Showing 5 of total 5 results (show query)
bioc
iSEEu:iSEE Universe
iSEEu (the iSEE universe) contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels, or modes allowing easy configuration of iSEE applications.
Maintained by Kevin Rue-Albrecht. Last updated 5 months ago.
immunooncologyvisualizationguidimensionreductionfeatureextractionclusteringtranscriptiongeneexpressiontranscriptomicssinglecellcellbasedassayshacktoberfest
56.8 match 9 stars 7.15 score 35 scripts 1 dependentsbioc
iSEEhex:iSEE extension for summarising data points in hexagonal bins
This package provides panels summarising data points in hexagonal bins for `iSEE`. It is part of `iSEEu`, the iSEE universe of panels that extend the `iSEE` package.
Maintained by Kevin Rue-Albrecht. Last updated 5 months ago.
softwareinfrastructurebioconductoriseeushiny-r
11.5 match 5.38 score 7 scripts 2 dependentsbioc
iSEEde:iSEE extension for panels related to differential expression analysis
This package contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels or modes facilitating the analysis of differential expression results. This package does not perform differential expression. Instead, it provides methods to embed precomputed differential expression results in a SummarizedExperiment object, in a manner that is compatible with interactive visualisation in iSEE applications.
Maintained by Kevin Rue-Albrecht. Last updated 4 months ago.
softwareinfrastructuredifferentialexpressionbioconductorhacktoberfestiseeu
11.0 match 1 stars 5.38 score 15 scriptsbioc
iSEEpathways:iSEE extension for panels related to pathway analysis
This package contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels or modes facilitating the analysis of pathway analysis results. This package does not perform pathway analysis. Instead, it provides methods to embed precomputed pathway analysis results in a SummarizedExperiment object, in a manner that is compatible with interactive visualisation in iSEE applications.
Maintained by Kevin Rue-Albrecht. Last updated 5 months ago.
softwareinfrastructuredifferentialexpressiongeneexpressionguivisualizationpathwaysgenesetenrichmentgoshinyappsbioconductorhacktoberfestiseeiseeu
11.0 match 1 stars 4.95 score 10 scriptsbioc
iSEEfier:Streamlining the creation of initial states for starting an iSEE instance
iSEEfier provides a set of functionality to quickly and intuitively create, inspect, and combine initial configuration objects. These can be conveniently passed in a straightforward manner to the function call to launch iSEE() with the specified configuration. This package currently works seamlessly with the sets of panels provided by the iSEE and iSEEu packages, but can be extended to accommodate the usage of any custom panel (e.g. from iSEEde, iSEEpathways, or any panel developed independently by the user).
Maintained by Najla Abassi. Last updated 5 months ago.
cellbasedassaysclusteringdimensionreductionfeatureextractionguigeneexpressionimmunooncologyshinyappssinglecellsoftwaretranscriptiontranscriptomicsvisualization
0.5 match 4.90 score 2 scripts