Showing 7 of total 7 results (show query)
bioc
AnVIL:Bioconductor on the AnVIL compute environment
The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The AnVIL package provides end-user and developer functionality. For the end-user, AnVIL provides fast binary package installation, utitlities for working with Terra / AnVIL table and data resources, and convenient functions for file movement to and from Google cloud storage. For developers, AnVIL provides programatic access to the Terra, Leonardo, Rawls, and Dockstore RESTful programming interface, including helper functions to transform JSON responses to formats more amenable to manipulation in R.
Maintained by Marcel Ramos. Last updated 23 days ago.
79.4 match 8.80 score 250 scripts 10 dependentsbioc
AnVILBase:Generic functions for interacting with the AnVIL ecosystem
Provides generic functions for interacting with the AnVIL ecosystem. Packages that use either GCP or Azure in AnVIL are built on top of AnVILBase. Extension packages will provide methods for interacting with other cloud providers.
Maintained by Marcel Ramos. Last updated 5 months ago.
19.3 match 6.68 score 70 scripts 19 dependentsbioc
AnVILWorkflow:Run workflows implemented in Terra/AnVIL workspace
The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The main cloud-based genomics platform deported by the AnVIL project is Terra. The AnVILWorkflow package allows remote access to Terra implemented workflows, enabling end-user to utilize Terra/ AnVIL provided resources - such as data, workflows, and flexible/scalble computing resources - through the conventional R functions.
Maintained by Sehyun Oh. Last updated 27 days ago.
infrastructuresoftwareanvilgcpterraworkflows
20.0 match 6 stars 6.03 score 1 scriptsbioc
AnVILGCP:The GCP R Client for the AnVIL
The package provides a set of functions to interact with the Google Cloud Platform (GCP) services on the AnVIL platform. The package is designed to work with the AnVIL package. User-level interaction with this package should be minimal.
Maintained by Marcel Ramos. Last updated 2 months ago.
softwareinfrastructurethirdpartyclientdataimport
17.1 match 5.66 score 27 scripts 3 dependentsbioc
AnVILAz:R / Bioconductor Support for the AnVIL Azure Platform
The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The AnVILAz package supports end-users and developers using the AnVIL platform in the Azure cloud. The package provides a programmatic interface to AnVIL resources, including workspaces, notebooks, tables, and workflows. The package also provides utilities for managing resources, including copying files to and from Azure Blob Storage, and creating shared access signatures (SAS) for secure access to Azure resources.
Maintained by Marcel Ramos. Last updated 5 months ago.
softwareinfrastructurethirdpartyclient
10.6 match 5.45 score 5 scriptsbioc
AnVILPublish:Publish Packages and Other Resources to AnVIL Workspaces
Use this package to create or update AnVIL workspaces from resources such as R / Bioconductor packages. The metadata about the package (e.g., select information from the package DESCRIPTION file and from vignette YAML headings) are used to populate the 'DASHBOARD'. Vignettes are translated to python notebooks ready for evaluation in AnVIL.
Maintained by Marcel Ramos. Last updated 5 months ago.
8.5 match 4.48 scorebioc
AnVILBilling:Provide functions to retrieve and report on usage expenses in NHGRI AnVIL (anvilproject.org).
AnVILBilling helps monitor AnVIL-related costs in R, using queries to a BigQuery table to which costs are exported daily. Functions are defined to help categorize tasks and associated expenditures, and to visualize and explore expense profiles over time. This package will be expanded to help users estimate costs for specific task sets.
Maintained by Vince Carey. Last updated 5 months ago.
8.1 match 4.30 score 5 scripts