Showing 123 of total 123 results (show query)
hneth
unicol:The Colors of your University
Most universities use specific color combinations to express their unique brand identity. The 'unicol' package provides the colors and color palettes of various universities for easy plotting and printing in R. We collect and provide a diverse range of color palettes for creating scientific visualizations.
Maintained by Hansjoerg Neth. Last updated 7 months ago.
brandingcolorcolor-palettescolor-schemescorporate-designuniversity-colorsvisual-identity
73.6 match 9 stars 6.58 score 10 scripts
mountainmath
cansim:Accessing Statistics Canada Data Table and Vectors
Searches for, accesses, and retrieves Statistics Canada data tables, as well as individual vectors, as tidy data frames. This package enriches the tables with metadata, deals with encoding issues, allows for bilingual English or French language data retrieval, and bundles convenience functions to make it easier to work with retrieved table data. For more efficient data access the package allows for caching data in a local database and database level filtering, data manipulation and summarizing.
Maintained by Jens von Bergmann. Last updated 2 days ago.
33.9 match 45 stars 8.78 score 446 scripts
biometry
bipartite:Visualising Bipartite Networks and Calculating Some (Ecological) Indices
Functions to visualise webs and calculate a series of indices commonly used to describe pattern in (ecological) webs. It focuses on webs consisting of only two levels (bipartite), e.g. pollination webs or predator-prey-webs. Visualisation is important to get an idea of what we are actually looking at, while the indices summarise different aspects of the web's topology.
Maintained by Carsten F. Dormann. Last updated 7 days ago.
13.8 match 37 stars 10.93 score 592 scripts 15 dependents
ropensci
weathercan:Download Weather Data from Environment and Climate Change Canada
Provides means for downloading historical weather data from the Environment and Climate Change Canada website (<https://climate.weather.gc.ca/historical_data/search_historic_data_e.html>). Data can be downloaded from multiple stations and over large date ranges and automatically processed into a single dataset. Tools are also provided to identify stations either by name or proximity to a location.
Maintained by Steffi LaZerte. Last updated 12 days ago.
environment-canadapeer-reviewedweather-dataweather-downloader
16.0 match 107 stars 8.33 score 189 scripts
mhahsler
TSP:Infrastructure for the Traveling Salesperson Problem
Basic infrastructure and some algorithms for the traveling salesperson problem (also traveling salesman problem; TSP). The package provides some simple algorithms and an interface to the Concorde TSP solver and its implementation of the Chained-Lin-Kernighan heuristic. The code for Concorde itself is not included in the package and has to be obtained separately. Hahsler and Hornik (2007) <doi:10.18637/jss.v023.i02>.
Maintained by Michael Hahsler. Last updated 6 months ago.
6.9 match 65 stars 12.40 score 346 scripts 99 dependents
seankross
minimap:Create Tile Grid Maps
Create tile grid maps, which are like choropleth maps except each region is represented with equal visual space.
Maintained by Sean Kross. Last updated 9 years ago.
13.1 match 18 stars 5.30 score 22 scripts
warint
statcanR:Client for Statistics Canada's Open Economic Data
An easy connection with R to Statistics Canada's Web Data Service. Open economic data (formerly known as CANSIM tables, now identified by Product IDs (PID)) are accessible as a data frame, directly in the user's R environment. Warin, Le Duc (2019) <doi:10.6084/m9.figshare.10544735>.
Maintained by Thierry Warin. Last updated 8 months ago.
10.9 match 20 stars 6.06 score 58 scripts
ankonahouston
OralOpioids:Retrieving Oral Opioid Information
Provides details such as Morphine Equivalent Dose (MED), brand name and opioid content which are calculated of all oral opioids authorized for sale by Health Canada and the FDA based on their Drug Identification Number (DIN) or National Drug Code (NDC). MEDs are calculated based on recommendations by Canadian Institute for Health Information (CIHI) and Von Korff et al (2008) and information obtained from Health Canada's Drug Product Database's monthly data dump or FDA Daily database for Canadian and US databases respectively. Please note in no way should output from this package be a substitute for medical advise. All medications should only be consumed on prescription from a licensed healthcare provider.
Maintained by Ankona Banerjee. Last updated 2 months ago.
12.6 match 1 stars 4.18 score 4 scripts
hojsgaard
doBy:Groupwise Statistics, LSmeans, Linear Estimates, Utilities
Utility package containing: 1) Facilities for working with grouped data: 'do' something to data stratified 'by' some variables. 2) LSmeans (least-squares means), general linear estimates. 3) Restrict functions to a smaller domain. 4) Miscellaneous other utilities.
Maintained by Søren Højsgaard. Last updated 5 days ago.
3.4 match 1 stars 14.94 score 3.2k scripts 939 dependents
pachadotdev
canadamaps:Maps of the Political and Administrative Divisions of Canada
Terrestrial maps with simplified topologies for Census Divisions, Agricultural Regions, Economic Regions, Federal Electoral Divisions and Provinces.
Maintained by Mauricio Vargas Sepulveda. Last updated 12 months ago.
15.7 match 2 stars 3.00 score 3 scriptsropensci
tidyhydat:Extract and Tidy Canadian 'Hydrometric' Data
Provides functions to access historical and real-time national 'hydrometric' data from Water Survey of Canada data sources (<https://dd.weather.gc.ca/hydrometric/csv/> and <https://collaboration.cmc.ec.gc.ca/cmc/hydrometrics/www/>) and then applies tidy data principles.
Maintained by Sam Albers. Last updated 5 days ago.
citzgovernment-datahydrologyhydrometricstidy-datawater-resources
4.9 match 71 stars 9.59 score 202 scripts 3 dependents
predictiveecology
LandR:Landscape Ecosystem Modelling in R
Utilities for 'LandR' suite of landscape simulation models. These models simulate forest vegetation dynamics based on LANDIS-II, and incorporate fire and insect disturbance, as well as other important ecological processes. Models are implemented as 'SpaDES' modules.
Maintained by Eliot J B McIntire. Last updated 4 days ago.
ecological-modellinglandscape-ecosystem-modellingspades
7.6 match 17 stars 6.07 score 12 scripts 4 dependents
cshs-hydrology
CSHShydRology:Canadian Hydrological Analyses
A collection of user submitted functions to aid in the analysis of hydrological data.
Maintained by Kevin Shook. Last updated 3 years ago.
8.7 match 4 stars 5.26 score 23 scripts
thibautjombart
adegenet:Exploratory Analysis of Genetic and Genomic Data
Toolset for the exploration of genetic and genomic data. Adegenet provides formal (S4) classes for storing and handling various genetic data, including genetic markers with varying ploidy and hierarchical population structure ('genind' class), alleles counts by populations ('genpop'), and genome-wide SNP data ('genlight'). It also implements original multivariate methods (DAPC, sPCA), graphics, statistical tests, simulation tools, distance and similarity measures, and several spatial methods. A range of both empirical and simulated datasets is also provided to illustrate various methods.
Maintained by Zhian N. Kamvar. Last updated 1 months ago.
3.3 match 182 stars 12.60 score 1.9k scripts 29 dependents
detlew
PowerTOST:Power and Sample Size for (Bio)Equivalence Studies
Contains functions to calculate power and sample size for various study designs used in bioequivalence studies. Use known.designs() to see the designs supported. Power and sample size can be obtained based on different methods, amongst them prominently the TOST procedure (two one-sided t-tests). See README and NEWS for further information.
Maintained by Detlew Labes. Last updated 12 months ago.
4.1 match 20 stars 9.61 score 112 scripts 4 dependents
covid19datahub
COVID19:COVID-19 Data Hub
Unified datasets for a better understanding of COVID-19.
Maintained by Emanuele Guidotti. Last updated 28 days ago.
2019-ncovcoronaviruscovid-19covid-datacovid19-data
3.3 match 252 stars 11.08 score 265 scripts
poissonconsulting
wqbc:Tidy Water Quality Data and Calculate Thresholds for British Columbia
Tidies water quality data and calculates water quality thresholds for British Columbia.
Maintained by Andy Teucher. Last updated 2 months ago.
8.6 match 4.23 score 34 scripts
ryan-riggs
RivRetrieve:Retrieve Global River Gauge Data
Provides access to global river gauge data from a variety of national-level river agencies. The package interfaces with the national-level agency websites to provide access to river gauge locations, river discharge, and river stage. Currently, the package is available for the following countries: Australia, Brazil, Canada, Chile, France, Japan, South Africa, the United Kingdom, and the United States.
Maintained by Ryan Riggs. Last updated 2 months ago.
7.1 match 9 stars 4.95 score 7 scripts
vlucet
rgovcan:Easy Access to the Canadian Open Government Portal
Allows to search for existing resources, including datasets, on the Canadian Open Government portal (<https://open.canada.ca/en>). It is also designed to allow users to easily download a range of files directly from the portal in a reproducible manner.
Maintained by Valentin Lucet. Last updated 2 years ago.
11.5 match 22 stars 3.04 score 7 scripts
urosconf
voronoiTreemap:Voronoi Treemaps with Added Interactivity by Shiny
The d3.js framework with the plugins d3-voronoi-map, d3-voronoi-treemap and d3-weighted-voronoi are used to generate Voronoi treemaps in R and in a shiny application. The computation of the Voronoi treemaps are based on Nocaj and Brandes (2012) <doi:10.1111/j.1467-8659.2012.03078.x>.
Maintained by Alexander Kowarik. Last updated 6 years ago.
6.6 match 56 stars 5.16 score 26 scripts
bpfaff
vars:VAR Modelling
Estimation, lag selection, diagnostic testing, forecasting, causality analysis, forecast error variance decomposition and impulse response functions of VAR models and estimation of SVAR and SVEC models.
Maintained by Bernhard Pfaff. Last updated 12 months ago.
3.8 match 7 stars 8.68 score 2.8k scripts 44 dependents
matthieustigler
partsm:Periodic Autoregressive Time Series Models
Basic functions to fit and predict periodic autoregressive time series models. These models are discussed in the book P.H. Franses (1996) "Periodicity and Stochastic Trends in Economic Time Series", Oxford University Press. Data set analyzed in that book is also provided. NOTE: the package was orphaned during several years. It is now only maintained, but no major enhancements are expected, and the maintainer cannot provide any support.
Maintained by Matthieu Stigler. Last updated 4 years ago.
6.9 match 3 stars 4.57 score 25 scripts
daijiang
phyr:Model Based Phylogenetic Analysis
A collection of functions to do model-based phylogenetic analysis. It includes functions to calculate community phylogenetic diversity, to estimate correlations among functional traits while accounting for phylogenetic relationships, and to fit phylogenetic generalized linear mixed models. The Bayesian phylogenetic generalized linear mixed models are fitted with the 'INLA' package (<https://www.r-inla.org>).
Maintained by Daijiang Li. Last updated 1 years ago.
bayesianglmminlaphylogenyspecies-distribution-modelingopenblascpp
3.4 match 31 stars 8.71 score 107 scripts 2 dependents
epiforecasts
covidregionaldata:Subnational Data for COVID-19 Epidemiology
An interface to subnational and national level COVID-19 data sourced from both official sources, such as Public Health England in the UK, and from other COVID-19 data collections, including the World Health Organisation (WHO), European Centre for Disease Prevention and Control (ECDC), John Hopkins University (JHU), Google Open Data and others. Designed to streamline COVID-19 data extraction, cleaning, and processing from a range of data sources in an open and transparent way. This allows users to inspect and scrutinise the data, and tools used to process it, at every step. For all countries supported, data includes a daily time-series of cases. Wherever available data is also provided for deaths, hospitalisations, and tests. National level data are also supported using a range of sources.
Maintained by Sam Abbott. Last updated 3 years ago.
covid-19dataopen-sciencer6regional-data
5.0 match 37 stars 5.67 score 121 scripts
boost-r
FDboost:Boosting Functional Regression Models
Regression models for functional data, i.e., scalar-on-function, function-on-scalar and function-on-function regression models, are fitted by a component-wise gradient boosting algorithm. For a manual on how to use 'FDboost', see Brockhaus, Ruegamer, Greven (2017) <doi:10.18637/jss.v094.i10>.
Maintained by David Ruegamer. Last updated 3 months ago.
boostingboosting-algorithmsfunction-on-function-regressionfunction-on-scalar-regressionmachine-learningscalar-on-function-regressionvariable-selection
3.3 match 17 stars 8.00 score 98 scripts
tpetzoldt
FAmle:Maximum Likelihood and Bayesian Estimation of Univariate Probability Distributions
Estimate parameters of univariate probability distributions with maximum likelihood and Bayesian methods.
Maintained by Thomas Petzoldt. Last updated 3 years ago.
7.0 match 3.81 score 13 scripts
big-life-lab
cchsflow:Transforming and Harmonizing CCHS Variables
Supporting the use of the Canadian Community Health Survey (CCHS) by transforming variables from each cycle into harmonized, consistent versions that span survey cycles (currently, 2001 to 2018). CCHS data used in this library is accessed and adapted in accordance to the Statistics Canada Open Licence Agreement. This package uses rec_with_table(), which was developed from 'sjmisc' rec(). Lüdecke D (2018). "sjmisc: Data and Variable Transformation Functions". Journal of Open Source Software, 3(26), 754. <doi:10.21105/joss.00754>.
Maintained by Kitty Chen. Last updated 1 years ago.
4.4 match 12 stars 6.02 score 192 scripts
sbgraves237
Ecdat:Data Sets for Econometrics
Data sets for econometrics, including political science.
Maintained by Spencer Graves. Last updated 4 months ago.
3.6 match 2 stars 7.25 score 740 scripts 3 dependents
spedygiorgio
lifecontingencies:Financial and Actuarial Mathematics for Life Contingencies
Classes and methods that allow the user to manage life table, actuarial tables (also multiple decrements tables). Moreover, functions to easily perform demographic, financial and actuarial mathematics on life contingencies insurances calculations are contained therein. See Spedicato (2013) <doi:10.18637/jss.v055.i10>.
Maintained by Giorgio Alfredo Spedicato. Last updated 6 months ago.
actuarialfinanciallife-contingencieslife-insurancecpp
3.6 match 62 stars 7.09 score 156 scripts
chris31415926535
pseudohouseholds:Generate Pseudohouseholds on Road Networks in Regions
Given an arbitrary set of spatial regions and road networks, generate a set of representative points, or pseudohouseholds, that can be used for travel burden analysis. Parallel processing is supported.
Maintained by Christopher Belanger. Last updated 1 years ago.
6.8 match 3.70 score 9 scriptspredictiveecology
SpaDES.core:Core Utilities for Developing and Running Spatially Explicit Discrete Event Models
Provides the core framework for a discrete event system to implement a complete data-to-decisions, reproducible workflow. The core components facilitate the development of modular pieces, and enable the user to include additional functionality by running user-built modules. Includes conditional scheduling, restart after interruption, packaging of reusable modules, tools for developing arbitrary automated workflows, automated interweaving of modules of different temporal resolution, and tools for visualizing and understanding the within-project dependencies. The suggested package 'NLMR' can be installed from the repository (<https://PredictiveEcology.r-universe.dev>).
Maintained by Eliot J B McIntire. Last updated 19 days ago.
discrete-events-simulationssimulation-frameworksimulation-modeling
2.3 match 10 stars 10.61 score 142 scripts 6 dependentspredictiveecology
reproducible:Enhance Reproducibility of R Code
A collection of high-level, machine- and OS-independent tools for making reproducible and reusable content in R. The two workhorse functions are Cache() and prepInputs(). Cache() allows for nested caching, is robust to environments and objects with environments (like functions), and deals with some classes of file-backed R objects e.g., from terra and raster packages. Both functions have been developed to be foundational components of data retrieval and processing in continuous workflow situations. In both functions, efforts are made to make the first and subsequent calls of functions have the same result, but faster at subsequent times by way of checksums and digesting. Several features are still under development, including cloud storage of cached objects allowing for sharing between users. Several advanced options are available, see ?reproducibleOptions().
Maintained by Eliot J B McIntire. Last updated 1 months ago.
reproducibilityreproducible-research
2.3 match 41 stars 10.52 score 122 scripts 15 dependents
jfrench
autoimage:Multiple Heat Maps for Projected Coordinates
Functions for displaying multiple images or scatterplots with a color scale, i.e., heat maps, possibly with projected coordinates. The package relies on the base graphics system, so graphics are rendered rapidly.
Maintained by Joshua French. Last updated 4 years ago.
3.6 match 7 stars 6.73 score 57 scripts 3 dependents
smiljanicm
dendrometeR:Analyzing Dendrometer Data
Various functions to import, verify, process and plot high-resolution dendrometer data using daily and stem-cycle approaches as described in Deslauriers et al, 2007 <doi:10.1016/j.dendro.2007.05.003>. For more details about the package please see: Van der Maaten et al. 2016 <doi:10.1016/j.dendro.2016.06.001>.
Maintained by Marko Smiljanic. Last updated 24 days ago.
6.9 match 3.41 score 13 scripts
reconverse
outbreaks:A Collection of Disease Outbreak Data
Empirical or simulated disease outbreak data, provided either as RData or as text files.
Maintained by Finlay Campbell. Last updated 2 years ago.
3.5 match 51 stars 6.70 score 282 scripts
cran
LMERConvenienceFunctions:Model Selection and Post-Hoc Analysis for (G)LMER Models
The main function of the package is to perform backward selection of fixed effects, forward fitting of the random effects, and post-hoc analysis using parallel capabilities. Other functionality includes the computation of ANOVAs with upper- or lower-bound p-values and R-squared values for each model term, model criticism plots, data trimming on model residuals, and data visualization. The data to run examples is contained in package LCF_data.
Maintained by "Antoine Tremblay, Statistics Canada". Last updated 4 years ago.
7.9 match 2.89 score 77 scripts
bcgov
bcmaps:Map Layers and Spatial Utilities for British Columbia
Various layers of B.C., including administrative boundaries, natural resource management boundaries, census boundaries etc. All layers are available in BC Albers (<https://spatialreference.org/ref/epsg/3005/>) equal-area projection, which is the B.C. government standard. The layers are sourced from the British Columbia and Canadian government under open licenses, including B.C. Data Catalogue (<https://data.gov.bc.ca>), the Government of Canada Open Data Portal (<https://open.canada.ca/en/using-open-data>), and Statistics Canada (<https://www.statcan.gc.ca/en/reference/licence>).
Maintained by Andy Teucher. Last updated 3 months ago.
2.6 match 73 stars 8.65 score 254 scriptsropensci
charlatan:Make Fake Data
Make fake data that looks realistic, supporting addresses, person names, dates, times, colors, coordinates, currencies, digital object identifiers ('DOIs'), jobs, phone numbers, 'DNA' sequences, doubles and integers from distributions and within a range.
Maintained by Roel M. Hogervorst. Last updated 1 months ago.
datadatasetfake-datafakerpeer-reviewed
2.3 match 296 stars 10.06 score 180 scripts 1 dependentspredictiveecology
Require:Installing and Loading R Packages for Reproducible Workflows
A single key function, 'Require' that makes rerun-tolerant versions of 'install.packages' and `require` for CRAN packages, packages no longer on CRAN (i.e., archived), specific versions of packages, and GitHub packages. This approach is developed to create reproducible workflows that are flexible and fast enough to use while in development stages, while able to build snapshots once a stable package collection is found. As with other functions in a reproducible workflow, this package emphasizes functions that return the same result whether it is the first or subsequent times running the function, with subsequent times being sufficiently fast that they can be run every time without undue waiting burden on the user or developer.
Maintained by Eliot J B McIntire. Last updated 15 days ago.
2.4 match 22 stars 9.42 score 144 scripts 13 dependents
davidearn
epigrowthfit:Nonlinear Mixed Effects Models of Epidemic Growth
Maximum likelihood estimation of nonlinear mixed effects models of epidemic growth using Template Model Builder ('TMB'). Enables joint estimation for collections of disease incidence time series, including time series that describe multiple epidemic waves. Supports a set of widely used phenomenological models: exponential, logistic, Richards (generalized logistic), subexponential, and Gompertz. Provides methods for interrogating model objects and several auxiliary functions, including one for computing basic reproduction numbers from fitted values of the initial exponential growth rate. Preliminary versions of this software were applied in Ma et al. (2014) <doi:10.1007/s11538-013-9918-2> and in Earn et al. (2020) <doi:10.1073/pnas.2004904117>.
Maintained by Mikael Jagan. Last updated 25 days ago.
3.8 match 9 stars 5.75 score 45 scripts
ropensci
historydata:Datasets for Historians
These sample data sets are intended for historians learning R. They include population, institutional, religious, military, and prosopographical data suitable for mapping, quantitative analysis, and network analysis.
Maintained by Lincoln Mullen. Last updated 7 months ago.
3.4 match 87 stars 6.19 score 118 scripts
blue-matter
SAMtool:Stock Assessment Methods Toolkit
Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries. 'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting, model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
Maintained by Quang Huynh. Last updated 20 days ago.
3.3 match 3 stars 6.49 score 36 scripts 1 dependents
spkaluzny
splusTimeDate:Times and Dates from 'S-PLUS'
A collection of classes and methods for working with times and dates. The code was originally available in 'S-PLUS'.
Maintained by Stephen Kaluzny. Last updated 2 months ago.
4.3 match 4.94 score 58 scripts 2 dependentspredictiveecology
SpaDES:Develop and Run Spatially Explicit Discrete Event Simulation Models
Metapackage for implementing a variety of event-based models, with a focus on spatially explicit models. These include raster-based, event-based, and agent-based models. The core simulation components (provided by 'SpaDES.core') are built upon a discrete event simulation (DES; see Matloff (2011) ch 7.8.3 <https://nostarch.com/artofr.htm>) framework that facilitates modularity, and easily enables the user to include additional functionality by running user-built simulation modules (see also 'SpaDES.tools'). Included are numerous tools to visualize rasters and other maps (via 'quickPlot'), and caching methods for reproducible simulations (via 'reproducible'). Tools for running simulation experiments are provided by 'SpaDES.experiment'. Additional functionality is provided by the 'SpaDES.addins' and 'SpaDES.shiny' packages.
Maintained by Alex M Chubaty. Last updated 4 months ago.
simulation-frameworksimulation-toolkitspatially-explicit-models
2.4 match 55 stars 8.87 score 227 scripts
mwtoews
seas:Seasonal Analysis and Graphics, Especially for Climatology
Capable of deriving seasonal statistics, such as "normals", and analysis of seasonal data, such as departures. This package also has graphics capabilities for representing seasonal data, including boxplots for seasonal parameters, and bars for summed normals. There are many specific functions related to climatology, including precipitation normals, temperature normals, cumulative precipitation departures and precipitation interarrivals. However, this package is designed to represent any time-varying parameter with a discernible seasonal signal, such as found in hydrology and ecology.
Maintained by Mike Toews. Last updated 3 years ago.
5.3 match 8 stars 3.68 score 60 scripts
middleton-lab
abd:The Analysis of Biological Data
The abd package contains data sets and sample code for The Analysis of Biological Data by Michael Whitlock and Dolph Schluter (2009; Roberts & Company Publishers).
Maintained by Kevin M. Middleton. Last updated 11 months ago.
3.5 match 6 stars 5.53 score 182 scripts 1 dependents
birdscanada
naturecounts:Access and download data on plant and animal populations from NatureCounts
Access and download data on plant and animal populations from various databases through NatureCounts, a service managed by Bird Studies Canada.
Maintained by Denis Lepage. Last updated 6 months ago.
4.7 match 14 stars 4.11 score 46 scriptspredictiveecology
quickPlot:A System of Plotting Optimized for Speed and Modularity
A high-level plotting system, compatible with `ggplot2` objects, maps from `sf`, `terra`, `raster`, `sp`. It is built primarily on the 'grid' package. The objective of the package is to provide a plotting system that is built for speed and modularity. This is useful for quick visualizations when testing code and for plotting multiple figures to the same device from independent sources that may be independent of one another (i.e., different function or modules the create the visualizations). The suggested package 'fastshp' can be installed from the repository (<https://PredictiveEcology.r-universe.dev>).
Maintained by Eliot J B McIntire. Last updated 4 months ago.
2.4 match 6 stars 7.92 score 121 scripts 12 dependents
fishr-core-team
FSAdata:Data to Support Fish Stock Assessment ('FSA') Package
The datasets to support the Fish Stock Assessment ('FSA') package.
Maintained by Derek Ogle. Last updated 2 years ago.
fishfisheriesfisheries-stock-assessmentfishr-websitestock-assessment
3.2 match 13 stars 5.67 score 285 scripts
ericgilleland
ismev:An Introduction to Statistical Modeling of Extreme Values
Functions to support the computations carried out in `An Introduction to Statistical Modeling of Extreme Values' by Stuart Coles. The functions may be divided into the following groups; maxima/minima, order statistics, peaks over thresholds and point processes.
Maintained by Eric Gilleland. Last updated 7 years ago.
3.5 match 1 stars 5.19 score 326 scripts 13 dependentspredictiveecology
SpaDES.tools:Additional Tools for Developing Spatially Explicit Discrete Event Simulation (SpaDES) Models
Provides GIS and map utilities, plus additional modeling tools for developing cellular automata, dynamic raster models, and agent based models in 'SpaDES'. Included are various methods for spatial spreading, spatial agents, GIS operations, random map generation, and others. See '?SpaDES.tools' for an categorized overview of these additional tools. The suggested package 'NLMR' can be installed from the following repository: (<https://PredictiveEcology.r-universe.dev>).
Maintained by Alex M Chubaty. Last updated 4 months ago.
2.3 match 4 stars 7.55 score 52 scripts 6 dependents
wraysmith
caRecall:Government of Canada Vehicle Recalls Database API Wrapper
Provides API access to the Government of Canada Vehicle Recalls Database <https://tc.api.canada.ca/en/detail?api=VRDB> used by the Defect Investigations and Recalls Division for vehicles, tires, and child car seats. The API wrapper provides access to recall summary information searched using make, model, and year range, as well as detailed recall information searched using recall number.
Maintained by Nathan Smith. Last updated 4 years ago.
api-wrappervehicle-recalls-database
3.6 match 4 stars 4.60 score 2 scriptscran
stratification:Univariate Stratification of Survey Populations
Univariate stratification of survey populations with a generalization of the Lavallee-Hidiroglou method of stratum construction. The generalized method takes into account a discrepancy between the stratification variable and the survey variable. The determination of the optimal boundaries also incorporate, if desired, an anticipated non-response, a take-all stratum for large units, a take-none stratum for small units, and a certainty stratum to ensure that some specific units are in the sample. The well known cumulative root frequency rule of Dalenius and Hodges and the geometric rule of Gunning and Horgan are also implemented.
Maintained by Louis-Paul Rivest. Last updated 3 years ago.
6.7 match 2.48 score 1 dependents
pbs-assess
sdmTMB:Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB'
Implements spatial and spatiotemporal GLMMs (Generalized Linear Mixed Effect Models) using 'TMB', 'fmesher', and the SPDE (Stochastic Partial Differential Equation) Gaussian Markov random field approximation to Gaussian random fields. One common application is for spatially explicit species distribution models (SDMs). See Anderson et al. (2024) <doi:10.1101/2022.03.24.485545>.
Maintained by Sean C. Anderson. Last updated 2 days ago.
ecologyglmmspatial-analysisspecies-distribution-modellingtmbcpp
1.5 match 203 stars 10.71 score 848 scripts 1 dependentspredictiveecology
pemisc:Miscellaneous Utilities Developed by the Predictive Ecology Group
Miscellaneous utilities developed by the Predictive Ecology Group (<http://predictiveecology.org>).
Maintained by Eliot J B McIntire. Last updated 3 months ago.
landscape-ecologysimulation-modeling
4.1 match 1 stars 3.83 score 3 scripts 5 dependentsbcgov
ssdtools:Species Sensitivity Distributions
Species sensitivity distributions are cumulative probability distributions which are fitted to toxicity concentrations for different species as described by Posthuma et al.(2001) <isbn:9781566705783>. The ssdtools package uses Maximum Likelihood to fit distributions such as the gamma, log-logistic, log-normal and log-normal log-normal mixture. Multiple distributions can be averaged using Akaike Information Criteria. Confidence intervals on hazard concentrations and proportions are produced by bootstrapping.
Maintained by Joe Thorley. Last updated 24 days ago.
ecotoxicologyenvspecies-sensitivity-distributioncpp
1.5 match 31 stars 10.23 score 111 scripts 4 dependents
jbryer
multilevelPSA:Multilevel Propensity Score Analysis
Conducts and visualizes propensity score analysis for multilevel, or clustered data. Bryer & Pruzek (2011) <doi:10.1080/00273171.2011.636693>.
Maintained by Jason Bryer. Last updated 5 years ago.
3.2 match 16 stars 4.81 score 80 scriptscran
TSA:Time Series Analysis
Contains R functions and datasets detailed in the book "Time Series Analysis with Applications in R (second edition)" by Jonathan Cryer and Kung-Sik Chan.
Maintained by Kung-Sik Chan. Last updated 3 years ago.
3.4 match 2 stars 4.47 score 5 dependents
risktoollib
RTL:Risk Tool Library - Trading, Risk, Analytics for Commodities
A toolkit for Commodities 'analytics', risk management and trading professionals. Includes functions for API calls to <https://commodities.morningstar.com/#/>, <https://developer.genscape.com/>, and <https://www.bankofcanada.ca/valet/docs>.
Maintained by Philippe Cote. Last updated 19 days ago.
analyticsapicommoditiescommodities-apifinancegenscapemorningstarpythonrisk-managementcpp
1.9 match 30 stars 7.51 score 198 scripts
aqlt
rjdqa:Quality Assessment for Seasonal Adjustment
Add-in to the 'RJDemetra' package on seasonal adjustments. It allows to produce dashboards to summarise models and quickly check the quality of the seasonal adjustment.
Maintained by Alain Quartier-la-Tente. Last updated 4 months ago.
jdemetraquality-assessmentopenjdk
3.5 match 2 stars 3.85 score 8 scripts
mlysy
MADPop:MHC Allele-Based Differencing Between Populations
Tools for the analysis of population differences using the Major Histocompatibility Complex (MHC) genotypes of samples having a variable number of alleles (1-4) recorded for each individual. A hierarchical Dirichlet-Multinomial model on the genotype counts is used to pool small samples from multiple populations for pairwise tests of equality. Bayesian inference is implemented via the 'rstan' package. Bootstrapped and posterior p-values are provided for chi-squared and likelihood ratio tests of equal genotype probabilities.
Maintained by Martin Lysy. Last updated 1 years ago.
3.6 match 1 stars 3.70 score 8 scripts
kjhealy
gssrdoc:Document General Social Survey Variable
The General Social Survey (GSS) is a long-running, mostly annual survey of US households. It is administered by the National Opinion Research Center (NORC). This package contains the a tibble with information on the survey variables, together with every variable documented as an R help page. For more information on the GSS see \url{http://gss.norc.org}.
Maintained by Kieran Healy. Last updated 11 months ago.
5.8 match 2.28 score 38 scripts
adamlilith
enmSdmX:Species Distribution Modeling and Ecological Niche Modeling
Implements species distribution modeling and ecological niche modeling, including: bias correction, spatial cross-validation, model evaluation, raster interpolation, biotic "velocity" (speed and direction of movement of a "mass" represented by a raster), interpolating across a time series of rasters, and use of spatially imprecise records. The heart of the package is a set of "training" functions which automatically optimize model complexity based number of available occurrences. These algorithms include MaxEnt, MaxNet, boosted regression trees/gradient boosting machines, generalized additive models, generalized linear models, natural splines, and random forests. To enhance interoperability with other modeling packages, no new classes are created. The package works with 'PROJ6' geodetic objects and coordinate reference systems.
Maintained by Adam B. Smith. Last updated 25 days ago.
bias-correctionbiogeographyecological-niche-modelingecological-niche-modellingniche-modelingniche-modellingspecies-distribution-modelingopenjdk
2.0 match 25 stars 5.62 score 37 scriptscran
BayesGP:Efficient Implementation of Gaussian Process in Bayesian Hierarchical Models
Implements Bayesian hierarchical models with flexible Gaussian process priors, focusing on Extended Latent Gaussian Models and incorporating various Gaussian process priors for Bayesian smoothing. Computations leverage finite element approximations and adaptive quadrature for efficient inference. Methods are detailed in Zhang, Stringer, Brown, and Stafford (2023) <doi:10.1177/09622802221134172>; Zhang, Stringer, Brown, and Stafford (2024) <doi:10.1080/10618600.2023.2289532>; Zhang, Brown, and Stafford (2023) <doi:10.48550/arXiv.2305.09914>; and Stringer, Brown, and Stafford (2021) <doi:10.1111/biom.13329>.
Maintained by Ziang Zhang. Last updated 4 months ago.
3.5 match 3.18 score
mponce0
covid19.analytics:Load and Analyze Live Data from the COVID-19 Pandemic
Load and analyze updated time series worldwide data of reported cases for the Novel Coronavirus Disease (COVID-19) from different sources, including the Johns Hopkins University Center for Systems Science and Engineering (JHU CSSE) data repository <https://github.com/CSSEGISandData/COVID-19>, "Our World in Data" <https://github.com/owid/> among several others. The datasets reporting the COVID-19 cases are available in two main modalities, as a time series sequences and aggregated data for the last day with greater spatial resolution. Several analysis, visualization and modelling functions are available in the package that will allow the user to compute and visualize total number of cases, total number of changes and growth rate globally or for an specific geographical location, while at the same time generating models using these trends; generate interactive visualizations and generate Susceptible-Infected-Recovered (SIR) model for the disease spread.
Maintained by Marcelo Ponce. Last updated 3 years ago.
covid19covid19-datancov2019sars-cov-2
2.0 match 33 stars 5.52 score 20 scripts
canmod
iidda:Processing Infectious Disease Datasets in IIDDA.
Part of an open toolchain for processing infectious disease datasets available through the IIDDA data repository.
Maintained by Steve Walker. Last updated 4 months ago.
1.8 match 6.07 score 133 scripts 3 dependents
gilberto-sassi
geoFKF:Kriging Method for Spatial Functional Data
A Kriging method for functional datasets with spatial dependency. This functional Kriging method avoids the need to estimate the trace-variogram, and the curve is estimated by minimizing a quadratic form. The curves in the functional dataset are smoothed using Fourier series. The functional Kriging of this package is a modification of the method proposed by Giraldo (2011) <doi:10.1007/s10651-010-0143-y>.
Maintained by Gilberto Sassi. Last updated 4 years ago.
4.0 match 1 stars 2.70 score 1 scriptspredictiveecology
map:Defines a meta class of geographical objects, the 'map' class, and associated tools
The 'map' class is a collection of geospatial objects (e.g., from the 'sp', 'raster', 'sf', and 'terra' packages), with a number of metadata additions to enable powerful methods, e.g., for leaflet, reproducible GIS etc.
Maintained by Alex M Chubaty. Last updated 1 months ago.
2.4 match 2 stars 4.33 score 178 scripts 1 dependents
landscitech
roads:Road Network Projection
Iterative least cost path and minimum spanning tree methods for projecting forest road networks. The methods connect a set of target points to an existing road network using 'igraph' <https://igraph.org> to identify least cost routes. The cost of constructing a road segment between adjacent pixels is determined by a user supplied weight raster and a weight function; options include the average of adjacent weight raster values, and a function of the elevation differences between adjacent cells that penalizes steep grades. These road network projection methods are intended for integration into R workflows and modelling frameworks used for forecasting forest change, and can be applied over multiple time-steps without rebuilding a graph at each time-step.
Maintained by Sarah Endicott. Last updated 7 months ago.
1.5 match 4 stars 6.58 score 29 scripts
arutools
ARUtools:Management and Processing of Autonomous Recording Unit (ARU) Data
Parse Autonomous Recording Unit (ARU) data and for sub-sampling recordings. Extract Metadata from your recordings, select a subset of recordings for interpretation, and prepare files for processing on the 'WildTrax' <https://wildtrax.ca/> platform. Read and process metadata from recordings collected using the SongMeter and BAR-LT types of ARUs.
Maintained by David Hope. Last updated 4 months ago.
1.6 match 6.30 score 26 scripts
mohanad-zaghloul
LMoFit:Advanced L-Moment Fitting of Distributions
A complete framework for frequency analysis is provided by 'LMoFit'. It has functions related to the determination of sample L-moments as in Hosking, J.R.M. (1990) <doi:10.1111/j.2517-6161.1990.tb01775.x>, the fitting of various distributions as in Zaghloul et al. (2020) <doi:10.1016/j.advwatres.2020.103720> and Hosking, J.R.M. (2019) <https://CRAN.R-project.org/package=lmom>, besides plotting and manipulating L-space diagrams as in Papalexiou, S.M. & Koutsoyiannis, D. (2016) <doi:10.1016/j.advwatres.2016.05.005> for two-shape parametric distributions on the L-moment ratio diagram. Additionally, the quantile, probability density, and cumulative probability functions of various distributions are provided in a user-friendly manner.
Maintained by Mohanad Zaghloul. Last updated 10 months ago.
4.9 match 2.00 score 3 scripts
jeffreyracine
np:Nonparametric Kernel Smoothing Methods for Mixed Data Types
Nonparametric (and semiparametric) kernel methods that seamlessly handle a mix of continuous, unordered, and ordered factor data types. We would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC, <https://www.nserc-crsng.gc.ca/>), the Social Sciences and Humanities Research Council of Canada (SSHRC, <https://www.sshrc-crsh.gc.ca/>), and the Shared Hierarchical Academic Research Computing Network (SHARCNET, <https://sharcnet.ca/>). We would also like to acknowledge the contributions of the GNU GSL authors. In particular, we adapt the GNU GSL B-spline routine gsl_bspline.c adding automated support for quantile knots (in addition to uniform knots), providing missing functionality for derivatives, and for extending the splines beyond their endpoints.
Maintained by Jeffrey S. Racine. Last updated 1 months ago.
0.8 match 49 stars 12.64 score 672 scripts 44 dependentsgilberto-sassi
geoFourierFDA:Ordinary Functional Kriging Using Fourier Smoothing and Gaussian Quadrature
Implementation of the ordinary functional kriging method proposed by Giraldo (2011) <doi:10.1007/s10651-010-0143-y>. This implements an alternative method to estimate the trace-variogram using Fourier Smoothing and Gaussian Quadrature.
Maintained by Gilberto Sassi. Last updated 4 years ago.
3.5 match 2.70 score 3 scriptspredictiveecology
scfmutils:Tools and Utilities for Working With the SCFM Wildfire Simulation Model
The original fire model is described by Cumming et al. (1998), and more accessibly in Armstrong and Cumming (2003). It has recently been implemented as a collection of 'SpaDES' modules by Cumming, McIntire, Eddy, and Chubaty, available from <https://github.com/PredictiveEcology/scfm>.
Maintained by Alex M Chubaty. Last updated 4 days ago.
2.3 match 3.93 score
runkelcorey
valet:Provide R Client to the Bank of Canada's Valet API
The Bank of Canada updated their Valet API <https://www.bankofcanada.ca/valet/docs>, and no R client currently exists. This provides access to all of Valet's endpoints and serves responses in wide format easy for researchers to handle but also provides tools to access API responses as a list.
Maintained by Corey Runkel. Last updated 3 years ago.
3.4 match 2.70 score 2 scripts
desiquintans
electivity:Algorithms for Electivity Indices
Provides all electivity algorithms (including Vanderploeg and Scavia electivity) that were examined in Lechowicz (1982) <doi:10.1007/BF00349007>, plus the example data that were provided for moth resource utilisation.
Maintained by Desi Quintans. Last updated 6 years ago.
3.3 match 1 stars 2.70 score 1 scripts
cseljatib
datana:Datasets and Functions to Accompany Analisis De Datos Con R
Datasets and functions to accompany the book 'Analisis de datos con el programa estadistico R: una introduccion aplicada' by Salas-Eljatib (2021, ISBN: 9789566086109). The package helps carry out data management, exploratory analyses, and model fitting.
Maintained by Christian Salas-Eljatib. Last updated 6 months ago.
6.7 match 1.30 score 1 scriptspredictiveecology
SpaDES.project:Project Templates Using 'SpaDES'
Quickly setup a 'SpaDES' project directories and add modules using templates.
Maintained by Eliot J B McIntire. Last updated 2 days ago.
1.3 match 3 stars 6.66 score 21 scriptspredictiveecology
SpaDES.addins:Development Tools for 'SpaDES' and 'SpaDES' Modules
Provides 'RStudio' addins for 'SpaDES' packages and 'SpaDES' module development. See '?SpaDES.addins' for an overview of the tools provided.
Maintained by Alex M Chubaty. Last updated 4 months ago.
2.5 match 1 stars 3.30 score
vathymut
dsos:Dataset Shift with Outlier Scores
Test for no adverse shift in two-sample comparison when we have a training set, the reference distribution, and a test set. The approach is flexible and relies on a robust and powerful test statistic, the weighted AUC. Technical details are in Kamulete, V. M. (2021) <arXiv:1908.04000>. Modern notions of outlyingness such as trust scores and prediction uncertainty can be used as the underlying scores for example.
Maintained by Vathy M. Kamulete. Last updated 2 years ago.
data-driftdata-validationdataset-shiftsdrift-detectionmachine-learningmlopsmodel-monitoringmodel-validationperformance-monitoringstatistical-process-controlstatistical-tests
1.6 match 2 stars 5.08 score 40 scriptspoissonconsulting
bboutools:Boreal Caribou Survival, Recruitment and Population Growth
Estimates annual survival, recruitment and population growth for boreal caribou populations using Bayesian and Maximum Likelihood models with fixed and random effects.
Maintained by Seb Dalgarno. Last updated 2 months ago.
1.5 match 1 stars 5.15 score 13 scripts 2 dependentspredictiveecology
SpaDES.experiment:Simulation Experiments Within The SpaDES Ecosystem
Tools to do simulation experiments within the SpaDES ecosystem. This includes replication, parameter sweeps, scenario analysis, pattern oriented modeling, and simulation experiments. The package introduces a new object class, the simLists, which is an environment that contains many simList class objects. This package also includes tools to do post hoc analyses of such simLists objects.
Maintained by Eliot J B McIntire. Last updated 4 months ago.
2.4 match 1 stars 3.30 score 2 scripts
nrcan
PlotFTIR:Plot FTIR Spectra
The goal of 'PlotFTIR' is to easily and quickly kick-start the production of journal-quality Fourier Transform Infra-Red (FTIR) spectral plots in R using 'ggplot2'. The produced plots can be published directly or further modified by 'ggplot2' functions. L'objectif de 'PlotFTIR' est de démarrer facilement et rapidement la production des tracés spectraux de spectroscopie infrarouge à transformée de Fourier (IRTF) de qualité journal dans R à l'aide de 'ggplot2'. Les tracés produits peuvent être publiés directement ou modifiés davantage par les fonctions 'ggplot2'.
Maintained by Philip Bulsink. Last updated 1 months ago.
1.5 match 4.98 score 5 scriptspoissonconsulting
bbousims:Simulate Boreal Caribou Survival, Recruitment and Population Growth
Simulates survival and recruitment data for boreal caribou populations using hierarchical Bayesian models.
Maintained by Seb Dalgarno. Last updated 4 months ago.
1.5 match 4.78 score 6 scripts 1 dependentsropensci
mbquartR:Finding Manitoba Quarter Sections
This package has four main functions: 1) download the Manitoba Original Survey Legal Descriptions data set; 2) find the coordinates of a quarter sections given the legal land description (e.g., "NE-11-33-29W"); 3) find the legal land description using coordinates (lat and long); and 4) plot these points on a map.
Maintained by Alex Koiter. Last updated 5 days ago.
1.7 match 4.15 scorepredictiveecology
peutils:Utilities Developed by the Predictive Ecology Group
Dependency-free utilities developed by the Predictive Ecology Group (<http://predictiveecology.org>). (Do not depend on contributed R packages).
Maintained by Eliot J B McIntire. Last updated 1 years ago.
2.4 match 2.95 score 6 dependentsmountainmath
cancensus:Access, Retrieve, and Work with Canadian Census Data and Geography
Integrated, convenient, and uniform access to Canadian Census data and geography retrieved using the 'CensusMapper' API. This package produces analysis-ready tidy data frames and spatial data in multiple formats, as well as convenience functions for working with Census variables, variable hierarchies, and region selection. API keys are freely available with free registration at <https://censusmapper.ca/api>. Census data and boundary geometries are reproduced and distributed on an "as is" basis with the permission of Statistics Canada (Statistics Canada 2001; 2006; 2011; 2016; 2021).
Maintained by Dmitry Shkolnik. Last updated 1 years ago.
0.8 match 82 stars 8.80 score 414 scripts
biostats-dev
ggsurveillance:Tools for Outbreak Investigation/Infectious Disease Surveillance
Create epicurves or epigantt charts in 'ggplot2'. Prepare data for visualisation or other reporting for infectious disease surveillance and outbreak investigation. Includes tidy functions to solve date based transformations for common reporting tasks, like (A) seasonal date alignment for respiratory disease surveillance, (B) date-based case binning based on specified time intervals like isoweek, epiweek, month and more, (C) automated detection and marking of the new year based on the date/datetime axis of the 'ggplot2'. An introduction on how to use epicurves can be found on the US CDC website (2012, <https://www.cdc.gov/training/quicklearns/epimode/index.html>).
Maintained by Alexander Bartel. Last updated 15 days ago.
epidemiologyinfectious-disease-surveillanceinfectious-diseasesoutbreaks
1.3 match 2 stars 5.31 score
huacheng1985
catR:Generation of IRT Response Patterns under Computerized Adaptive Testing
Provides routines for the generation of response patterns under unidimensional dichotomous and polytomous computerized adaptive testing (CAT) framework. It holds many standard functions to estimate ability, select the first item(s) to administer and optimally select the next item, as well as several stopping rules. Options to control for item exposure and content balancing are also available (Magis and Barrada (2017) <doi:10.18637/jss.v076.c01>).
Maintained by Cheng Hua. Last updated 3 years ago.
1.6 match 3 stars 4.14 score 107 scripts 1 dependents
youhuachen
RSE:Number of Newly Discovered Rare Species Estimation
A Bayesian-weighted estimator and two unweighted estimators are developed to estimate the number of newly found rare species in additional ecological samples. Among these methods, the Bayesian-weighted estimator and an unweighted (Chao-derived) estimator are of high accuracy and recommended for practical applications. Technical details of the proposed estimators have been well described in the following paper: Shen TJ, Chen YH (2018) A Bayesian weighted approach to predicting the number of newly discovered rare species. Conservation Biology, In press.
Maintained by Youhua Chen. Last updated 6 years ago.
3.3 match 2.03 score 18 scriptsjeffreyracine
crs:Categorical Regression Splines
Regression splines that handle a mix of continuous and categorical (discrete) data often encountered in applied settings. I would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC, <https://www.nserc-crsng.gc.ca>), the Social Sciences and Humanities Research Council of Canada (SSHRC, <https://www.sshrc-crsh.gc.ca>), and the Shared Hierarchical Academic Research Computing Network (SHARCNET, <https://www.sharcnet.ca>). We would also like to acknowledge the contributions of the GNU GSL authors. In particular, we adapt the GNU GSL B-spline routine gsl_bspline.c adding automated support for quantile knots (in addition to uniform knots), providing missing functionality for derivatives, and for extending the splines beyond their endpoints.
Maintained by Jeffrey S. Racine. Last updated 3 months ago.
0.8 match 17 stars 8.30 score 90 scripts 1 dependents
ropenspain
MicroDatosEs:Utilities for Official Spanish Microdata
Provides utilities for reading and processing microdata from Spanish official statistics with R.
Maintained by Carlos J. Gil Bellosta. Last updated 1 years ago.
1.6 match 13 stars 4.04 score 17 scriptspredictiveecology
LandWebUtils:Helper functions for the LandWeb project
Additional utilities for LandWeb analyses.
Maintained by Alex M Chubaty. Last updated 1 months ago.
landscape-ecologysimulation-modeling
2.4 match 2 stars 2.60 score 2 scriptspoissonconsulting
ssdtests:Tests for ssdtools
Tests for ssdtools package.
Maintained by Joe Thorley. Last updated 12 days ago.
1.5 match 3.60 score 2 scripts
pbs-software
PBSmapping:Mapping Fisheries Data and Spatial Analysis Tools
This software has evolved from fisheries research conducted at the Pacific Biological Station (PBS) in 'Nanaimo', British Columbia, Canada. It extends the R language to include two-dimensional plotting features similar to those commonly available in a Geographic Information System (GIS). Embedded C code speeds algorithms from computational geometry, such as finding polygons that contain specified point events or converting between longitude-latitude and Universal Transverse Mercator (UTM) coordinates. Additionally, we include 'C++' code developed by Angus Johnson for the 'Clipper' library, data for a global shoreline, and other data sets in the public domain. Under the user's R library directory '.libPaths()', specifically in './PBSmapping/doc', a complete user's guide is offered and should be consulted to use package functions effectively.
Maintained by Rowan Haigh. Last updated 6 months ago.
0.5 match 11 stars 10.29 score 652 scripts 9 dependentspoissonconsulting
bboushiny:Shiny App for Analysing Boreal Caribou Surival, Recruitment and Lambda
Use Bayesian methods to calculate survival, recruitment and lambda as well as confidence intervals.
Maintained by Pearson Ayla. Last updated 2 months ago.
1.5 match 3.32 score 3 scripts 1 dependents
alec42
Distributacalcul:Probability Distribution Functions
Calculates expected values, variance, different moments (kth moment, truncated mean), stop-loss, mean excess loss, Value-at-Risk (VaR) and Tail Value-at-Risk (TVaR) as well as some density and cumulative (survival) functions of continuous, discrete and compound distributions. This package also includes a visual 'Shiny' component to enable students to visualize distributions and understand the impact of their parameters. This package is intended to expand the 'stats' package so as to enable students to develop an intuition for probability.
Maintained by Alec James van Rassel. Last updated 1 years ago.
1.5 match 2 stars 3.30 score 9 scripts
jlswall
M3:Reading M3 Files
Provides functions to read in and manipulate air quality model output from Models3-formatted files. This format is used by the Community Multiscale Air Quality (CMAQ) model.
Maintained by Jenise Swall. Last updated 9 months ago.
1.8 match 2.64 score 44 scriptspredictiveecology
pedev:Predictive Ecology Development Tools
Miscellaneous development tools developed by the Predictive Ecology Group (<https://predictiveecology.org>).
Maintained by Eliot J B McIntire. Last updated 4 months ago.
2.4 match 1 stars 1.70 scorebcgov
fasstr:Analyze, Summarize, and Visualize Daily Streamflow Data
The Flow Analysis Summary Statistics Tool for R, 'fasstr', provides various functions to tidy and screen daily stream discharge data, calculate and visualize various summary statistics and metrics, and compute annual trending and volume frequency analyses. It features useful function arguments for filtering of and handling dates, customizing data and metrics, and the ability to pull daily data directly from the Water Survey of Canada hydrometric database (<https://collaboration.cmc.ec.gc.ca/cmc/hydrometrics/www/>).
Maintained by Jon Goetz. Last updated 6 months ago.
bcgovforfrequency-analysishydathydrologystreamflowsummary-statisticstrendswater
0.5 match 57 stars 7.48 score 89 scripts
rainers48
tsapp:Time Series, Analysis and Application
Accompanies the book Rainer Schlittgen and Cristina Sattarhoff (2020) <https://www.degruyter.com/view/title/575978> "Angewandte Zeitreihenanalyse mit R, 4. Auflage" . The package contains the time series and functions used therein. It was developed over many years teaching courses about time series analysis.
Maintained by Rainer Schlittgen. Last updated 3 years ago.
3.3 match 1.00 score 1 scripts
eiotoakhia
ardl.nardl:Linear and Nonlinear Autoregressive Distributed Lag Models: General-to-Specific Approach
Estimate the linear and nonlinear autoregressive distributed lag (ARDL & NARDL) models and the corresponding error correction models, and test for longrun and short-run asymmetric. The general-to-specific approach is also available in estimating the ARDL and NARDL models. The Pesaran, Shin & Smith (2001) (<doi:10.1002/jae.616>) bounds test for level relationships is also provided. The 'ardl.nardl' package also performs short-run and longrun symmetric restrictions available at Shin et al. (2014) <doi:10.1007/978-1-4899-8008-3_9> and their corresponding tests.
Maintained by Eric I. Otoakhia. Last updated 1 years ago.
3.3 match 1 stars 1.00 scorecran
portes:Portmanteau Tests for Time Series Models
Contains common univariate and multivariate portmanteau test statistics for time series models. These tests are based on using asymptotic distributions such as chi-square distribution and based on using the Monte Carlo significance tests. Also, it can be used to simulate from univariate and multivariate seasonal time series models.
Maintained by Esam Mahdi. Last updated 2 years ago.
3.3 match 1.00 scorecran
IndGenErrors:Tests of Independence Between Innovations of Generalized Error Models
Computation of test statistics of independence between (continuous) innovations of time series. They can be used with stochastic volatility models and Hidden Markov Models (HMM). This improves the results in Duchesne, Ghoudi & Remillard (2012) <doi:10.1002/cjs.11141>.
Maintained by Bruno N Remillard. Last updated 2 months ago.
3.2 match 1.00 scoreropensci
bikedata:Download and Aggregate Data from Public Hire Bicycle Systems
Download and aggregate data from all public hire bicycle systems which provide open data, currently including 'Santander' Cycles in London, U.K.; from the U.S.A., 'Ford GoBike' in San Francisco CA, 'citibike' in New York City NY, 'Divvy' in Chicago IL, 'Capital Bikeshare' in Washington DC, 'Hubway' in Boston MA, 'Metro' in Los Angeles LA, 'Indego' in Philadelphia PA, and 'Nice Ride' in Minnesota; 'Bixi' from Montreal, Canada; and 'mibici' from Guadalajara, Mexico.
Maintained by Mark Padgham. Last updated 1 years ago.
bicycle-hire-systemsbike-hire-systemsbike-hirebicycle-hiredatabasebike-datapeer-reviewedcpp
0.5 match 83 stars 5.97 score 28 scripts
wiiison
onmaRg:Import Public Health Ontario's Ontario Marginalization Index
The Ontario Marginalization Index is a socioeconomic model that is built on Statistics Canada census data. The model consists of four dimensions: In 2021, these dimensions were updated to "Material Resources" (previously called "Material Deprivation"), "Households and Dwellings" (previously called "Residential Instability"), "Age and Labour Force" (previously called "Dependency"), and "Racialized and Newcomer Populations" (previously called "Ethnic Concentration"). This update reflects a movement away from deficit-based language. 2021 data will load with these new dimension names, wheras 2011 and 2016 data will load with the historical dimension names. Each of these dimensions are imported for a variety of geographic levels (DA, CD, etc.) for the 2021, 2011 and 2016 administrations of the census. These data sets contribute to community analysis of equity with respect to Ontario's Anti-Racism Act. The Ontario Marginalization Index data is retrieved from the Public Health Ontario website: <https://www.publichealthontario.ca/en/data-and-analysis/health-equity/ontario-marginalization-index>. The shapefile data is retrieved from the Statistics Canada website: <https://www12.statcan.gc.ca/census-recensement/2011/geo/bound-limit/bound-limit-eng.cfm>.
Maintained by William Conley. Last updated 5 months ago.
healthonmargsocioeconomic-indicators
0.8 match 3.70 score 7 scripts
pedersen-fisheries-lab
sspm:Spatial Surplus Production Model Framework for Northern Shrimp Populations
Implement a GAM-based (Generalized Additive Models) spatial surplus production model (spatial SPM), aimed at modeling northern shrimp population in Atlantic Canada but potentially to any stock in any location. The package is opinionated in its implementation of SPMs as it internally makes the choice to use penalized spatial gams with time lags. However, it also aims to provide options for the user to customize their model. The methods are described in Pedersen et al. (2022, <https://www.dfo-mpo.gc.ca/csas-sccs/Publications/ResDocs-DocRech/2022/2022_062-eng.html>).
Maintained by Valentin Lucet. Last updated 1 months ago.
0.5 match 3 stars 5.28 score 21 scripts
hidef-aerial-surveying
stochLAB:Stochastic Collision Risk Model
Collision Risk Models for avian fauna (seabird and migratory birds) at offshore wind farms. The base deterministic model is derived from Band (2012) <https://tethys.pnnl.gov/publications/using-collision-risk-model-assess-bird-collision-risks-offshore-wind-farms>. This was further expanded on by Masden (2015) <doi:10.7489/1659-1> and code used here is heavily derived from this work with input from Dr A. Cook at the British Trust for Ornithology. These collision risk models are useful for marine ornithologists who are working in the offshore wind industry, particularly in UK waters. However, many of the species included in the stochastic collision risk models (stoch_crm) can also be found in the North Atlantic in the United States and Canada, and could be applied there.
Maintained by Grant Humphries. Last updated 2 years ago.
collision-riskmigratoryspeciesoffshore-windseabirds
0.5 match 6 stars 4.78 score 10 scripts
poissonconsulting
bboudata:Data for bbou Project
This package contains boreal caribou demographic data which can be used as validation for the associated shiny-app and analysis. The overall goal of the bbou packages is to develop a more standardized and consistent method for the comparison of boreal caribou survival rates, recruitment and population dynamics across Canada.
Maintained by Ayla Pearson. Last updated 2 months ago.
0.5 match 3.73 score 8 scripts 3 dependents
imranshakoor
DataSetsUni:A Collection of Univariate Data Sets
A collection of widely used univariate data sets of various applied domains on applications of distribution theory. The functions allow researchers and practitioners to quickly, easily, and efficiently access and use these data sets. The data are related to different applied domains and as follows: Bio-medical, survival analysis, medicine, reliability analysis, hydrology, actuarial science, operational research, meteorology, extreme values, quality control, engineering, finance, sports and economics. The total 100 data sets are documented along with associated references for further details and uses.
Maintained by Muhammad Imran. Last updated 2 years ago.
1.7 match 1.00 score 1 scripts
burch-cm
altfuelr:Provides an Interface to the NREL Alternate Fuels Locator
Provides a number of functions to access the National Energy Research Laboratory Alternate Fuel Locator API <https://developer.nrel.gov/docs/transportation/alt-fuel-stations-v1/>. The Alternate Fuel Locator shows the location of alternate fuel stations in the United States and Canada. This package also includes the data from the US Department of Energy Alternate Fuel database as a data set.
Maintained by Christopher Burch. Last updated 4 years ago.
0.5 match 2 stars 3.00 score 5 scripts
rafael-ayala
NutrienTrackeR:Food Composition Information and Dietary Assessment
Provides a tool set for food information and dietary assessment. It uses food composition data from several reference databases, including: 'USDA' (United States), 'CIQUAL' (France), 'BEDCA' (Spain), 'CNF' (Canada) and 'STFCJ' (Japan). 'NutrienTrackeR' calculates the intake levels for both macronutrient and micronutrients, and compares them with the recommended dietary allowances (RDA). It includes a number of visualization tools, such as time series plots of nutrient intake, and pie-charts showing the main foods contributing to the intake level of a given nutrient. A shiny app exposing the main functionalities of the package is also provided.
Maintained by Rafael Ayala. Last updated 2 years ago.
0.5 match 2.18 score 15 scripts
hydauer
FlowScreen:Daily Streamflow Trend and Change Point Screening
Screens daily streamflow time series for temporal trends and change-points. This package has been primarily developed for assessing the quality of daily streamflow time series. It also contains tools for plotting and calculating many different streamflow metrics. The package can be used to produce summary screening plots showing change-points and significant temporal trends for high flow, low flow, and/or baseflow statistics, or it can be used to perform more detailed hydrological time series analyses. The package was designed for screening daily streamflow time series from Water Survey Canada and the United States Geological Survey but will also work with streamflow time series from many other agencies.
Maintained by Jennifer Dierauer. Last updated 6 years ago.
0.5 match 1 stars 1.93 score 43 scriptscran
CANSIM2R:Directly Extracts Complete CANSIM Data Tables
Extract CANSIM (Statistics Canada) tables and transform them into readily usable data in panel (wide) format. It can also extract more than one table at a time and produce the resulting merge by time period and geographical region.
Maintained by Marco Lugo. Last updated 7 years ago.
0.5 match 6 stars 1.78 scorecran
onc.api:Oceans 2.0 API Client Library
Allows users to discover and retrieve Ocean Networks Canada's oceanographic data in raw, text, image, audio, video or any other format available. Provides a class that wraps web service calls and business logic so that users can download data with a single line of code.
Maintained by Bennit Mueller. Last updated 4 years ago.
0.5 match 1.00 score
rtanglao
ig.vancouver.2014.topcolour:Instagram 2014 Vancouver Top Colour Dataset
A dataset of the top colours of photos from Instagram taken in 2014 in the city of Vancouver, British Columbia, Canada. It consists of: top colour and counts data. This data was obtained using the Instagram API. Instagram is a web photo sharing service. It can be found at: <https://instagram.com>. The Instagram API is documented at: <https://instagram.com/developer/>.
Maintained by Roland Tanglao. Last updated 10 years ago.
0.5 match 1.00 score 2 scripts
idmorley
OHCSpackage:Prepare Housing Data for Analysis
Prepares census and core housing needs data, specifically designed for use with Statistics Canada data and standardized input data. The package offers functions for tidying, organizing, and splitting complex data tables, making it easier for users to perform analyses on the data. 'OHCSpackage''' is particularly useful for those working with census data that has a consistent format, number of rows, and number of columns. With this package, users can save time and streamline their data preparation processes.
Maintained by Ilythia Morley. Last updated 2 years ago.
0.5 match 1.00 score 2 scripts