Showing 84 of total 84 results (show query)
stefanedwards
lemon:Freshing Up your 'ggplot2' Plots
Functions for working with legends and axis lines of 'ggplot2', facets that repeat axis lines on all panels, and some 'knitr' extensions.
Maintained by Stefan McKinnon Edwards. Last updated 4 months ago.
axis-linesfacetsggplot-extensionggplot2knitrlegendticksvisualization
11.8 match 190 stars 11.98 score 1.7k scripts 4 dependents
lme4
lme4:Linear Mixed-Effects Models using 'Eigen' and S4
Fit linear and generalized linear mixed-effects models. The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' "glue".
Maintained by Ben Bolker. Last updated 3 days ago.
5.1 match 647 stars 20.69 score 35k scripts 1.5k dependents
csdaw
ggprism:A 'ggplot2' Extension Inspired by 'GraphPad Prism'
Provides various themes, palettes, and other functions that are used to customise ggplots to look like they were made in 'GraphPad Prism'. The 'Prism'-look is achieved with theme_prism() and scale_fill|colour_prism(), axes can be changed with custom guides like guide_prism_minor(), and significance indicators added with add_pvalue().
Maintained by Charlotte Dawson. Last updated 12 months ago.
9.6 match 175 stars 10.56 score 1.1k scripts 5 dependents
tidyverse
ggplot2:Create Elegant Data Visualisations Using the Grammar of Graphics
A system for 'declaratively' creating graphics, based on "The Grammar of Graphics". You provide the data, tell 'ggplot2' how to map variables to aesthetics, what graphical primitives to use, and it takes care of the details.
Maintained by Thomas Lin Pedersen. Last updated 10 days ago.
data-visualisationvisualisation
3.8 match 6.6k stars 25.10 score 645k scripts 7.5k dependents
harrelfe
Hmisc:Harrell Miscellaneous
Contains many functions useful for data analysis, high-level graphics, utility operations, functions for computing sample size and power, simulation, importing and annotating datasets, imputing missing values, advanced table making, variable clustering, character string manipulation, conversion of R objects to LaTeX and html code, recoding variables, caching, simplified parallel computing, encrypting and decrypting data using a safe workflow, general moving window statistical estimation, and assistance in interpreting principal component analysis.
Maintained by Frank E Harrell Jr. Last updated 15 hours ago.
4.3 match 210 stars 17.61 score 17k scripts 750 dependents
r-lib
cli:Helpers for Developing Command Line Interfaces
A suite of tools to build attractive command line interfaces ('CLIs'), from semantic elements: headings, lists, alerts, paragraphs, etc. Supports custom themes via a 'CSS'-like language. It also contains a number of lower level 'CLI' elements: rules, boxes, trees, and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI colors and text styles as well.
Maintained by Gábor Csárdi. Last updated 2 days ago.
3.0 match 664 stars 19.33 score 1.4k scripts 14k dependents
doi-usgs
EGRET:Exploration and Graphics for RivEr Trends
Statistics and graphics for streamflow history, water quality trends, and the statistical modeling algorithm: Weighted Regressions on Time, Discharge, and Season (WRTDS).
Maintained by Laura DeCicco. Last updated 4 months ago.
usgswater-qualitywater-quality-data
5.1 match 90 stars 10.72 score 362 scripts 1 dependents
jonathancornelissen
highfrequency:Tools for Highfrequency Data Analysis
Provide functionality to manage, clean and match highfrequency trades and quotes data, calculate various liquidity measures, estimate and forecast volatility, detect price jumps and investigate microstructure noise and intraday periodicity. A detailed vignette can be found in the paper "Analyzing Intraday Financial Data in R: The highfrequency Package" by Boudt, Kleen, and Sjoerup (2022, <doi:10.18637/jss.v104.i08>). The DOI in the CITATION is for a new Journal of Statistical Software publication that will be registered after publication on CRAN. A working paper version can be found on SSRN: <doi:10.2139/ssrn.3917548>.
Maintained by Kris Boudt. Last updated 2 years ago.
6.8 match 152 stars 7.37 score 286 scripts
rblp
Rblpapi:R Interface to 'Bloomberg'
An R Interface to 'Bloomberg' is provided via the 'Blp API'.
Maintained by Dirk Eddelbuettel. Last updated 7 hours ago.
5.1 match 169 stars 9.41 score 115 scripts
nicholasjclark
mvgam:Multivariate (Dynamic) Generalized Additive Models
Fit Bayesian Dynamic Generalized Additive Models to multivariate observations. Users can build nonlinear State-Space models that can incorporate semiparametric effects in observation and process components, using a wide range of observation families. Estimation is performed using Markov Chain Monte Carlo with Hamiltonian Monte Carlo in the software 'Stan'. References: Clark & Wells (2023) <doi:10.1111/2041-210X.13974>.
Maintained by Nicholas J Clark. Last updated 7 hours ago.
bayesian-statisticsdynamic-factor-modelsecological-modellingforecastinggaussian-processgeneralised-additive-modelsgeneralized-additive-modelsjoint-species-distribution-modellingmultilevel-modelsmultivariate-timeseriesstantime-series-analysistimeseriesvector-autoregressionvectorautoregressioncpp
4.7 match 139 stars 9.85 score 117 scripts
hrbrmstr
ggalt:Extra Coordinate Systems, 'Geoms', Statistical Transformations, Scales and Fonts for 'ggplot2'
A compendium of new geometries, coordinate systems, statistical transformations, scales and fonts for 'ggplot2', including splines, 1d and 2d densities, univariate average shifted histograms, a new map coordinate system based on the 'PROJ.4'-library along with geom_cartogram() that mimics the original functionality of geom_map(), formatters for "bytes", a stat_stepribbon() function, increased 'plotly' compatibility and the 'StateFace' open source font 'ProPublica'. Further new functionality includes lollipop charts, dumbbell charts, the ability to encircle points and coordinate-system-based text annotations.
Maintained by Bob Rudis. Last updated 2 years ago.
geomggplot-extensionggplot2ggplot2-geomggplot2-scales
3.5 match 674 stars 12.59 score 2.3k scripts 7 dependents
gforge
forestplot:Advanced Forest Plot Using 'grid' Graphics
Allows the creation of forest plots with advanced features, such as multiple confidence intervals per row, customizable fonts for individual text elements, and flexible confidence interval drawing. It also supports mixing text with mathematical expressions. The package extends the application of forest plots beyond traditional meta-analyses, offering a more general version of the original 'rmeta' package’s forestplot() function. It relies heavily on the 'grid' package for rendering the plots.
Maintained by Max Gordon. Last updated 4 months ago.
3.5 match 43 stars 11.47 score 716 scripts 21 dependents
daijiang
neonDivData:Standardized NEON Organismal Data for Biodiversity Research
Cleaned, simplified, and standardized NEON organismal data for biodiversity research. The following taxonomic groups are included so far: algae, beetles, birds, fish, herptiles, macroinvertebrates, mosquitoes, plants, small_mammals, ticks, tick_pathogens, and zooplankton. NEON input data (<https://data.neonscience.org>) were processed and standardized using R package `ecocomDP` (<https://github.com/EDIorg/ecocomDP>).
Maintained by Daijiang Li. Last updated 10 months ago.
7.9 match 15 stars 4.18 score 17 scripts
nunosempere
labeling:Axis Labeling
Functions which provide a range of axis labeling algorithms.
Maintained by Nuno Sempere. Last updated 2 years ago.
3.4 match 1 stars 9.50 score 147 scripts 7.9k dependents
cran
circular:Circular Statistics
Circular Statistics, from "Topics in circular Statistics" (2001) S. Rao Jammalamadaka and A. SenGupta, World Scientific.
Maintained by Eduardo García-Portugués. Last updated 7 months ago.
4.0 match 7 stars 7.76 score 1.1k scripts 40 dependents
asgr
magicaxis:Pretty Scientific Plotting with Minor-Tick and Log Minor-Tick Support
Functions to make useful (and pretty) plots for scientific plotting. Additional plotting features are added for base plotting, with particular emphasis on making attractive log axis plots.
Maintained by Aaron Robotham. Last updated 5 months ago.
4.6 match 9 stars 6.84 score 184 scripts 7 dependents
deepayan
lattice:Trellis Graphics for R
A powerful and elegant high-level data visualization system inspired by Trellis graphics, with an emphasis on multivariate data. Lattice is sufficient for typical graphics needs, and is also flexible enough to handle most nonstandard requirements. See ?Lattice for an introduction.
Maintained by Deepayan Sarkar. Last updated 11 months ago.
1.8 match 68 stars 17.33 score 27k scripts 13k dependents
smouksassi
ggquickeda:Quickly Explore Your Data Using 'ggplot2' and 'table1' Summary Tables
Quickly and easily perform exploratory data analysis by uploading your data as a 'csv' file. Start generating insights using 'ggplot2' plots and 'table1' tables with descriptive stats, all using an easy-to-use point and click 'Shiny' interface.
Maintained by Samer Mouksassi. Last updated 11 hours ago.
3.4 match 73 stars 8.34 score 27 scripts
jmw86069
jamba:Just Analysis Methods Base
Just analysis methods ('jam') base functions focused on bioinformatics. Version- and gene-centric alphanumeric sort, unique name and version assignment, colorized console and 'HTML' output, color ramp and palette manipulation, 'Rmarkdown' cache import, styled 'Excel' worksheet import and export, interpolated raster output from smooth scatter and image plots, list to delimited vector, efficient list tools.
Maintained by James M. Ward. Last updated 10 days ago.
5.1 match 6 stars 5.43 score
hzhanghenry
RCircos:Circos 2D Track Plot
A simple and flexible way to generate Circos 2D track plot images for genomic data visualization is implemented in this package. The types of plots include: heatmap, histogram, lines, scatterplot, tiles and plot items for further decorations include connector, link (lines and ribbons), and text (gene) label. All functions require only R graphics package that comes with R base installation.
Maintained by Hongen Zhang. Last updated 3 years ago.
3.7 match 6 stars 7.21 score 298 scripts 3 dependents
dallenmidd
IxPopDyMod:Framework for Tick Population and Infection Modeling
Code to specify, run, and then visualize and analyze the results of Ixodidae (hard-bodied ticks) population and infection dynamics models. Such models exist in the literature, but the source code to run them is not always available. 'IxPopDyMod' provides an easy way for these models to be written and shared.
Maintained by Myles Stokowski. Last updated 4 months ago.
8.7 match 2 stars 3.00 score 6 scriptscran
ggtern:An Extension to 'ggplot2', for the Creation of Ternary Diagrams
Extends the functionality of 'ggplot2', providing the capability to plot ternary diagrams for (subset of) the 'ggplot2' geometries. Additionally, 'ggtern' has implemented several NEW geometries which are unavailable to the standard 'ggplot2' release. For further examples and documentation, please proceed to the 'ggtern' website.
Maintained by Nicholas Hamilton. Last updated 12 months ago.
3.7 match 4 stars 7.05 score 1.1k scripts 6 dependents
insightsengineering
ggplot2.utils:Selected Utilities Extending 'ggplot2'
Selected utilities, in particular 'geoms' and 'stats' functions, extending the 'ggplot2' package. This package imports functions from 'EnvStats' <doi:10.1007/978-1-4614-8456-1> by Millard (2013), 'ggpp' <https://CRAN.R-project.org/package=ggpp> by Aphalo et al. (2023) and 'ggstats' <doi:10.5281/zenodo.10183964> by Larmarange (2023), and then exports them. This package also contains modified code from 'ggquickeda' <https://CRAN.R-project.org/package=ggquickeda> by Mouksassi et al. (2023) for Kaplan-Meier lines and ticks additions to plots. All functions are tested to make sure that they work reliably.
Maintained by Daniel Sabanés Bové. Last updated 9 months ago.
3.9 match 6 stars 6.26 score 14 scripts
jacobnabe
DEPONS2R:Read, Plot and Analyse Output from the DEPONS Model
Methods for analyzing population dynamics and movement tracks simulated using the DEPONS model <https://www.depons.eu> (v.3.0), for manipulating input raster files, shipping routes and for analyzing sound propagated from ships.
Maintained by Jacob Nabe-Nielsen. Last updated 2 months ago.
agent-based-modelingenvironmental-modellingmarine-biology
8.2 match 2.85 score 4 scripts
william-swl
baizer:Useful Functions for Data Processing
In ancient Chinese mythology, Bai Ze is a divine creature that knows the needs of everything. 'baizer' provides data processing functions frequently used by the author. Hope this package also knows what you want!
Maintained by William Song. Last updated 1 years ago.
dataframenumbersstringstidyverse
5.8 match 6 stars 3.95 score 5 scripts 1 dependentsinsightsengineering
tern:Create Common TLGs Used in Clinical Trials
Table, Listings, and Graphs (TLG) library for common outputs used in clinical trials.
Maintained by Joe Zhu. Last updated 2 months ago.
clinical-trialsgraphslistingsnestoutputstables
1.8 match 79 stars 12.62 score 186 scripts 9 dependents
shosaco
vistime:Pretty Timelines in R
A library for creating time based charts, like Gantt or timelines. Possible outputs include 'ggplot2' diagrams, 'plotly.js' graphs, 'Highcharts.js' widgets and data.frames. Results can be used in the 'RStudio' viewer pane, in 'RMarkdown' documents or in Shiny apps. In the interactive outputs created by vistime() and hc_vistime(), you can interact with the plot using mouse hover or zoom.
Maintained by Sandro Raabe. Last updated 6 months ago.
2.3 match 174 stars 9.37 score 142 scripts 1 dependents
rmheiberger
HH:Statistical Analysis and Data Display: Heiberger and Holland
Support software for Statistical Analysis and Data Display (Second Edition, Springer, ISBN 978-1-4939-2121-8, 2015) and (First Edition, Springer, ISBN 0-387-40270-5, 2004) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.
Maintained by Richard M. Heiberger. Last updated 1 months ago.
3.3 match 3 stars 6.42 score 752 scripts 5 dependents
mmaechler
sfsmisc:Utilities from 'Seminar fuer Statistik' ETH Zurich
Useful utilities ['goodies'] from Seminar fuer Statistik ETH Zurich, some of which were ported from S-plus in the 1990s. For graphics, have pretty (Log-scale) axes eaxis(), an enhanced Tukey-Anscombe plot, combining histogram and boxplot, 2d-residual plots, a 'tachoPlot()', pretty arrows, etc. For robustness, have a robust F test and robust range(). For system support, notably on Linux, provides 'Sys.*()' functions with more access to system and CPU information. Finally, miscellaneous utilities such as simple efficient prime numbers, integer codes, Duplicated(), toLatex.numeric() and is.whole().
Maintained by Martin Maechler. Last updated 5 months ago.
1.7 match 11 stars 10.87 score 566 scripts 119 dependents
sigbertklinke
HKRbook:Apps and Data for the Book "Introduction to Statistics"
Functions, Shiny apps and data for the book "Introduction to Statistics" by Wolfgang Karl Härdle, Sigbert Klinke, and Bernd Rönz (2015) <doi:10.1007/978-3-319-17704-5>.
Maintained by Sigbert Klinke. Last updated 2 years ago.
4.5 match 1 stars 3.70 score
animint
animint2:Animated Interactive Grammar of Graphics
Functions are provided for defining animated, interactive data visualizations in R code, and rendering on a web page. The 2018 Journal of Computational and Graphical Statistics paper, <doi:10.1080/10618600.2018.1513367> describes the concepts implemented.
Maintained by Toby Hocking. Last updated 28 days ago.
1.9 match 64 stars 8.87 score 173 scripts
miyamot0
fxl:'fxl' Single Case Design Charting Package
The 'fxl' Charting package is used to prepare and design single case design figures that are typically prepared in spreadsheet software. With 'fxl', there is no need to leave the R environment to prepare these works and many of the more unique conventions in single case experimental designs can be performed without the need for physically constructing features of plots (e.g., drawing annotations across plots). Support is provided for various different plotting arrangements (e.g., multiple baseline), annotations (e.g., brackets, arrows), and output formats (e.g., svg, rasters).
Maintained by Shawn Gilroy. Last updated 3 months ago.
behavior-analysissingle-case-designvisual-analysis
3.0 match 8 stars 5.46 score 24 scripts
darth-git
dampack:Decision-Analytic Modeling Package
A suite of functions for analyzing and visualizing the health economic outputs of mathematical models. This package was developed with funding from the National Institutes of Allergy and Infectious Diseases of the National Institutes of Health under award no. R01AI138783. The content of this package is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. The theoretical underpinnings of 'dampack''s functionality are detailed in Hunink et al. (2014) <doi:10.1017/CBO9781139506779>.
Maintained by David Garibay. Last updated 6 months ago.
1.9 match 35 stars 8.35 score 161 scriptshrbrmstr
vegalite:Tools to Encode Visualizations with the 'Grammar of Graphics'-Like 'Vega-Lite' 'Spec'
The 'Vega-Lite' 'JavaScript' framework provides a higher-level grammar for visual analysis, akin to 'ggplot' or 'Tableau', that generates complete 'Vega' specifications. Functions exist which enable building a valid 'spec' from scratch or importing a previously created 'spec' file. Functions also exist to export 'spec' files and to generate code which will enable plots to be embedded in properly configured web pages. The default behavior is to generate an 'htmlwidget'.
Maintained by Bob Rudis. Last updated 7 years ago.
data-visualizationdatavisualizationvega-litevega-lite-specvisualizationwidget
2.0 match 158 stars 7.60 score 84 scripts
bioc
EnhancedVolcano:Publication-ready volcano plots with enhanced colouring and labeling
Volcano plots represent a useful way to visualise the results of differential expression analyses. Here, we present a highly-configurable function that produces publication-ready volcano plots. EnhancedVolcano will attempt to fit as many point labels in the plot window as possible, thus avoiding 'clogging' up the plot with labels that could not otherwise have been read. Other functionality allows the user to identify up to 4 different types of attributes in the same plot space via colour, shape, size, and shade parameter configurations.
Maintained by Kevin Blighe. Last updated 5 months ago.
rnaseqgeneexpressiontranscriptiondifferentialexpressionimmunooncology
1.3 match 422 stars 11.68 score 2.7k scripts
uclahs-cds
BoutrosLab.plotting.general:Functions to Create Publication-Quality Plots
Contains several plotting functions such as barplots, scatterplots, heatmaps, as well as functions to combine plots and assist in the creation of these plots. These functions will give users great ease of use and customization options in broad use for biomedical applications, as well as general purpose plotting. Each of the functions also provides valid default settings to make plotting data more efficient and producing high quality plots with standard colour schemes simpler. All functions within this package are capable of producing plots that are of the quality to be presented in scientific publications and journals. P'ng et al.; BPG: Seamless, automated and interactive visualization of scientific data; BMC Bioinformatics 2019 <doi:10.1186/s12859-019-2610-2>.
Maintained by Paul Boutros. Last updated 5 months ago.
1.7 match 12 stars 8.36 score 414 scripts 6 dependents
ropensci
ruODK:An R Client for the ODK Central API
Access and tidy up data from the 'ODK Central' API. 'ODK Central' is a clearinghouse for digitally captured data using ODK <https://docs.getodk.org/central-intro/>. It manages user accounts and permissions, stores form definitions, and allows data collection clients like 'ODK Collect' to connect to it for form download and submission upload. The 'ODK Central' API is documented at <https://docs.getodk.org/central-api/>.
Maintained by Florian W. Mayer. Last updated 4 months ago.
databaseopen-dataodkapidatadatasetodataodata-clientodk-centralopendatakit
1.8 match 42 stars 7.73 score 57 scripts 1 dependentsbioc
flowWorkspace:Infrastructure for representing and interacting with gated and ungated cytometry data sets.
This package is designed to facilitate comparison of automated gating methods against manual gating done in flowJo. This package allows you to import basic flowJo workspaces into BioConductor and replicate the gating from flowJo using the flowCore functionality. Gating hierarchies, groups of samples, compensation, and transformation are performed so that the output matches the flowJo analysis.
Maintained by Greg Finak. Last updated 10 days ago.
immunooncologyflowcytometrydataimportpreprocessingdatarepresentationzlibopenblascpp
1.7 match 7.89 score 576 scripts 10 dependents
weecology
LDATS:Latent Dirichlet Allocation Coupled with Time Series Analyses
Combines Latent Dirichlet Allocation (LDA) and Bayesian multinomial time series methods in a two-stage analysis to quantify dynamics in high-dimensional temporal data. LDA decomposes multivariate data into lower-dimension latent groupings, whose relative proportions are modeled using generalized Bayesian time series models that include abrupt changepoints and smooth dynamics. The methods are described in Blei et al. (2003) <doi:10.1162/jmlr.2003.3.4-5.993>, Western and Kleykamp (2004) <doi:10.1093/pan/mph023>, Venables and Ripley (2002, ISBN-13:978-0387954578), and Christensen et al. (2018) <doi:10.1002/ecy.2373>.
Maintained by Juniper L. Simonis. Last updated 5 years ago.
changepointldaparallel-temperingportalsoftmax
1.9 match 25 stars 6.93 score 45 scripts
mrjoh3
c3:'C3.js' Chart Library
Create interactive charts with the 'C3.js' <http://c3js.org/> charting library. All plot types in 'C3.js' are available and include line, bar, scatter, and mixed geometry plots. Plot annotations, labels and axis are highly adjustable. Interactive web based charts can be embedded in R Markdown documents or Shiny web applications.
Maintained by Matt Johnson. Last updated 4 years ago.
2.0 match 39 stars 6.45 score 72 scripts
jonathanlees
GEOmap:Topographic and Geologic Mapping
Set of routines for making map projections (forward and inverse), topographic maps, perspective plots, geological maps, geological map symbols, geological databases, interactive plotting and selection of focus regions.
Maintained by Jonathan M. Lees. Last updated 8 months ago.
3.7 match 3.38 score 162 scripts 3 dependents
yulab-smu
ggbreak:Set Axis Break for 'ggplot2'
An implementation of scale functions for setting axis breaks of a 'gg' plot (S Xu (2021) <doi:10.3389/fgene.2021.774846>).
Maintained by Guangchuang Yu. Last updated 1 months ago.
axis-breakcut-plotggbreakggplot2wrap-plot
1.1 match 137 stars 9.81 score 956 scripts 1 dependents
bodkan
slendr:A Simulation Framework for Spatiotemporal Population Genetics
A framework for simulating spatially explicit genomic data which leverages real cartographic information for programmatic and visual encoding of spatiotemporal population dynamics on real geographic landscapes. Population genetic models are then automatically executed by the 'SLiM' software by Haller et al. (2019) <doi:10.1093/molbev/msy228> behind the scenes, using a custom built-in simulation 'SLiM' script. Additionally, fully abstract spatial models not tied to a specific geographic location are supported, and users can also simulate data from standard, non-spatial, random-mating models. These can be simulated either with the 'SLiM' built-in back-end script, or using an efficient coalescent population genetics simulator 'msprime' by Baumdicker et al. (2022) <doi:10.1093/genetics/iyab229> with a custom-built 'Python' script bundled with the R package. Simulated genomic data is saved in a tree-sequence format and can be loaded, manipulated, and summarised using tree-sequence functionality via an R interface to the 'Python' module 'tskit' by Kelleher et al. (2019) <doi:10.1038/s41588-019-0483-y>. Complete model configuration, simulation and analysis pipelines can be therefore constructed without a need to leave the R environment, eliminating friction between disparate tools for population genetic simulations and data analysis.
Maintained by Martin Petr. Last updated 13 days ago.
popgenpopulation-geneticssimulationsspatial-statistics
1.2 match 56 stars 9.15 score 88 scripts
kharchenkolab
sccore:Core Utilities for Single-Cell RNA-Seq
Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels.
Maintained by Evan Biederstedt. Last updated 1 years ago.
1.7 match 12 stars 6.44 score 36 scripts 9 dependents
jlcarrascoub
iccCounts:Intraclass Correlation Coefficient for Count Data
Estimates the intraclass correlation coefficient (ICC) for count data to assess repeatability (intra-methods concordance) and concordance (between-method concordance). In the concordance setting, the ICC is equivalent to the concordance correlation coefficient estimated by variance components. The ICC is estimated using the estimates from generalized linear mixed models. The within-subjects distributions considered are: Poisson; Negative Binomial with additive and proportional extradispersion; Zero-Inflated Poisson; and Zero-Inflated Negative Binomial with additive and proportional extradispersion. The statistical methodology used to estimate the ICC with count data can be found in Carrasco (2010) <doi:10.1111/j.1541-0420.2009.01335.x>.
Maintained by Josep L. Carrasco. Last updated 1 years ago.
5.2 match 2.00 score 8 scripts
unhcr-dataviz
unhcrthemes:UNHCR 'ggplot2' Theme and Colour Palettes
A 'ggplot2' theme and color palettes following the United Nations High Commissioner for Refugees (UNHCR) Data Visualization Guidelines recommendations.
Maintained by Cédric Vidonne. Last updated 2 months ago.
ggplot2ggplot2-scalesggplot2-themes
1.5 match 27 stars 6.44 score 102 scripts
daroczig
binancer:API Client to 'Binance'
R client to the 'Binance' Public Rest API for data collection on cryptocurrencies, portfolio management and trading: <https://github.com/binance/binance-spot-api-docs/blob/master/rest-api.md>.
Maintained by Gergely Daróczi. Last updated 1 years ago.
apibinancebinance-apibitcoinblockchaincryptocurrency
1.9 match 53 stars 5.11 score 49 scripts
kwstat
connected:Visualize and Improve Connectedness of Factors in Tables
Visualize the connectedness of factors in two-way tables. Perform two-way filtering to improve the degree of connectedness. See Weeks & Williams (1964) <doi:10.1080/00401706.1964.10490188>.
Maintained by Kevin Wright. Last updated 13 days ago.
2.3 match 4.18 scoreropensci
roreviewapi:Plumber API to report package structure and function
Plumber API to report package structure and function.
Maintained by Mark Padgham. Last updated 28 days ago.
1.7 match 4 stars 5.28 score
nicwir
QurvE:Robust and User-Friendly Analysis of Growth and Fluorescence Curves
High-throughput analysis of growth curves and fluorescence data using three methods: linear regression, growth model fitting, and smooth spline fit. Analysis of dose-response relationships via smoothing splines or dose-response models. Complete data analysis workflows can be executed in a single step via user-friendly wrapper functions. The results of these workflows are summarized in detailed reports as well as intuitively navigable 'R' data containers. A 'shiny' application provides access to all features without requiring any programming knowledge. The package is described in further detail in Wirth et al. (2023) <doi:10.1038/s41596-023-00850-7>.
Maintained by Nicolas T. Wirth. Last updated 1 years ago.
1.5 match 25 stars 6.00 score 7 scripts
inbo
INBOtheme:Themes for ggplot2
Several themes for the ggplot2 package. Among others themes complying with the style guide for the Research Institute for Nature and Forest (INBO) and Elsevier journals.
Maintained by Thierry Onkelinx. Last updated 2 years ago.
1.7 match 3 stars 5.20 score 356 scripts
braverock
FinancialInstrument:Financial Instrument Model Infrastructure for R
Infrastructure for defining meta-data and relationships for financial instruments.
Maintained by Ross Bennett. Last updated 7 years ago.
1.8 match 19 stars 4.99 score 102 scripts
remkoduursma
smatr:(Standardised) Major Axis Estimation and Testing Routines
Methods for fitting bivariate lines in allometry using the major axis (MA) or standardised major axis (SMA), and for making inferences about such lines. The available methods of inference include confidence intervals and one-sample tests for slope and elevation, testing for a common slope or elevation amongst several allometric lines, constructing a confidence interval for a common slope or elevation, and testing for no shift along a common axis, amongst several samples. See Warton et al. 2012 <doi:10.1111/j.2041-210X.2011.00153.x> for methods description.
Maintained by Remko Duursma. Last updated 7 years ago.
1.7 match 1 stars 5.20 score 212 scripts 5 dependents
kof-ch
tstools:A Time Series Toolbox for Official Statistics
Plot official statistics' time series conveniently: automatic legends, highlight windows, stacked bar chars with positive and negative contributions, sum-as-line option, two y-axes with automatic horizontal grids that fit both axes and other popular chart types. 'tstools' comes with a plethora of defaults to let you plot without setting an abundance of parameters first, but gives you the flexibility to tweak the defaults. In addition to charts, 'tstools' provides a super fast, 'data.table' backed time series I/O that allows the user to export / import long format, wide format and transposed wide format data to various file types.
Maintained by Stéphane Bisinger. Last updated 1 years ago.
1.3 match 11 stars 6.47 score 177 scripts
abarbour
kitagawa:Spectral Response of Water Wells to Harmonic Strain and Pressure Signals
Provides tools to calculate the theoretical hydrodynamic response of an aquifer undergoing harmonic straining or pressurization, or analyze measured responses. There are two classes of models here, designed for use with confined aquifers: (1) for sealed wells, based on the model of Kitagawa et al (2011, <doi:10.1029/2010JB007794>), and (2) for open wells, based on the models of Cooper et al (1965, <doi:10.1029/JZ070i016p03915>), Hsieh et al (1987, <doi:10.1029/WR023i010p01824>), Rojstaczer (1988, <doi:10.1029/JB093iB11p13619>), Liu et al (1989, <doi:10.1029/JB094iB07p09453>), and Wang et al (2018, <doi:10.1029/2018WR022793>). Wang's solution is a special exception which allows for leakage out of the aquifer (semi-confined); it is equivalent to Hsieh's model when there is no leakage (the confined case). These models treat strain (or aquifer head) as an input to the physical system, and fluid-pressure (or water height) as the output. The applicable frequency band of these models is characteristic of seismic waves, atmospheric pressure fluctuations, and solid earth tides.
Maintained by Andrew J. Barbour. Last updated 1 years ago.
harmonic-strainsseismic-wavesseismometerstrainstrainmeterwater-levelwater-well
1.8 match 3 stars 4.91 score 27 scripts
michaelhallquist
ggbrain:Create Images of Volumetric Brain Data in NIfTI Format Using 'ggplot2' Syntax
A 'ggplot2'-consistent approach to generating 2D displays of volumetric brain imaging data. Display data from multiple NIfTI images using standard 'ggplot2' conventions such scales, limits, and themes to control the appearance of displays. The resulting plots are returned as 'patchwork' objects, inheriting from 'ggplot', allowing for any standard modifications of display aesthetics supported by 'ggplot2'.
Maintained by Michael Hallquist. Last updated 25 days ago.
1.7 match 2 stars 5.03 score 18 scripts
gibonet
ggswissmaps:Offers Various Swiss Maps as Data Frames and 'ggplot2' Objects
Offers various swiss maps as data frames and 'ggplot2' objects and gives the possibility to add layers of data on the maps. Data are publicly available from the swiss federal statistical office. In addition to the \code{maps2} object (a list of 8 swiss maps, at various levels), there are the data frames with the boundaries used to produce these maps (\code{shp_df}, a list with 8 data frames).
Maintained by Sandro Burri. Last updated 7 months ago.
1.6 match 5 stars 5.20 score 16 scripts
eoda-dev
rtabulator:R Bindings for 'Tabulator JS'
Provides R bindings for 'Tabulator JS' <https://tabulator.info/>. Makes it a breeze to create highly customizable interactive tables in 'rmarkdown' documents and 'shiny' applications. It includes filtering, grouping, editing, input validation, history recording, column formatters, packaged themes and more.
Maintained by Stefan Kuethe. Last updated 4 months ago.
bindingshtmlwidgetsrlangshinyspreadsheettabletabulator-js
1.9 match 11 stars 4.44 score 9 scripts
tuomonieminen
read.gt3x:Parse 'ActiGraph' 'GT3X'/'GT3X+' 'Accelerometer' Data
Implements a high performance C++ parser for 'ActiGraph' 'GT3X'/'GT3X+' data format (with extension '.gt3x') for 'accelerometer' samples. Activity samples can be easily read into a matrix or data.frame. This allows for storing the raw 'accelerometer' samples in the original binary format to reserve space.
Maintained by Tuomo Nieminen. Last updated 3 years ago.
1.8 match 4.46 score 24 scripts 4 dependents
juba
obsplot:Create Charts with 'Observable Plot'
Creation of charts with the 'Observable Plot' 'JavaScript' library.
Maintained by Julien Barnier. Last updated 2 years ago.
1.5 match 60 stars 5.08 score 10 scripts
myles-lewis
easylabel:Interactive Scatter Plot and Volcano Plot Labels
Interactive labelling of scatter plots, volcano plots and Manhattan plots using a 'shiny' and 'plotly' interface. Users can hover over points to see where specific points are located and click points on/off to easily label them. Labels can be dragged around the plot to place them optimally. Plots can be exported directly to PDF for publication. For plots with large numbers of points, points can optionally be rasterized as a bitmap, while all other elements (axes, text, labels & lines) are preserved as vector objects. This can dramatically reduce file size for plots with millions of points such as Manhattan plots, and is ideal for publication.
Maintained by Myles Lewis. Last updated 1 months ago.
1.3 match 8 stars 5.56 score 8 scriptsuclahs-cds
CancerEvolutionVisualization:Publication Quality Phylogenetic Tree Plots
Generates tree plots with precise branch lengths, gene annotations, and cellular prevalence. The package handles complex tree structures (angles, lengths, etc.) and can be further refined as needed by the user.
Maintained by Paul Boutros. Last updated 2 days ago.
1.2 match 2 stars 6.34 score 5 scripts
aalfons
r2spss:Format R Output to Look Like SPSS
Create plots and LaTeX tables that look like SPSS output for use in teaching materials. Rather than copying-and-pasting SPSS output into documents, R code that mocks up SPSS output can be integrated directly into dynamic LaTeX documents with tools such as knitr. Functionality includes statistical techniques that are typically covered in introductory statistics classes: descriptive statistics, common hypothesis tests, ANOVA, and linear regression, as well as box plots, histograms, scatter plots, and line plots (including profile plots).
Maintained by Andreas Alfons. Last updated 3 years ago.
1.8 match 3 stars 4.18 score 1 scriptsbioc
abseqR:Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries
AbSeq is a comprehensive bioinformatic pipeline for the analysis of sequencing datasets generated from antibody libraries and abseqR is one of its packages. abseqR empowers the users of abseqPy (https://github.com/malhamdoosh/abseqPy) with plotting and reporting capabilities and allows them to generate interactive HTML reports for the convenience of viewing and sharing with other researchers. Additionally, abseqR extends abseqPy to compare multiple repertoire analyses and perform further downstream analysis on its output.
Maintained by JiaHong Fong. Last updated 5 months ago.
sequencingvisualizationreportwritingqualitycontrolmultiplecomparison
1.6 match 4.00 score 3 scripts
cipollinifabrizio-01
TAQMNGR:Manage Tick-by-Tick Transaction Data
Manager of tick-by-tick transaction data that performs 'cleaning', 'aggregation' and 'import' in an efficient and fast way. The package engine, written in C++, exploits the 'zlib' and 'gzstream' libraries to handle gzipped data without need to uncompress them. 'Cleaning' and 'aggregation' are performed according to Brownlees and Gallo (2006) <DOI:10.1016/j.csda.2006.09.030>. Currently, TAQMNGR processes raw data from WRDS (Wharton Research Data Service, <https://wrds-web.wharton.upenn.edu/wrds/>).
Maintained by Fabrizio Cipollini. Last updated 7 years ago.
6.0 match 1.00 score 2 scriptscran
RTTWebClient:Web Client to 'TickTrader'
R Web Client to 'TickTrader' platform. Provides you access to 'TickTrader' platform through Web API <https://ttlivewebapi.fxopen.net:8443/api/doc/index>.
Maintained by Yury Maisiayonak. Last updated 3 years ago.
2.0 match 2.70 scorecran
pBrackets:Plot Brackets
Adds different kinds of brackets to a plot, including braces, chevrons, parentheses or square brackets.
Maintained by Andreas Schulz. Last updated 4 years ago.
1.3 match 4.02 score 348 scripts 1 dependents
dzmitrygb
Repliscope:Replication Timing Profiling using DNA Copy Number
Create, Plot and Compare Replication Timing Profiles. The method is described in Muller et al., (2014) <doi: 10.1093/nar/gkt878>.
Maintained by Dzmitry G Batrakou. Last updated 3 years ago.
1.7 match 3.13 score 27 scripts
wernerstahel
plgraphics:User Oriented Plotting Functions
Plots with high flexibility and easy handling, including informative regression diagnostics for many models.
Maintained by Werner A. Stahel. Last updated 1 years ago.
2.3 match 2.08 score 12 scripts
slee981
wsjplot:Style Time Series Plots Like the Wall Street Journal
Easily override the default visual choices in 'ggplot2' to make your time series plots look more like the Wall Street Journal. Specific theme design choices include omitting x-axis grid lines and displaying sparse light grey y-axis grid lines. Additionally, this allows to label the y-axis scales with your units only displayed on the top-most number, while also removing the bottom most number (unless specifically overridden). The goal is visual simplicity, because who has time to waste looking at a cluttered graph?
Maintained by Stephen Lee. Last updated 4 years ago.
1.6 match 2.70 score 6 scripts
fernandomayer
FishMaps:Plots Fishery Data into Maps
Plots georeferenced fishery data into maps. This package uses the power of lattice's levelplot and maps databases from the maps and mapdata packages.
Maintained by Fernando Mayer. Last updated 9 years ago.
2.0 match 3 stars 2.18 score 1 scriptscran
gmDatabase:Accessing a Geometallurgical Database with R
A template for a geometallurgical database and a fast and easy interface for accessing it is provided in this package.
Maintained by K. Gerald van den Boogaart. Last updated 9 years ago.
3.3 match 1.28 score 19 scripts
jangraffelman
calibrate:Calibration of Scatterplot and Biplot Axes
Package for drawing calibrated scales with tick marks on (non-orthogonal) variable vectors in scatterplots and biplots. Also provides some functions for biplot creation and for multivariate analysis such as principal coordinate analysis.
Maintained by Jan Graffelman. Last updated 5 years ago.
0.5 match 1 stars 7.73 score 784 scripts 35 dependents
obreschkow
docore:Utility Functions for Scientific Coding
Basic routines used in scientific coding, such as timing routines, vector/array handing functions and I/O support routines.
Maintained by Danail Obreschkow. Last updated 3 years ago.
3.3 match 1.00 score
cheuerde
plotcli:Command Line Interface Plotting
The 'plotcli' package provides terminal-based plotting in R. It supports colored scatter plots, line plots, bar plots, and box plots. The package allows users to customize plot appearance, add titles, labels, ticks, and legends, and output the plot as a text-based visualization.
Maintained by Claas Heuer. Last updated 11 months ago.
0.5 match 10 stars 5.86 score 12 scripts
farbfetzen
stressaddition:Modelling Tri-Phasic Concentration-Response Relationships
The stress addition approach is an alternative to the traditional concentration addition or effect addition models. It allows the modelling of tri-phasic concentration-response relationships either as single toxicant experiments, in combination with an environmental stressor or as mixtures of two toxicants. See Liess et al. (2019) <doi:10.1038/s41598-019-51645-4> and Liess et al. (2020) <doi:10.1186/s12302-020-00394-7>.
Maintained by Sebastian Henz. Last updated 4 years ago.
1.9 match 1 stars 1.00 score 1 scripts
sam-data-guy-iam
animalEKF:Extended Kalman Filters for Animal Movement
Synthetic generation of 1-D and 2-D correlated random walks (CRWs) for animal movement with behavioral switching, and particle filter estimation of movement parameters from observed trajectories using Extended Kalman Filter (EKF) model. See Ackerman (2018) <https://digital.library.temple.edu/digital/collection/p245801coll10/id/499150>.
Maintained by Samuel Ackerman. Last updated 1 years ago.
1.9 match 1 stars 1.00 score
imranshakoor
DDPM:Data Sets for Discrete Probability Models
A wide collection of univariate discrete data sets from various applied domains related to distribution theory. The functions allow quick, easy, and efficient access to 100 univariate discrete data sets. The data are related to different applied domains, including medical, reliability analysis, engineering, manufacturing, occupational safety, geological sciences, terrorism, psychology, agriculture, environmental sciences, road traffic accidents, demography, actuarial science, law, and justice. The documentation, along with associated references for further details and uses, is presented.
Maintained by Muhammad Imran. Last updated 2 years ago.
1.8 match 1.00 score