306>.

Maintained by Brenton M. Wiernik. Last updated 25 days ago.

bayesian bayesian-correlations biserial cor correlation correlation-analysis correlations easystats gamma gaussian-graphical-models hacktoberfest matrix multilevel-correlations outliers partial partial-correlations regression robust spearman

439 stars 14.23 score 672 scripts 10 dependents

thinkr-open

golem:A Framework for Robust Shiny Applications

An opinionated framework for building a production-ready 'Shiny' application. This package contains a series of tools for building a robust 'Shiny' application from start to finish.

Maintained by Colin Fay. Last updated 7 months ago.

golemverse hacktoberfest shiny shiny-apps shiny-r shinyapps

921 stars 14.21 score 167 scripts 63 dependents

easystats

see:Model Visualisation Toolbox for 'easystats' and 'ggplot2'

Provides plotting utilities supporting packages in the 'easystats' ecosystem (<https://github.com/easystats/easystats>) and some extra themes, geoms, and scales for 'ggplot2'. Color scales are based on <https://materialui.co/>. References: Lüdecke et al. (2021) <doi:10.21105/joss.03393>.

Maintained by Indrajeet Patil. Last updated 18 days ago.

data-visualization easystats ggplot2 hacktoberfest plotting see statistics visualisation visualization

902 stars 13.22 score 2.0k scripts 3 dependents

easystats

easystats:Framework for Easy Statistical Modeling, Visualization, and Reporting

A meta-package that installs and loads a set of packages from 'easystats' ecosystem in a single step. This collection of packages provide a unifying and consistent framework for statistical modeling, visualization, and reporting. Additionally, it provides articles targeted at instructors for teaching 'easystats', and a dashboard targeted at new R users for easily conducting statistical analysis by accessing summary results, model fit indices, and visualizations with minimal programming.

Maintained by Daniel Lüdecke. Last updated 25 days ago.

dataanalytics datascience easystats hacktoberfest models performance-metrics regression-models statistics

1.1k stars 13.01 score 1.8k scripts 1 dependents

bioc

Spectra:Spectra Infrastructure for Mass Spectrometry Data

The Spectra package defines an efficient infrastructure for storing and handling mass spectrometry spectra and functionality to subset, process, visualize and compare spectra data. It provides different implementations (backends) to store mass spectrometry data. These comprise backends tuned for fast data access and processing and backends for very large data sets ensuring a small memory footprint.

Maintained by RforMassSpectrometry Package Maintainer. Last updated 22 days ago.

infrastructure proteomics massspectrometry metabolomics bioconductor hacktoberfest mass-spectrometry

41 stars 13.01 score 254 scripts 35 dependents

johncoene

waiter:Loading Screen for 'Shiny'

Full screen and partial loading screens for 'Shiny' with spinners, progress bars, and notifications.

Maintained by John Coene. Last updated 12 months ago.

hacktoberfest shiny

496 stars 12.87 score 702 scripts 68 dependents

bioc

iSEE:Interactive SummarizedExperiment Explorer

Create an interactive Shiny-based graphical user interface for exploring data stored in SummarizedExperiment objects, including row- and column-level metadata. The interface supports transmission of selections between plots and tables, code tracking, interactive tours, interactive or programmatic initialization, preservation of app state, and extensibility to new panel types via S4 classes. Special attention is given to single-cell data in a SingleCellExperiment object with visualization of dimensionality reduction results.

Maintained by Kevin Rue-Albrecht. Last updated 23 days ago.

cellbasedassays clustering dimensionreduction featureextraction geneexpression gui immunooncology shinyapps singlecell transcription transcriptomics visualization dimension-reduction feature-extraction gene-expression hacktoberfest human-cell-atlas shiny single-cell

225 stars 12.86 score 380 scripts 9 dependents

easystats

modelbased:Estimation of Model-Based Predictions, Contrasts and Means

Implements a general interface for model-based estimations for a wide variety of models, used in the computation of marginal means, contrast analysis and predictions. For a list of supported models, see 'insight::supported_models()'.

Maintained by Dominique Makowski. Last updated 4 hours ago.

contrast-analysis contrasts easystats estimate ggplot2 hacktoberfest marginal marginal-effects means predict

244 stars 12.44 score 315 scripts 4 dependents

johncoene

echarts4r:Create Interactive Graphs with 'Echarts JavaScript' Version 5

Easily create interactive charts by leveraging the 'Echarts Javascript' library which includes 36 chart types, themes, 'Shiny' proxies and animations.

Maintained by David Munoz Tord. Last updated 15 days ago.

echarts hacktoberfest htmlwidget htmlwidgets visualization

603 stars 11.45 score 1.3k scripts 11 dependents

eddelbuettel

RcppGSL:'Rcpp' Integration for 'GNU GSL' Vectors and Matrices

'Rcpp' integration for 'GNU GSL' vectors and matrices The 'GNU Scientific Library' (or 'GSL') is a collection of numerical routines for scientific computing. It is particularly useful for C and C++ programs as it provides a standard C interface to a wide range of mathematical routines. There are over 1000 functions in total with an extensive test suite. The 'RcppGSL' package provides an easy-to-use interface between 'GSL' data structures and R using concepts from 'Rcpp' which is itself a package that eases the interfaces between R and C++. This package also serves as a prime example of how to build a package that uses 'Rcpp' to connect to another third-party library. The 'autoconf' script, 'inline' plugin and example package can all be used as a stanza to write a similar package against another library.

Maintained by Dirk Eddelbuettel. Last updated 5 months ago.

c-plus-plus gnu-gsl hacktoberfest rcpp gsl cpp

31 stars 10.89 score 88 scripts 116 dependents

thinkr-open

attachment:Deal with Dependencies

Manage dependencies during package development. This can retrieve all dependencies that are used in ".R" files in the "R/" directory, in ".Rmd" files in "vignettes/" directory and in 'roxygen2' documentation of functions. There is a function to update the "DESCRIPTION" file of your package with 'CRAN' packages or any other remote package. All functions to retrieve dependencies of ".R" scripts and ".Rmd" or ".qmd" files can be used independently of a package development.

Maintained by Vincent Guyader. Last updated 15 days ago.

hacktoberfest

110 stars 10.44 score 48 scripts 5 dependents

datawookie

emayili:Send Email Messages

A light, simple tool for sending emails with minimal dependencies.

Maintained by Andrew B. Collier. Last updated 2 months ago.

hacktoberfest

180 stars 9.59 score 95 scripts 3 dependents

thinkr-open

fusen:Build a Package from Rmarkdown Files

Use Rmarkdown First method to build your package. Start your package with documentation, functions, examples and tests in the same unique file. Everything can be set from the Rmarkdown template file provided in your project, then inflated as a package. Inflating the template copies the relevant chunks and sections in the appropriate files required for package development.

Maintained by Vincent Guyader. Last updated 2 months ago.

hacktoberfest rmd-first

163 stars 9.45 score 35 scripts

cbielow

PTXQC:Quality Report Generation for MaxQuant and mzTab Results

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool). Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format. Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) <doi:10.1021/acs.jproteome.5b00780>.

Maintained by Chris Bielow. Last updated 1 years ago.

drag-and-drop hacktoberfest heatmap match-between-runs maxquant metric mztab openms proteomics quality-control quality-metrics report

42 stars 9.35 score 105 scripts 1 dependents

bmewing

mgsub:Safe, Multiple, Simultaneous String Substitution

Designed to enable simultaneous substitution in strings in a safe fashion. Safe means it does not rely on placeholders (which can cause errors in same length matches).

Maintained by Mark Ewing. Last updated 1 months ago.

hacktoberfest

14 stars 9.34 score 270 scripts 26 dependents

nhs-r-community

NHSRdatasets:NHS and Healthcare-Related Data for Education and Training

Free United Kingdom National Health Service (NHS) and other healthcare, or population health-related data for education and training purposes. This package contains synthetic data based on real healthcare datasets, or cuts of open-licenced official data. This package exists to support skills development in the NHS-R community: <https://nhsrcommunity.com/>.

Maintained by Zoë Turner. Last updated 4 months ago.

dataset hacktoberfest

70 stars 9.26 score 166 scripts

pachadotdev

cpp11armadillo:An 'Armadillo' Interface

Provides function declarations and inline function definitions that facilitate communication between R and the 'Armadillo' 'C++' library for linear algebra and scientific computing. This implementation is detailed in Vargas Sepulveda and Schneider Malamud (2024) <doi:10.1016/j.softx.2025.102087>.

Maintained by Mauricio Vargas Sepulveda. Last updated 8 days ago.

armadillo cpp cpp11 hacktoberfest linear-algebra

10 stars 9.25 score 1 scripts 16 dependents

psychmeta

psychmeta:Psychometric Meta-Analysis Toolkit

Tools for computing bare-bones and psychometric meta-analyses and for generating psychometric data for use in meta-analysis simulations. Supports bare-bones, individual-correction, and artifact-distribution methods for meta-analyzing correlations and d values. Includes tools for converting effect sizes, computing sporadic artifact corrections, reshaping meta-analytic databases, computing multivariate corrections for range variation, and more. Bugs can be reported to <https://github.com/psychmeta/psychmeta/issues> or <issues@psychmeta.com>.

Maintained by Jeffrey A. Dahlke. Last updated 9 months ago.

hacktoberfest meta-analysis psychology psychometric psychometrics

59 stars 8.21 score 151 scripts

johncoene

cicerone:Provide Tours of 'Shiny' Applications

Provide step by step guided tours of 'Shiny' applications.

Maintained by John Coene. Last updated 2 months ago.

hacktoberfest shiny tour

190 stars 7.84 score 68 scripts 5 dependents

thinkr-open

remedy:'RStudio' Addins to Simplify 'Markdown' Writing

An 'RStudio' addin providing shortcuts for writing in 'Markdown'. This package provides a series of functions that allow the user to be more efficient when using 'Markdown'. For example, you can select a word, and put it in bold or in italics, or change the alignment of elements inside you Rmd. The idea is to map all the functionalities from 'remedy' on keyboard shortcuts, so that it provides an interface close to what you can find in any other text editor.

Maintained by Colin Fay. Last updated 5 years ago.

hacktoberfest

452 stars 7.83 score 50 scripts

burgerga

shinyTime:A Time Input Widget for Shiny

Provides a time input widget for Shiny. This widget allows intuitive time input in the '[hh]:[mm]:[ss]' or '[hh]:[mm]' (24H and 12H) format by using a separate numeric input for each time component. The interface with R uses date-time objects. See the project page for more information and examples.

Maintained by Gerhard Burger. Last updated 11 months ago.

hacktoberfest shiny timepicker widget

28 stars 7.81 score 166 scripts 13 dependents

curso-r

auth0:Authentication in Shiny with Auth0

Uses Auth0 API (see <https://auth0.com> for more information) to use a simple authentication system. It provides tools to log in and out a shiny application using social networks or a list of e-mails.

Maintained by Julio Trecenti. Last updated 1 years ago.

auth0 authentication hacktoberfest shiny

156 stars 7.79 score 88 scripts

molgenis

MolgenisArmadillo:Armadillo Client for the Armadillo Service

A set of functions to manage data shared on a 'MOLGENIS Armadillo' server.

Maintained by Mariska Slofstra. Last updated 29 days ago.

hacktoberfest

3 stars 7.51 score 28 scripts

bioc

iSEEu:iSEE Universe

iSEEu (the iSEE universe) contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels, or modes allowing easy configuration of iSEE applications.

Maintained by Kevin Rue-Albrecht. Last updated 5 months ago.

immunooncology visualization gui dimensionreduction featureextraction clustering transcription geneexpression transcriptomics singlecell cellbasedassays hacktoberfest

9 stars 7.15 score 35 scripts 1 dependents

r4fun

keys:Keyboard Shortcuts for 'shiny'

Assign and listen to keyboard shortcuts in 'shiny' using the 'Mousetrap' Javascript library.

Maintained by Tyler Littlefield. Last updated 3 years ago.

hacktoberfest hotkeys keyboard-shortcuts mousetrap

45 stars 6.99 score 36 scripts 4 dependents

lvclark

polyRAD:Genotype Calling with Uncertainty from Sequencing Data in Polyploids and Diploids

Read depth data from genotyping-by-sequencing (GBS) or restriction site-associated DNA sequencing (RAD-seq) are imported and used to make Bayesian probability estimates of genotypes in polyploids or diploids. The genotype probabilities, posterior mean genotypes, or most probable genotypes can then be exported for downstream analysis. 'polyRAD' is described by Clark et al. (2019) <doi:10.1534/g3.118.200913>, and the Hind/He statistic for marker filtering is described by Clark et al. (2022) <doi:10.1186/s12859-022-04635-9>. A variant calling pipeline for highly duplicated genomes is also included and is described by Clark et al. (2020, Version 1) <doi:10.1101/2020.01.11.902890>.

Maintained by Lindsay V. Clark. Last updated 21 days ago.

bioinformatics dna-sequencing genotype-likelihoods genotyping-by-sequencing hacktoberfest rad-seq rad-sequencing snp-genotyping cpp

28 stars 6.98 score 85 scripts

thinkr-open

thinkr:Tools for Cleaning Up Messy Files

Some tools for cleaning up messy 'Excel' files to be suitable for R. People who have been working with 'Excel' for years built more or less complicated sheets with names, characters, formats that are not homogeneous. To be able to use them in R nowadays, we built a set of functions that will avoid the majority of importation problems and keep all the data at best.

Maintained by Vincent Guyader. Last updated 3 years ago.

hacktoberfest thinkr-not-maintained

29 stars 6.96 score 45 scripts

thinkr-open

togglr:'Toggl.com' Api for 'Rstudio'

Use the <https://toggl.com> time tracker api through R.

Maintained by Vincent Guyader. Last updated 1 years ago.

hacktoberfest toggl-api toggler

49 stars 6.81 score 33 scripts

jcrodriguez1989

chatgpt:Interface to 'ChatGPT' from R

'OpenAI's 'ChatGPT' <https://chat.openai.com/> coding assistant for 'RStudio'. A set of functions and 'RStudio' addins that aim to help the R developer in tedious coding tasks.

Maintained by Juan Cruz Rodriguez. Last updated 4 months ago.

assistant chatgpt gpt-3 gpt-4 hacktoberfest llm nlp openai rstatses rstudio rstudio-addin

321 stars 6.81 score 50 scripts

swechhya

excelR:A Wrapper of the 'JavaScript' Library 'jExcel'

An R interface to 'jExcel' library to create web-based interactive tables and spreadsheets compatible with 'Excel' or any other spreadsheet software.

Maintained by Swechhya Bista. Last updated 3 years ago.

hacktoberfest shiny

153 stars 6.62 score 45 scripts 2 dependents

molgenis

DSMolgenisArmadillo:'DataSHIELD' Client for 'MOLGENIS Armadillo'

'DataSHIELD' is an infrastructure and series of R packages that enables the remote and 'non-disclosive' analysis of sensitive research data. This package is the 'DataSHIELD' interface implementation to analyze data shared on a 'MOLGENIS Armadillo' server. 'MOLGENIS Armadillo' is a light-weight 'DataSHIELD' server using a file store and an 'RServe' server.

Maintained by Mariska Slofstra. Last updated 8 months ago.

hacktoberfest

6.54 score 48 scripts

thinkr-open

shinipsum:Lorem-Ipsum-like Helpers for fast Shiny Prototyping

Prototype your shiny apps quickly with these Lorem-Ipsum-like Helpers.

Maintained by Colin Fay. Last updated 1 years ago.

dygraph ggplot golemverse hacktoberfest lorem-ipsum

125 stars 6.45 score 50 scripts 1 dependents

swsoyee

r3dmol:Create Interactive 3D Visualizations of Molecular Data

Create rich and fully interactive 3D visualizations of molecular data. Visualizations can be included in Shiny apps and R markdown documents, or viewed from the R console and 'RStudio' Viewer. 'r3dmol' includes an extensive API to manipulate the visualization after creation, and supports getting data out of the visualization into R. Based on the '3dmol.js' and the 'htmlwidgets' R package.

Maintained by Wei Su. Last updated 1 years ago.

3d computational-biology computational-chemistry hacktoberfest htmlwidgets molecular-graphics molecular-modeling protein protein-structure visualization

90 stars 6.35 score 166 scripts 1 dependents

thinkr-open

fakir:Generate Fake Datasets for Prototyping and Teaching

Create fake datasets that can be used for prototyping and teaching. This package provides a set of functions to generate fake data for a variety of data types, such as dates, addresses, and names. It can be used for prototyping (notably in 'shiny') or as a tool to teach data manipulation and data visualization.

Maintained by Colin Fay. Last updated 7 months ago.

charlatan fake-datasets golemverse hacktoberfest

133 stars 6.24 score 26 scripts

ms-quality-hub

rmzqc:Creation, Reading and Validation of 'mzqc' Files

Reads, writes and validates 'mzQC' files. The 'mzQC' format is a standardized file format for the exchange, transmission, and archiving of quality metrics derived from biological mass spectrometry data, as defined by the HUPO-PSI (Human Proteome Organisation - Proteomics Standards Initiative) Quality Control working group. See <https://hupo-psi.github.io/mzQC/> for details.

Maintained by Chris Bielow. Last updated 20 hours ago.

hacktoberfest mass-spectrometry mzqc quality-control

3 stars 6.21 score 10 scripts 3 dependents

forkonlp

N2H4:Handling Methods for Naver News Text Crawling

Provides some functions to get Korean text sample from news articles in Naver which is popular news portal service <https://news.naver.com/> in Korea.

Maintained by Chanyub Park. Last updated 1 years ago.

crawler crawling getcomments hacktoberfest hacktoberfest2021 korean naver news sort

216 stars 6.11 score 20 scripts

sonatype-nexus-community

oysteR:Scans R Projects for Vulnerable Third Party Dependencies

Collects a list of your third party R packages, and scans them with the 'OSS' Index provided by 'Sonatype', reporting back on any vulnerabilities that are found in the third party packages you use.

Maintained by Colin Gillespie. Last updated 4 years ago.

hacktoberfest

40 stars 6.08 score 6 scripts

ixpantia

ixplorer:Easy DataOps for R Users

Create and view tickets in 'gitea', a self-hosted git service <https://about.gitea.com>, using an 'RStudio' addin, and use helper functions to publish documentation and use git.

Maintained by Frans van Dunne. Last updated 5 months ago.

dataops gitea hacktoberfest

2 stars 5.94 score 5 scripts

rjake

headliner:Compose Sentences to Describe Comparisons

Create dynamic, data-driven text. Given two values, a list of talking points is generated and can be combined using string interpolation. Based on the 'glue' package.

Maintained by Jake Riley. Last updated 2 years ago.

hacktoberfest

43 stars 5.78 score 28 scripts

bioc

iSEEindex:iSEE extension for a landing page to a custom collection of data sets

This package provides an interface to any collection of data sets within a single iSEE web-application. The main functionality of this package is to define a custom landing page allowing app maintainers to list a custom collection of data sets that users can selected from and directly load objects into an iSEE web-application.

Maintained by Kevin Rue-Albrecht. Last updated 5 months ago.

software infrastructure bioconductor hacktoberfest

2 stars 5.65 score 8 scripts

discindo

newscatcheR:Programmatically Collect Normalized News from (Almost) Any Website

Programmatically collect normalized news from (almost) any website. An 'R' clone of the <https://github.com/kotartemiy/newscatcher> 'Python' module.

Maintained by Novica Nakov. Last updated 2 years ago.

hacktoberfest news-sites newscatcher rss-feed tidyrss

30 stars 5.65 score 7 scripts

bioc

iSEEhub:iSEE for the Bioconductor ExperimentHub

This package defines a custom landing page for an iSEE app interfacing with the Bioconductor ExperimentHub. The landing page allows users to browse the ExperimentHub, select a data set, download and cache it, and import it directly into a Bioconductor iSEE app.

Maintained by Kevin Rue-Albrecht. Last updated 5 months ago.

dataimport immunooncology infrastructure shinyapps singlecell software bioconductor bioconductor-package hacktoberfest isee

3 stars 5.56 score 4 scripts

process-analytics

bpmnVisualizationR:Visualize Process Execution Data on 'BPMN' Diagrams

To visualize the execution data of the processes on 'BPMN' (Business Process Model and Notation) diagrams, using overlays, style customization and interactions, with the 'bpmn-visualization' 'TypeScript' library.

Maintained by Celine Souchet. Last updated 2 months ago.

bpmn bpmn-visualization hacktoberfest process-analytics visualization

16 stars 5.51 score 3 scripts

jj

dogesr:Work with the Doges/Dogaresse Dataset

Work with data on Venetian doges and dogaresse and the noble families of the Republic of Venice, and use it for social network analysis, as used in Merelo (2022) <arXiv:2209.07334>.

Maintained by Juan Julián Merelo-Guervós. Last updated 12 months ago.

digital-humanities hacktoberfest

5.50 score 35 scripts

ixpantia

googleErrorReportingR:Send Error Reports to the Google Error Reporting Service API

Send error reports to the Google Error Reporting service <https://cloud.google.com/error-reporting/> and view errors and assign error status in the Google Error Reporting user interface.

Maintained by Frans van Dunné. Last updated 5 months ago.

gcp gcp-error-reporting googlecloudplatform hacktoberfest

7 stars 5.45 score 8 scripts

bioc

iSEEde:iSEE extension for panels related to differential expression analysis

This package contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels or modes facilitating the analysis of differential expression results. This package does not perform differential expression. Instead, it provides methods to embed precomputed differential expression results in a SummarizedExperiment object, in a manner that is compatible with interactive visualisation in iSEE applications.

Maintained by Kevin Rue-Albrecht. Last updated 5 months ago.

software infrastructure differentialexpression bioconductor hacktoberfest iseeu

1 stars 5.38 score 15 scripts

alexanderlynl

safestats:Safe Anytime-Valid Inference

Functions to design and apply tests that are anytime valid. The functions can be used to design hypothesis tests in the prospective/randomised control trial setting or in the observational/retrospective setting. The resulting tests remain valid under both optional stopping and optional continuation. The current version includes safe t-tests and safe tests of two proportions. For details on the theory of safe tests, see Grunwald, de Heide and Koolen (2019) "Safe Testing" <arXiv:1906.07801>, for details on safe logrank tests see ter Schure, Perez-Ortiz, Ly and Grunwald (2020) "The Safe Logrank Test: Error Control under Continuous Monitoring with Unlimited Horizon" <arXiv:2011.06931v3> and Turner, Ly and Grunwald (2021) "Safe Tests and Always-Valid Confidence Intervals for contingency tables and beyond" <arXiv:2106.02693> for details on safe contingency table tests.

Maintained by Alexander Ly. Last updated 2 years ago.

evalues hacktoberfest safe-testing statistics

6 stars 5.23 score 14 scripts

modal-inria

Rankcluster:Model-Based Clustering for Multivariate Partial Ranking Data

Implementation of a model-based clustering algorithm for ranking data (C. Biernacki, J. Jacques (2013) <doi:10.1016/j.csda.2012.08.008>). Multivariate rankings as well as partial rankings are taken into account. This algorithm is based on an extension of the Insertion Sorting Rank (ISR) model for ranking data, which is a meaningful and effective model parametrized by a position parameter (the modal ranking, quoted by mu) and a dispersion parameter (quoted by pi). The heterogeneity of the rank population is modelled by a mixture of ISR, whereas conditional independence assumption is considered for multivariate rankings.

Maintained by Quentin Grimonprez. Last updated 2 years ago.

clustering hacktoberfest rank cpp

1 stars 5.05 score 37 scripts 1 dependents

bioc

iSEEpathways:iSEE extension for panels related to pathway analysis

This package contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels or modes facilitating the analysis of pathway analysis results. This package does not perform pathway analysis. Instead, it provides methods to embed precomputed pathway analysis results in a SummarizedExperiment object, in a manner that is compatible with interactive visualisation in iSEE applications.

Maintained by Kevin Rue-Albrecht. Last updated 5 months ago.

software infrastructure differentialexpression geneexpression gui visualization pathways genesetenrichment go shinyapps bioconductor hacktoberfest isee iseeu

1 stars 4.95 score 10 scripts

swechhya

shinyanimate:Animation for 'shiny' Elements

An extension of 'animate.css' that allows user to easily add animations to any UI element in 'shiny' app using the elements id.

Maintained by Swechhya Bista. Last updated 1 years ago.

hacktoberfest shiny

39 stars 4.85 score 36 scripts

alan-turing-institute

PosteriorBootstrap:Non-Parametric Sampling with Parallel Monte Carlo

An implementation of a non-parametric statistical model using a parallelised Monte Carlo sampling scheme. The method implemented in this package allows non-parametric inference to be regularized for small sample sizes, while also being more accurate than approximations such as variational Bayes. The concentration parameter is an effective sample size parameter, determining the faith we have in the model versus the data. When the concentration is low, the samples are close to the exact Bayesian logistic regression method; when the concentration is high, the samples are close to the simplified variational Bayes logistic regression. The method is described in full in the paper Lyddon, Walker, and Holmes (2018), "Nonparametric learning from Bayesian models with randomized objective functions" <arXiv:1806.11544>.

Maintained by James Robinson. Last updated 2 years ago.

hacktoberfest hut23 hut23-306

4 stars 4.78 score

eddelbuettel

prrd:Parallel Runs of Reverse Depends

Reverse depends for a given package are queued such that multiple workers can run the reverse-dependency tests in parallel.

Maintained by Dirk Eddelbuettel. Last updated 1 months ago.

hacktoberfest reverse-dependencies

12 stars 4.73 score 2 scripts

mrchypark

sendgridr:Mail Sender Using 'Sendgrid' Service

Send email using 'Sendgrid' <https://sendgrid.com/en-us> mail API(v3) <https://docs.sendgrid.com/api-reference/how-to-use-the-sendgrid-v3-api/authentication>.

Maintained by Chanyub Park. Last updated 1 years ago.

hacktoberfest hacktoberfest2021 mail mailer sendgrid

23 stars 4.66 score 10 scripts

kkulma

intensegRid:R Wrapper for the Carbon Intensity API

Electricity is not made equal and it vary in its carbon footprint (or carbon intensity) depending on its source. This package enables to access and query data provided by the Carbon Intensity API (<https://carbonintensity.org.uk/>). National Grid’s Carbon Intensity API provides an indicative trend of regional carbon intensity of the electricity system in Great Britain.

Maintained by Kasia Kulma. Last updated 2 years ago.

carbon-api carbon-emissions carbon-intensity climate-change hacktoberfest

9 stars 4.65 score 7 scripts

mrchypark

multilinguer:Gentle Language Installer for R User

Provides install functions of other languages such as 'java', 'python'.

Maintained by Chanyub Park. Last updated 3 years ago.

hacktoberfest hacktoberfest2021

7 stars 4.63 score 121 scripts

bioc

brendaDb:The BRENDA Enzyme Database

R interface for importing and analyzing enzyme information from the BRENDA database.

Maintained by Yi Zhou. Last updated 5 months ago.

thirdpartyclient annotation dataimport brenda database enzyme hacktoberfest cpp

2 stars 4.60 score 4 scripts

modal-inria

cfda:Categorical Functional Data Analysis

Package for the analysis of categorical functional data. The main purpose is to compute an encoding (real functional variable) for each state <doi:10.3390/math9233074>. It also provides functions to perform basic statistical analysis on categorical functional data.

Maintained by Quentin Grimonprez. Last updated 2 months ago.

categorical-data functional-data-analysis hacktoberfest

4 stars 4.60 score 3 scripts

pachadotdev

cpp11eigen:An 'Eigen' Interface

Provides function declarations and inline function definitions that facilitate communication between R and the 'Eigen' 'C++' library for linear algebra and scientific computing.

Maintained by Mauricio Vargas Sepulveda. Last updated 5 months ago.

cpp cpp11 eigen hacktoberfest linear-algebra

2 stars 4.60 score 1 scripts

mrchypark

tqk:Get Financial Data in Korea

Enables the acquisition of Korean financial market data, designed to integrate seamlessly with the 'tidyquant' package.

Maintained by Chanyub Park. Last updated 3 months ago.

hacktoberfest hacktoberfest2021 korea-stock quant stock tidyquant tidyverse

61 stars 4.56 score 12 scripts

ixpantia

gitear:Client to the 'gitea' API

'Gitea' is a community managed, lightweight code hosting solution were projects and their respective git repositories can be managed <https://gitea.io>. This package gives an interface to the 'Gitea' API to access and manage repositories, issues and organizations directly in R.

Maintained by Frans van Dunné. Last updated 1 years ago.

gitea hacktoberfest

5 stars 4.48 score 7 scripts 1 dependents

ixpantia

lacrmr:Connect to the 'Less Annoying CRM' API

Connect to the 'Less Annoying CRM' API with ease to get your crm data in a clean and tidy format. 'Less Annoying CRM' is a simple CRM built for small businesses, more information is available on their website <https://www.lessannoyingcrm.com/>.

Maintained by Frans van Dunné. Last updated 1 years ago.

crm hacktoberfest less-annoying-crm

2 stars 4.48 score 4 scripts

datawookie

clockify:A Wrapper for the 'Clockify' API

A wrapper for the Clockify API <https://docs.clockify.me/>, making it possible to query, insert and update time keeping data.

Maintained by Andrew B. Collier. Last updated 10 months ago.

hacktoberfest

2 stars 3.95 score 6 scripts

dgkf

parttime:Partial Datetime Handling

Datetimes and timestamps are invariably an imprecise notation, with any partial representation implying some amount of uncertainty. To handle this, 'parttime' provides classes for embedding partial missingness as a central part of its datetime classes. This central feature allows for more ergonomic use of datetimes for challenging datetime computation, including calculations of overlapping date ranges, imputations, and more thoughtful handling of ambiguity that arises from uncertain time zones. This package was developed first and foremost with pharmaceutical applications in mind, but aims to be agnostic to application to accommodate general use cases just as conveniently.

Maintained by Doug Kelkhoff. Last updated 1 years ago.

hacktoberfest

17 stars 3.93 score 3 scripts

thinkr-open

inca3:Donnees De L'Etude INCA 3

Données de consommations et habitudes alimentaires de l'étude INCA 3. Carine Dubuisson, Ariane Dufour, Sandrine Carrillo, Peggy Drouillet-Pinard, Sabrina Havard, Jean-Luc Volatier (2019). The Third French Individual and National Food Consumption (INCA3) Survey 2014-2015: method, design and participation rate in the framework of a European harmonization process. Public Health Nutrition: 22(4), 584–600. (doi:10.1017/S1368980018002896).

Maintained by Vincent Guyader. Last updated 3 years ago.

hacktoberfest thinkr-not-maintained

5 stars 3.88 score 4 scripts

matt-dray

quartostamp:RStudio Addin to Insert Quarto Helpers

An RStudio Addin to insert ('stamp') pre-written classes and divs into your Quarto documents.

Maintained by Matt Dray. Last updated 2 years ago.

hacktoberfest quarto rstudio-addin

59 stars 3.47 score

vandenman

DstarM:Analyze Two Choice Reaction Time Data with the D*M Method

A collection of functions to estimate parameters of a diffusion model via a D*M analysis. Build in models are: the Ratcliff diffusion model, the RWiener diffusion model, and Linear Ballistic Accumulator models. Custom models functions can be specified as long as they have a density function.

Maintained by Don van den Bergh. Last updated 3 years ago.

hacktoberfest openblas cpp

3 stars 3.41 score 17 scripts

mrchypark

elbird:Blazing Fast Morphological Analyzer Based on Kiwi(Korean Intelligent Word Identifier)

This is the R wrapper package Kiwi(Korean Intelligent Word Identifier), a blazing fast speed morphological analyzer for Korean. It supports configuration of user dictionary and detection of unregistered nouns based on frequency.

Maintained by Chanyub Park. Last updated 2 years ago.

analyzer hacktoberfest hacktoberfest2021 morphological cpp

34 stars 3.23 score 9 scripts

bmewing

gpx:Process GPX Files into R Data Structures

Process open standard GPX files into data.frames for further use and analysis in R.

Maintained by Mark Ewing. Last updated 3 years ago.

hacktoberfest hacktoberfest2021

1 stars 3.08 score 24 scripts

carpentries

glosario:A Multilingual Glossary

A glossary of data science terms in multiple languages and usable from multiple languages.

Maintained by Greg Wilson. Last updated 2 years ago.

glosario hacktoberfest

6 stars 2.78 score 9 scripts