Showing 194 of total 194 results (show query)

r-lib

svglite:An 'SVG' Graphics Device

A graphics device for R that produces 'Scalable Vector Graphics'. 'svglite' is a fork of the older 'RSvgDevice' package.

Maintained by Thomas Lin Pedersen. Last updated 5 months ago.

svglibpngcpp

9.6 match 182 stars 15.51 score 4.7k scripts 223 dependents

guangchuangyu

emojifont:Emoji and Font Awesome in Graphics

An implementation of using emoji and fontawesome for using in both base and 'ggplot2' graphics.

Maintained by Guangchuang Yu. Last updated 4 years ago.

emojifont-awesomeggplot2visualization

13.3 match 67 stars 8.47 score 900 scripts 3 dependents

coolbutuseless

tickle:Easily Build Tcl/Tk UIs

Wrap tcltk to make GUI creation easier.

Maintained by mikefc. Last updated 3 years ago.

15.5 match 125 stars 5.88 score 11 scripts

leonawicz

trekfont:Star Trek Fonts Collection

Provides a collection of true type and open type Star Trek-themed fonts.

Maintained by Matthew Leonawicz. Last updated 6 months ago.

fontsstar-trek

21.1 match 21 stars 4.02 score 8 scripts

yixuan

showtextdb:Font Files for the 'showtext' Package

Providing font files that can be used by the 'showtext' package.

Maintained by Yixuan Qiu. Last updated 5 years ago.

12.7 match 6.59 score 178 scripts 35 dependents

janmarvin

openxlsx2:Read, Write and Edit 'xlsx' Files

Simplifies the creation of 'xlsx' files by providing a high level interface to writing, styling and editing worksheets.

Maintained by Jan Marvin Garbuszus. Last updated 2 days ago.

xlsxcpp

5.8 match 138 stars 13.67 score 194 scripts 11 dependents

scholaempirica

reschola:The Schola Empirica Package

A collection of utilies, themes and templates for data analysis at Schola Empirica.

Maintained by Jan Netík. Last updated 5 months ago.

11.3 match 4 stars 4.83 score 14 scripts

davidgohel

ggiraph:Make 'ggplot2' Graphics Interactive

Create interactive 'ggplot2' graphics using 'htmlwidgets'.

Maintained by David Gohel. Last updated 3 months ago.

libpngcpp

3.8 match 819 stars 14.39 score 4.1k scripts 34 dependents

rstudio

shinythemes:Themes for Shiny

Themes for use with Shiny. Includes several Bootstrap themes from <https://bootswatch.com/>, which are packaged for use with Shiny applications.

Maintained by Winston Chang. Last updated 3 years ago.

3.3 match 155 stars 13.06 score 8.5k scripts 124 dependents

rstudio

rmarkdown:Dynamic Documents for R

Convert R Markdown documents into a variety of formats.

Maintained by Yihui Xie. Last updated 4 months ago.

literate-programmingmarkdownpandocrmarkdown

1.5 match 2.9k stars 21.79 score 14k scripts 3.7k dependents

lionel-

fontLiberation:Liberation Fonts

A placeholder for the Liberation fonts.

Maintained by Lionel Henry. Last updated 8 years ago.

4.4 match 7.04 score 2 scripts 145 dependents

wch

fontcm:Computer Modern font for use with extrafont package

Computer Modern font for use with extrafont package

Maintained by Winston Chang. Last updated 11 years ago.

5.4 match 25 stars 4.80 score 50 scripts

datastorm-open

visNetwork:Network Visualization using 'vis.js' Library

Provides an R interface to the 'vis.js' JavaScript charting library. It allows an interactive visualization of networks.

Maintained by Benoit Thieurmel. Last updated 2 years ago.

1.2 match 549 stars 15.14 score 4.1k scripts 195 dependents

vankesteren

firatheme:A ggplot2 Theme using the Fira Sans Font

Make your graphs pretty with the Fira font, colours and prettified axes and labels.

Maintained by Erik-Jan van Kesteren. Last updated 4 years ago.

3.5 match 76 stars 4.24 score 46 scripts

fmmattioni

downloadthis:Implement Download Buttons in 'rmarkdown'

Implement download buttons in HTML output from 'rmarkdown' without the need for 'runtime:shiny'.

Maintained by Felipe Mattioni Maturana. Last updated 5 months ago.

1.3 match 146 stars 9.63 score 856 scripts 1 dependents

coolbutuseless

nara:Native Raster Image Tools

Tools for 'nativeRaster' images.

Maintained by Mike Cheng. Last updated 29 days ago.

gfxgraphicspkg

1.7 match 62 stars 6.32 score 42 scripts

jrosell

jrrosell:Personal R package for Jordi Rosell

Useful functions for personal usage.

Maintained by Jordi Rosell. Last updated 3 months ago.

3.4 match 2 stars 3.08 score 7 scripts

january3

tagcloud:Tag Clouds

Generating Tag and Word Clouds.

Maintained by January Weiner. Last updated 5 years ago.

cpp

2.0 match 4.98 score 23 scripts 7 dependents

insileco

graphicsutils:Collection of graphics utilities

A collection of functions to easily customize graphics-based plots.

Maintained by Kevin Cazelles. Last updated 3 years ago.

graphicsplotcpp

1.5 match 4 stars 3.90 score 20 scripts

lcbc-uio

lcbcr:LCBC brand package

Functions and setups with brand styling and lab general setups.

Maintained by Athanasia Mo Mowinckel. Last updated 3 years ago.

1.8 match 3.00 score 2 scripts

wjschne

WJSmisc:Miscellaneous functions from W. Joel Schneider

Several functions I find useful.

Maintained by W. Joel Schneider. Last updated 2 years ago.

1.7 match 5 stars 2.40 score 10 scripts

txwri

twriTemplates:Templates for TWRI reports

Provides word and pdf Rmarkdown templates that meet TWRI branding guidance.

Maintained by Michael Schramm. Last updated 1 years ago.

ggplot2-themermarkdown

2.0 match 1.78 score 12 scripts

tanho63

tantastic:Fun and Shiny and Pretty Functions

A personal package of R functions, ggplot themes, and other miscellany.

Maintained by Tan Ho. Last updated 10 months ago.

1.8 match 1 stars 1.70 score 5 scripts

plstenger

Anaconda:Targeted Differential and Global Enrichment Analysis of Taxonomic Rank by Shared Asvs

Targeted differential and global enrichment analysis of taxonomic rank by shared ASVs (Amplicon Sequence Variant), for high-throughput eDNA sequencing of fungi, bacteria, and metazoan. Actually works in two steps: I) Targeted differential analysis from QIIME2 data and II) Global analysis by Taxon Mann-Whitney U test analysis from targeted analysis (I) (I) Estimate variance-mean dependence in count/abundance ASVs data from high-throughput sequencing assays and test for differential represented ASVs based on a model using the negative binomial distribution. (II) NCBITaxon_MWU uses continuous measure of significance (such as fold-change or -log(p-value)) to identify NCBITaxon that are significantly enriches with either up- or down-represented ASVs. If the measure is binary (0 or 1) the script will perform a typical 'NCBITaxon enrichment' analysis based Fisher's exact test: it will show NCBITaxon over-represented among the ASVs that have 1 as their measure. On the plot, different fonts are used to indicate significance and color indicates enrichment with either up (red) or down (blue) regulated ASVs. No colors are shown for binary measure analysis. The tree on the plot is hierarchical clustering of NCBITaxon based on shared ASVs. Categories with no branch length between them are subsets of each other. The fraction next to the category name indicates the fraction of 'good' ASVs in it; 'good' ASVs are the ones exceeding the arbitrary absValue cutoff (option in taxon_mwuPlot()). For Fisher's based test, specify absValue=0.5. This value does not affect statistics and is used for plotting only. The original idea was for genes differential expression analysis from Wright et al (2015) <doi:10.1186/s12864-015-1540-2>; adapted here for taxonomic analysis. The 'Anaconda' package makes it possible to carry out these analyses by automatically creating several graphs and tables and storing them in specially created subfolders. You will need your QIIME2 pipeline output for each kingdom (eg; Fungi and/or Bacteria and/or Metazoan): i) taxonomy.tsv, ii) taxonomy_RepSeq.tsv, iii) ASV.tsv and iv) SampleSheet_comparison.txt (the latter being created by you).

Maintained by Pierre-Louis Stenger. Last updated 1 months ago.

0.5 match 3.18 score