Showing 200 of total 457 results (show query)

rstudio

rmarkdown:Dynamic Documents for R

Convert R Markdown documents into a variety of formats.

Maintained by Yihui Xie. Last updated 4 months ago.

literate-programmingmarkdownpandocrmarkdown

13.0 match 2.9k stars 21.79 score 14k scripts 3.7k dependents

ggobi

tourr:Tour Methods for Multivariate Data Visualisation

Implements geodesic interpolation and basis generation functions that allow you to create new tour methods from R.

Maintained by Dianne Cook. Last updated 18 days ago.

10.7 match 65 stars 11.17 score 426 scripts 9 dependents

rstudio

htmltools:Tools for HTML

Tools for HTML generation and output.

Maintained by Carson Sievert. Last updated 10 months ago.

5.9 match 218 stars 17.61 score 10k scripts 4.5k dependents

ramnathv

htmlwidgets:HTML Widgets for R

A framework for creating HTML widgets that render in various contexts including the R console, 'R Markdown' documents, and 'Shiny' web applications.

Maintained by Carson Sievert. Last updated 1 years ago.

4.1 match 791 stars 19.05 score 7.4k scripts 3.1k dependents

ropensci

babelquarto:Renders a Multilingual Quarto Book

Automate rendering and cross-linking of Quarto books following a prescribed structure.

Maintained by Maëlle Salmon. Last updated 1 months ago.

9.3 match 43 stars 7.52 score 23 scripts 1 dependents

pik-piam

remind2:The REMIND R package (2nd generation)

Contains the REMIND-specific routines for data and model output manipulation.

Maintained by Renato Rodrigues. Last updated 12 hours ago.

6.8 match 8.88 score 161 scripts 5 dependents

shinytree

shinyTree:jsTree Bindings for Shiny

Exposes bindings to jsTree -- a JavaScript library that supports interactive trees -- to enable a rich, editable trees in Shiny.

Maintained by Michael Bell. Last updated 6 months ago.

6.3 match 145 stars 9.20 score 224 scripts 8 dependents

datastorm-open

visNetwork:Network Visualization using 'vis.js' Library

Provides an R interface to the 'vis.js' JavaScript charting library. It allows an interactive visualization of networks.

Maintained by Benoit Thieurmel. Last updated 2 years ago.

3.5 match 549 stars 15.14 score 4.1k scripts 195 dependents

datawookie

emayili:Send Email Messages

A light, simple tool for sending emails with minimal dependencies.

Maintained by Andrew B. Collier. Last updated 1 months ago.

hacktoberfest

5.3 match 180 stars 9.59 score 95 scripts 3 dependents

leonawicz

tabr:Music Notation Syntax, Manipulation, Analysis and Transcription in R

Provides a music notation syntax and a collection of music programming functions for generating, manipulating, organizing, and analyzing musical information in R. Music syntax can be entered directly in character strings, for example to quickly transcribe short pieces of music. The package contains functions for directly performing various mathematical, logical and organizational operations and musical transformations on special object classes that facilitate working with music data and notation. The same music data can be organized in tidy data frames for a familiar and powerful approach to the analysis of large amounts of structured music data. Functions are available for mapping seamlessly between these formats and their representations of musical information. The package also provides an API to 'LilyPond' (<https://lilypond.org/>) for transcribing musical representations in R into tablature ("tabs") and sheet music. 'LilyPond' is open source music engraving software for generating high quality sheet music based on markup syntax. The package generates 'LilyPond' files from R code and can pass them to the 'LilyPond' command line interface to be rendered into sheet music PDF files or inserted into R markdown documents. The package offers nominal MIDI file output support in conjunction with rendering sheet music. The package can read MIDI files and attempts to structure the MIDI data to integrate as best as possible with the data structures and functionality found throughout the package.

Maintained by Matthew Leonawicz. Last updated 6 months ago.

guitar-tablaturelilypondlilypond-apimusic-analysismusic-datamusic-notationmusic-programmingmusic-syntaxmusic-transcriptionsheet-music

6.3 match 132 stars 7.87 score 94 scripts

r-lib

marquee:Markdown Parser and Renderer for R Graphics

Provides the mean to parse and render markdown text with grid along with facilities to define the styling of the text.

Maintained by Thomas Lin Pedersen. Last updated 2 months ago.

cpp

5.3 match 84 stars 8.54 score 28 scripts 1 dependents

bioc

systemPipeR:systemPipeR: Workflow Environment for Data Analysis and Report Generation

systemPipeR is a multipurpose data analysis workflow environment that unifies R with command-line tools. It enables scientists to analyze many types of large- or small-scale data on local or distributed computer systems with a high level of reproducibility, scalability and portability. At its core is a command-line interface (CLI) that adopts the Common Workflow Language (CWL). This design allows users to choose for each analysis step the optimal R or command-line software. It supports both end-to-end and partial execution of workflows with built-in restart functionalities. Efficient management of complex analysis tasks is accomplished by a flexible workflow control container class. Handling of large numbers of input samples and experimental designs is facilitated by consistent sample annotation mechanisms. As a multi-purpose workflow toolkit, systemPipeR enables users to run existing workflows, customize them or design entirely new ones while taking advantage of widely adopted data structures within the Bioconductor ecosystem. Another important core functionality is the generation of reproducible scientific analysis and technical reports. For result interpretation, systemPipeR offers a wide range of plotting functionality, while an associated Shiny App offers many useful functionalities for interactive result exploration. The vignettes linked from this page include (1) a general introduction, (2) a description of technical details, and (3) a collection of workflow templates.

Maintained by Thomas Girke. Last updated 5 months ago.

geneticsinfrastructuredataimportsequencingrnaseqriboseqchipseqmethylseqsnpgeneexpressioncoveragegenesetenrichmentalignmentqualitycontrolimmunooncologyreportwritingworkflowstepworkflowmanagement

3.9 match 53 stars 11.56 score 344 scripts 3 dependents

coolbutuseless

tickle:Easily Build Tcl/Tk UIs

Wrap tcltk to make GUI creation easier.

Maintained by mikefc. Last updated 3 years ago.

7.5 match 125 stars 5.88 score 11 scripts

jrosell

ambhtmx:ambhtmx

Build a Full-stack R App with ambiorix and htmx.

Maintained by Jordi Rosell. Last updated 6 months ago.

10.8 match 26 stars 3.74 score 14 scripts

skranz

rmdtools:Tools for RMarkdown

Tools for RMarkdown

Maintained by Sebastian Kranz. Last updated 4 years ago.

21.3 match 1 stars 1.78 score 6 scripts 2 dependents

quarto-dev

quarto:R Interface to 'Quarto' Markdown Publishing System

Convert R Markdown documents and 'Jupyter' notebooks to a variety of output formats using 'Quarto'.

Maintained by Christophe Dervieux. Last updated 6 hours ago.

2.3 match 147 stars 14.98 score 1.3k scripts 36 dependents

thinkr-open

lozen:Management tools for missions

Management tools for missions (internal and external). Includes weekly, GL projects, etc.

Maintained by Sébastien Rochette. Last updated 12 months ago.

experimental

5.9 match 7 stars 5.42 score 14 scripts

alanarnholt

BSDA:Basic Statistics and Data Analysis

Data sets for book "Basic Statistics and Data Analysis" by Larry J. Kitchens.

Maintained by Alan T. Arnholt. Last updated 2 years ago.

3.3 match 7 stars 9.11 score 1.3k scripts 6 dependents

devopifex

g2r:Interactive Grammar of Graphics

Interactive grammar of graphics.

Maintained by John Coene. Last updated 3 years ago.

visualization

6.6 match 119 stars 4.53 score 57 scripts

appsilon

shiny.info:'shiny' Info

Displays simple diagnostic information of the 'shiny' project in the user interface of the app.

Maintained by Jakub Nowicki. Last updated 11 months ago.

rhinoverseshiny

4.4 match 61 stars 6.73 score 25 scripts

bioc

Biobase:Biobase: Base functions for Bioconductor

Functions that are needed by many other packages or which replace R functions.

Maintained by Bioconductor Package Maintainer. Last updated 5 months ago.

infrastructurebioconductor-packagecore-package

1.8 match 9 stars 16.45 score 6.6k scripts 1.8k dependents

bupaverse

processmapR:Construct Process Maps Using Event Data

Visualize event logs using directed graphs, i.e. process maps. Part of the 'bupaR' framework.

Maintained by Gert Janssenswillen. Last updated 7 months ago.

cpp

3.8 match 9 stars 7.70 score 169 scripts 3 dependents

bioc

PDATK:Pancreatic Ductal Adenocarcinoma Tool-Kit

Pancreatic ductal adenocarcinoma (PDA) has a relatively poor prognosis and is one of the most lethal cancers. Molecular classification of gene expression profiles holds the potential to identify meaningful subtypes which can inform therapeutic strategy in the clinical setting. The Pancreatic Cancer Adenocarcinoma Tool-Kit (PDATK) provides an S4 class-based interface for performing unsupervised subtype discovery, cross-cohort meta-clustering, gene-expression-based classification, and subsequent survival analysis to identify prognostically useful subtypes in pancreatic cancer and beyond. Two novel methods, Consensus Subtypes in Pancreatic Cancer (CSPC) and Pancreatic Cancer Overall Survival Predictor (PCOSP) are included for consensus-based meta-clustering and overall-survival prediction, respectively. Additionally, four published subtype classifiers and three published prognostic gene signatures are included to allow users to easily recreate published results, apply existing classifiers to new data, and benchmark the relative performance of new methods. The use of existing Bioconductor classes as input to all PDATK classes and methods enables integration with existing Bioconductor datasets, including the 21 pancreatic cancer patient cohorts available in the MetaGxPancreas data package. PDATK has been used to replicate results from Sandhu et al (2019) [https://doi.org/10.1200/cci.18.00102] and an additional paper is in the works using CSPC to validate subtypes from the included published classifiers, both of which use the data available in MetaGxPancreas. The inclusion of subtype centroids and prognostic gene signatures from these and other publications will enable researchers and clinicians to classify novel patient gene expression data, allowing the direct clinical application of the classifiers included in PDATK. Overall, PDATK provides a rich set of tools to identify and validate useful prognostic and molecular subtypes based on gene-expression data, benchmark new classifiers against existing ones, and apply discovered classifiers on novel patient data to inform clinical decision making.

Maintained by Benjamin Haibe-Kains. Last updated 5 months ago.

geneexpressionpharmacogeneticspharmacogenomicssoftwareclassificationsurvivalclusteringgeneprediction

6.7 match 1 stars 4.31 score 17 scripts

edwindj

whisker:{{mustache}} for R, logicless templating

Implements 'Mustache' logicless templating.

Maintained by Edwin de Jonge. Last updated 2 years ago.

mustache-templates

2.3 match 212 stars 12.74 score 241 scripts 551 dependents

r-lib

profvis:Interactive Visualizations for Profiling R Code

Interactive visualizations for profiling R code.

Maintained by Hadley Wickham. Last updated 6 months ago.

1.8 match 310 stars 15.63 score 1.3k scripts 152 dependents

trestletech

shinyAce:Ace Editor Bindings for Shiny

Ace editor bindings to enable a rich text editing environment within Shiny.

Maintained by Vincent Nijs. Last updated 1 months ago.

2.3 match 222 stars 11.86 score 388 scripts 64 dependents

mrc-ide

malariasimulation:An individual based model for malaria

Specifies the latest and greatest malaria model.

Maintained by Giovanni Charles. Last updated 29 days ago.

cpp

3.1 match 16 stars 8.17 score 146 scripts

tylermorganwall

raymolecule:Parse and Render Molecular Structures in 3D

Downloads and parses 'SDF' (Structural Description Format) and 'PDB' (Protein Database) files for 3D rendering.

Maintained by Tyler Morgan-Wall. Last updated 1 years ago.

5.5 match 40 stars 4.30 score 7 scripts

coolbutuseless

isocubes:Voxel Rendering with Isometric Cubes

Visualising three-dimensional voxel data.

Maintained by Mike Cheng. Last updated 4 months ago.

4.6 match 67 stars 5.13 score 8 scripts

wviechtb

mathjaxr:Using 'Mathjax' in Rd Files

Provides 'MathJax' and macros to enable its use within Rd files for rendering equations in the HTML help files.

Maintained by Wolfgang Viechtbauer. Last updated 3 days ago.

latexmathjax

2.3 match 47 stars 9.91 score 33 scripts 268 dependents

trelliscope

trelliscope:Create Interactive Multi-Panel Displays

Trelliscope enables interactive exploration of data frames of visualizations.

Maintained by Ryan Hafen. Last updated 7 months ago.

visualization

3.6 match 29 stars 6.43 score 117 scripts

appsilon

shiny.react:Tools for Using React in Shiny

A toolbox for defining React component wrappers which can be used seamlessly in Shiny apps.

Maintained by Jakub Sobolewski. Last updated 10 months ago.

reactrhinoverseshiny

2.3 match 97 stars 10.20 score 83 scripts 4 dependents

merck

r2rtf:Easily Create Production-Ready Rich Text Format (RTF) Tables and Figures

Create production-ready Rich Text Format (RTF) tables and figures with flexible format.

Maintained by Benjamin Wang. Last updated 7 days ago.

2.0 match 78 stars 10.82 score 171 scripts 10 dependents

ambiorix-web

jader:'Jade' Rendering Engine for 'Ambiorix'

'Jade' endering engine for 'Ambiorix'.

Maintained by John Coene. Last updated 5 days ago.

ambiorixwebframework

9.1 match 2 stars 2.30 score

mrcaseb

ggpath:Robust Image Rendering Support for 'ggplot2'

A 'ggplot2' extension that enables robust image grobs in panels and theme elements.

Maintained by Sebastian Carl. Last updated 7 months ago.

3.0 match 38 stars 6.92 score 97 scripts 3 dependents

bioc

graph:graph: A package to handle graph data structures

A package that implements some simple graph handling capabilities.

Maintained by Bioconductor Package Maintainer. Last updated 12 days ago.

graphandnetwork

1.8 match 11.78 score 764 scripts 342 dependents

inbo

protocolhelper:Helper Functions to Manage Protocols

Helper functions to manage INBO protocols.

Maintained by Hans Van Calster. Last updated 6 months ago.

5.1 match 5 stars 3.92 score 55 scripts

bioc

ROntoTools:R Onto-Tools suite

Suite of tools for functional analysis.

Maintained by Sorin Draghici. Last updated 5 months ago.

networkanalysismicroarraygraphsandnetworks

3.4 match 5.10 score 15 scripts 2 dependents

bioc

widgetTools:Creates an interactive tcltk widget

This packages contains tools to support the construction of tcltk widgets

Maintained by Jianhua Zhang. Last updated 5 months ago.

infrastructure

3.4 match 5.04 score 11 scripts 8 dependents