Showing 13 of total 13 results (show query)
bioc
AnVILGCP:The GCP R Client for the AnVIL
The package provides a set of functions to interact with the Google Cloud Platform (GCP) services on the AnVIL platform. The package is designed to work with the AnVIL package. User-level interaction with this package should be minimal.
Maintained by Marcel Ramos. Last updated 2 months ago.
softwareinfrastructurethirdpartyclientdataimport
17.7 match 5.66 score 27 scripts 3 dependents
ixpantia
googleErrorReportingR:Send Error Reports to the Google Error Reporting Service API
Send error reports to the Google Error Reporting service <https://cloud.google.com/error-reporting/> and view errors and assign error status in the Google Error Reporting user interface.
Maintained by Frans van Dunné. Last updated 5 months ago.
gcpgcp-error-reportinggooglecloudplatformhacktoberfest
17.7 match 6 stars 5.38 score 8 scriptsbioc
AnVILWorkflow:Run workflows implemented in Terra/AnVIL workspace
The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The main cloud-based genomics platform deported by the AnVIL project is Terra. The AnVILWorkflow package allows remote access to Terra implemented workflows, enabling end-user to utilize Terra/ AnVIL provided resources - such as data, workflows, and flexible/scalble computing resources - through the conventional R functions.
Maintained by Sehyun Oh. Last updated 27 days ago.
infrastructuresoftwareanvilgcpterraworkflows
11.0 match 6 stars 6.03 score 1 scripts
jinghuazhao
gap:Genetic Analysis Package
As first reported [Zhao, J. H. 2007. "gap: Genetic Analysis Package". J Stat Soft 23(8):1-18. <doi:10.18637/jss.v023.i08>], it is designed as an integrated package for genetic data analysis of both population and family data. Currently, it contains functions for sample size calculations of both population-based and family-based designs, probability of familial disease aggregation, kinship calculation, statistics in linkage analysis, and association analysis involving genetic markers including haplotype analysis with or without environmental covariates. Over years, the package has been developed in-between many projects hence also in line with the name (gap).
Maintained by Jing Hua Zhao. Last updated 16 days ago.
3.3 match 12 stars 11.88 score 448 scripts 16 dependents
samuel-marsh
scCustomize:Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing
Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'. 'scCustomize' aims to provide 1) Customized visualizations for aid in ease of use and to create more aesthetic and functional visuals. 2) Improve speed/reproducibility of common tasks/pieces of code in scRNA-seq analysis with a single or group of functions. For citation please use: Marsh SE (2021) "Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing" <doi:10.5281/zenodo.5706430> RRID:SCR_024675.
Maintained by Samuel Marsh. Last updated 3 months ago.
customizationggplot2scrna-seqseuratsingle-cellsingle-cell-genomicssingle-cell-rna-seqvisualization
3.5 match 242 stars 8.75 score 1.1k scripts
ropensci
targets:Dynamic Function-Oriented 'Make'-Like Declarative Pipelines
Pipeline tools coordinate the pieces of computationally demanding analysis projects. The 'targets' package is a 'Make'-like pipeline tool for statistics and data science in R. The package skips costly runtime for tasks that are already up to date, orchestrates the necessary computation with implicit parallel computing, and abstracts files as R objects. If all the current output matches the current upstream code and data, then the whole pipeline is up to date, and the results are more trustworthy than otherwise. The methodology in this package borrows from GNU 'Make' (2015, ISBN:978-9881443519) and 'drake' (2018, <doi:10.21105/joss.00550>).
Maintained by William Michael Landau. Last updated 2 days ago.
data-sciencehigh-performance-computingmakepeer-reviewedpipeliner-targetopiareproducibilityreproducible-researchtargetsworkflow
1.7 match 973 stars 15.20 score 4.6k scripts 22 dependents
andodet
googlePubsubR:R Interface for Google 'Cloud Pub/Sub' REST API
Provides an easy to use interface to the 'Google Pub/Sub' REST API <https://cloud.google.com/pubsub/docs/reference/rest>.
Maintained by Andrea Dodet. Last updated 2 years ago.
4.0 match 10 stars 5.34 score 22 scripts
r-spatial
rgee:R Bindings for Calling the 'Earth Engine' API
Earth Engine <https://earthengine.google.com/> client library for R. All of the 'Earth Engine' API classes, modules, and functions are made available. Additional functions implemented include importing (exporting) of Earth Engine spatial objects, extraction of time series, interactive map display, assets management interface, and metadata display. See <https://r-spatial.github.io/rgee/> for further details.
Maintained by Cesar Aybar. Last updated 4 days ago.
earth-engineearthenginegoogle-earth-enginegoogleearthenginespatial-analysisspatial-data
1.1 match 715 stars 13.77 score 1.9k scripts 3 dependents
mikejohnson51
nwmTools:nwmTools
Tools for working with operational and historic National Water Model Output.
Maintained by Mike Johnson. Last updated 3 months ago.
3.8 match 19 stars 3.06 score 12 scriptsbioc
AnVILBilling:Provide functions to retrieve and report on usage expenses in NHGRI AnVIL (anvilproject.org).
AnVILBilling helps monitor AnVIL-related costs in R, using queries to a BigQuery table to which costs are exported daily. Functions are defined to help categorize tasks and associated expenditures, and to visualize and explore expense profiles over time. This package will be expanded to help users estimate costs for specific task sets.
Maintained by Vince Carey. Last updated 5 months ago.
1.8 match 4.30 score 5 scripts
bioc
AnVILBase:Generic functions for interacting with the AnVIL ecosystem
Provides generic functions for interacting with the AnVIL ecosystem. Packages that use either GCP or Azure in AnVIL are built on top of AnVILBase. Extension packages will provide methods for interacting with other cloud providers.
Maintained by Marcel Ramos. Last updated 5 months ago.
0.5 match 6.68 score 70 scripts 19 dependents
florian-laroumagne
previsionio:'Prevision.io' R SDK
For working with the 'Prevision.io' AI model management platform's API <https://prevision.io/>.
Maintained by Florian Laroumagne. Last updated 3 years ago.
1.5 match 1.00 score 1 scripts