Showing 40 of total 40 results (show query)
tidyverse
readxl:Read Excel Files
Import excel files into R. Supports '.xls' via the embedded 'libxls' C library <https://github.com/libxls/libxls> and '.xlsx' via the embedded 'RapidXML' C++ library <https://rapidxml.sourceforge.net/>. Works on Windows, Mac and Linux without external dependencies.
Maintained by Jennifer Bryan. Last updated 9 days ago.
13.4 match 734 stars 20.85 score 160k scripts 815 dependents
sametsoekel
XLS:A Modeling Approach that Optimizes Future Errors in Least Squares
Given the date column as an ascending entry, future errors are included in the sum of squares of error that should be minimized based on the number of steps and weights you determine. Thus, it is prevented that the variables affect each other's coefficients unrealistically.
Maintained by Samet Sokel. Last updated 3 years ago.
61.8 match 2.70 score 10 scripts
marcschwartz
WriteXLS:Cross-Platform Perl Based R Function to Create Excel 2003 (XLS) and Excel 2007 (XLSX) Files
Cross-platform Perl based R function to create Excel 2003 (XLS) and Excel 2007 (XLSX) files from one or more data frames. Each data frame will be written to a separate named worksheet in the Excel spreadsheet. The worksheet name will be the name of the data frame it contains or can be specified by the user.
Maintained by Marc Schwartz. Last updated 8 months ago.
4.8 match 19 stars 8.59 score 758 scripts 22 dependents
ycphs
openxlsx:Read, Write and Edit xlsx Files
Simplifies the creation of Excel .xlsx files by providing a high level interface to writing, styling and editing worksheets. Through the use of 'Rcpp', read/write times are comparable to the 'xlsx' and 'XLConnect' packages with the added benefit of removing the dependency on Java.
Maintained by Jan Marvin Garbuszus. Last updated 2 months ago.
1.7 match 232 stars 18.98 score 20k scripts 270 dependents
ddotta
tablexlsx:Export Data Frames to Excel Workbook
Collection of functions that allow to export data frames to excel workbook.
Maintained by Damien Dotta. Last updated 5 months ago.
5.5 match 16 stars 5.68 score 8 scripts
bcgov
fasstr:Analyze, Summarize, and Visualize Daily Streamflow Data
The Flow Analysis Summary Statistics Tool for R, 'fasstr', provides various functions to tidy and screen daily stream discharge data, calculate and visualize various summary statistics and metrics, and compute annual trending and volume frequency analyses. It features useful function arguments for filtering of and handling dates, customizing data and metrics, and the ability to pull daily data directly from the Water Survey of Canada hydrometric database (<https://collaboration.cmc.ec.gc.ca/cmc/hydrometrics/www/>).
Maintained by Jon Goetz. Last updated 6 months ago.
bcgovforfrequency-analysishydathydrologystreamflowsummary-statisticstrendswater
3.4 match 57 stars 7.48 score 89 scripts
asitav-sen
KoboconnectR:Download Data from Kobotoolbox to R
Wrapper for 'Kobotoolbox' APIs ver 2 mentioned at <https://support.kobotoolbox.org/api.html>, to download data from 'Kobotoolbox' to R. Small and simple package that adds immense convenience for the data professionals using 'Kobotoolbox'.
Maintained by Asitav Sen. Last updated 5 months ago.
4.3 match 13 stars 5.29 score 6 scripts
nutriverse
riycf:Utilities for Calculating Infant and Young Child Feeding Indicators
This package aims to generate updated indicators to assess infant and young child feeding (IYCF) practices at the individual under 2 years old children level. The indicators were developed using the technical guideline from the Indicators for assessing infant and young child feeding practices: definitions and measurement methods <https://www.who.int/publications/i/item/9789240018389>.
Maintained by Nicholus Tint Zaw. Last updated 1 months ago.
5.8 match 2 stars 3.60 score
bioc
marray:Exploratory analysis for two-color spotted microarray data
Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.
Maintained by Yee Hwa (Jean) Yang. Last updated 5 months ago.
microarraytwochannelpreprocessing
2.3 match 8.92 score 222 scripts 37 dependents
talgalili
installr:Using R to Install Stuff on Windows OS (Such As: R, 'Rtools', 'RStudio', 'Git', and More!)
R is great for installing software. Through the 'installr' package you can automate the updating of R (on Windows, using updateR()) and install new software. Software installation is initiated through a GUI (just run installr()), or through functions such as: install.Rtools(), install.pandoc(), install.git(), and many more. The updateR() command performs the following: finding the latest R version, downloading it, running the installer, deleting the installation file, copy and updating old packages to the new R installation.
Maintained by Tal Galili. Last updated 1 years ago.
1.8 match 273 stars 10.19 score 1.2k scripts
isubirana
compareGroups:Descriptive Analysis by Groups
Create data summaries for quality control, extensive reports for exploring data, as well as publication-ready univariate or bivariate tables in several formats (plain text, HTML,LaTeX, PDF, Word or Excel. Create figures to quickly visualise the distribution of your data (boxplots, barplots, normality-plots, etc.). Display statistics (mean, median, frequencies, incidences, etc.). Perform the appropriate tests (t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...) depending on the nature of the described variable (normal, non-normal or qualitative). Summarize genetic data (Single Nucleotide Polymorphisms) data displaying Allele Frequencies and performing Hardy-Weinberg Equilibrium tests among other typical statistics and tests for these kind of data.
Maintained by Isaac Subirana. Last updated 18 days ago.
comparegroupsdescriptive-statisticsplotreporttable
1.7 match 35 stars 8.51 score 396 scripts 1 dependentsbioc
isobar:Analysis and quantitation of isobarically tagged MSMS proteomics data
isobar provides methods for preprocessing, normalization, and report generation for the analysis of quantitative mass spectrometry proteomics data labeled with isobaric tags, such as iTRAQ and TMT. Features modules for integrating and validating PTM-centric datasets (isobar-PTM). More information on http://www.ms-isobar.org.
Maintained by Florian P Breitwieser. Last updated 5 months ago.
immunooncologyproteomicsmassspectrometrybioinformaticsmultiplecomparisonsqualitycontrol
2.0 match 10 stars 6.96 score 19 scripts
feddelegrand7
ralger:Easy Web Scraping
The goal of 'ralger' is to facilitate web scraping in R.
Maintained by Mohamed El Fodil Ihaddaden. Last updated 8 months ago.
dataextractionwebcrawlingwebscraper-websitewebscraping
1.7 match 155 stars 7.41 score 33 scripts
tntp
tntpr:Data Analysis Tools Customized for TNTP
An assortment of functions and templates customized to meet the needs of data analysts at the non-profit organization TNTP. Includes functions for branded colors and plots, credentials management, repository set-up, and other common analytic tasks.
Maintained by Dustin Pashouwer. Last updated 4 months ago.
1.8 match 7 stars 5.83 score 13 scripts
cran
metaumbrella:Umbrella Review Package for R
A comprehensive range of facilities to perform umbrella reviews with stratification of the evidence in R. The package accomplishes this aim by building on three core functions that: (i) automatically perform all required calculations in an umbrella review (including but not limited to meta-analyses), (ii) stratify evidence according to various classification criteria, and (iii) generate a visual representation of the results. Note that if you are not familiar with R, the core features of this package are available from a web browser (<https://www.metaumbrella.org/>).
Maintained by Corentin J Gosling. Last updated 16 days ago.
2.3 match 9 stars 4.56 score
usaid-oha-si
tameDP:Import targets and PLHIV data from COP Target Setting Tool (formerly Data Pack)
Import PSNUxIM targets and PLHIV data from COP Data Pack. The purpose is to make the data tidy and more usable than their current structure in the Excel data packs.
Maintained by Aaron Chafetz. Last updated 1 years ago.
1.9 match 1 stars 4.92 score 46 scripts
kwb-r
kwb.db:Functions supporting data base access
This package contains some useful functions, especially for simplifying data transfer between MS Access databases and R. With the functions of this package it is not needed any more to open and close a database connection explicitely; this is done 'behind the scenes' in the functions. Instead of a database connection the path to the database file needs to be passed to the functions as an argument. The main functions are hsGetTable and hsPutTable which transfer data from an MS Access database to a data frame in R and save data from a data frame in R into a table in an MS Access database, respectively. Take care when getting time series data from an MS Access database, see therefore hsMdbTimeSeries. Use hsTables to get a list of tables that are available in a database and hsFields to get a list of table fields that are contained in a database table.
Maintained by Hauke Sonnenberg. Last updated 1 years ago.
data-importdatabase-accessdatabase-connectionrodbc
2.3 match 3.52 score 5 scripts 22 dependentsbioc
gep2pep:Creation and Analysis of Pathway Expression Profiles (PEPs)
Pathway Expression Profiles (PEPs) are based on the expression of pathways (defined as sets of genes) as opposed to individual genes. This package converts gene expression profiles to PEPs and performs enrichment analysis of both pathways and experimental conditions, such as "drug set enrichment analysis" and "gene2drug" drug discovery analysis respectively.
Maintained by Francesco Napolitano. Last updated 5 months ago.
geneexpressiondifferentialexpressiongenesetenrichmentdimensionreductionpathwaysgo
1.8 match 4.48 score 4 scripts
p-chevallier
htsr:Hydro-Meteorology Time-Series
Functions for the management and treatment of hydrology and meteorology time-series stored in a 'Sqlite' data base.
Maintained by Pierre Chevallier. Last updated 7 months ago.
1.7 match 4.60 score 2 scriptsbioc
MACSQuantifyR:Fast treatment of MACSQuantify FACS data
Automatically process the metadata of MACSQuantify FACS sorter. It runs multiple modules: i) imports of raw file and graphical selection of duplicates in well plate, ii) computes statistics on data and iii) can compute combination index.
Maintained by Raphaël Bonnet. Last updated 5 months ago.
dataimportpreprocessingnormalizationflowcytometrydatarepresentationgui
1.7 match 4.48 score 3 scriptsbioc
codelink:Manipulation of Codelink microarray data
This package facilitates reading, preprocessing and manipulating Codelink microarray data. The raw data must be exported as text file using the Codelink software.
Maintained by Diego Diez. Last updated 5 months ago.
microarrayonechanneldataimportpreprocessing
1.7 match 4.20 score 5 scripts
swampthingpaul
NADA2:Data Analysis for Censored Environmental Data
Contains methods described by Dennis Helsel in his book "Statistics for Censored Environmental Data using Minitab and R" (2011) and courses and videos at <https://practicalstats.com>. This package adds new functions to the `NADA` Package.
Maintained by Paul Julian. Last updated 6 months ago.
1.2 match 15 stars 6.16 score 16 scripts
richelbilderbeek
netmhc2pan:Interface to 'NetMHCIIpan'
The field of immunology benefits from software that can predict which peptide sequences trigger an immune response. 'NetMHCIIpan' is a such a tool: it predicts the binding strength of a short peptide to a Major Histocompatibility Complex class II (MHC-II) molecule. 'NetMHCIIpan' can be used from a web server at <https://services.healthtech.dtu.dk/services/NetMHCIIpan-3.2/> or from the command-line, using a local installation. This package allows to call 'NetMHCIIpan' from R.
Maintained by Richèl J.C. Bilderbeek. Last updated 8 months ago.
1.9 match 1 stars 3.70 score 8 scripts
a2-ai
scicalc:Scientific Calculations for Quantitative Clinical Pharmacology and Pharmacometrics Analysis
Utility functions helpful for reproducible scientific calculations.
Maintained by Matthew Smith. Last updated 1 months ago.
1.7 match 1 stars 4.04 score 4 scripts
tsukubai
hclusteasy:Determining Hierarchical Clustering Easily
Facilitates hierarchical clustering analysis with functions to read data in 'txt', 'xlsx', and 'xls' formats, apply normalization techniques to the dataset, perform hierarchical clustering and construct scatter plot from principal component analysis to evaluate the groups obtained.
Maintained by Henrique Andrade. Last updated 9 months ago.
2.3 match 3.00 score 1 scripts
stefanomp
massiveGST:Competitive Gene Sets Test with the Mann-Whitney-Wilcoxon Test
Friendly implementation of the Mann-Whitney-Wilcoxon test for competitive gene set enrichment analysis.
Maintained by Stefano Maria Pagnotta. Last updated 2 years ago.
1.8 match 2 stars 3.60 score 20 scripts
petrbouchal
vsezved:Get data on Czech schools from <https://stistko.uiv.cz/registr/> and <https://data.msmt.cz/>
Get access to data on Czech schools: the register open data provided by the Ministry of Education at <https://data.msmt.cz/> and non-open web database at <http://stistko.uiv.cz/registr/> This is mostly organisatoinal data on primary and secondary schools.
Maintained by Petr Bouchal. Last updated 8 months ago.
3.6 match 1 stars 1.70 score
nacnudus
tidyxl:Read Untidy Excel Files
Imports non-tabular from Excel files into R. Exposes cell content, position and formatting in a tidy structure for further manipulation. Tokenizes Excel formulas. Supports '.xlsx' and '.xlsm' via the embedded 'RapidXML' C++ library <https://rapidxml.sourceforge.net>. Does not support '.xlsb' or '.xls'.
Maintained by Duncan Garmonsway. Last updated 1 years ago.
excelreaderrcppspreadsheettidycpp
0.5 match 251 stars 10.69 score 382 scripts 13 dependents
quanteda
readtext:Import and Handling for Plain and Formatted Text Files
Functions for importing and handling text files and formatted text files with additional meta-data, such including '.csv', '.tab', '.json', '.xml', '.html', '.pdf', '.doc', '.docx', '.rtf', '.xls', '.xlsx', and others.
Maintained by Kenneth Benoit. Last updated 4 months ago.
0.5 match 122 stars 10.66 score 1.2k scripts 5 dependents
epicentre-msf
qxl:Quick Customized Excel Files
A wrapper to the openxlsx package optimized for writing flat data structures.
Maintained by Patrick Barks. Last updated 12 months ago.
1.9 match 5 stars 2.88 score 7 scripts
r-forge
tframePlus:Time Frame Coding Kernel Extensions
Extensions and additional 'tframe' utilities.
Maintained by Paul Gilbert. Last updated 1 years ago.
1.8 match 3.00 score 9 scripts
jpmonteagudo28
matriz:Literature Matrix Synthesis Tools for Epidemiology and Health Science Research
An easy-to-use workflow that provides tools to create, update and fill literature matrices commonly used in research, specifically epidemiology and health sciences research. The project is born out of need as an easy–to–use tool for my research methods classes.
Maintained by JP Monteagudo. Last updated 1 months ago.
epidemiologyhealthliterature-reviewresearchscience
1.6 match 3.18 scorekwb-r
kwb.geosalz:R Package for Documenting Workflow Used in Project "geosalz"
R Package for Documenting Workflow Used in Project "geosalz".
Maintained by Michael Rustler. Last updated 12 months ago.
data-cleaningdata-importdata-visualisationexcelproject-fakinproject-geosalzspreadsheets
2.0 match 2.30 score 3 scripts
kirchkamp
zTree:Functions to Import Data from 'z-Tree' into R
Read '.xls' and '.sbj' files which are written by the Microsoft Windows program 'z-Tree'. The latter is a software for developing and carrying out economic experiments (see <http://www.ztree.uzh.ch/> for more information).
Maintained by Oliver Kirchkamp. Last updated 3 years ago.
2.2 match 1 stars 2.00 score 10 scripts
jaggh
climatol:Climate Tools (Series Homogenization and Derived Products)
Functions for the quality control, homogenization and missing data filling of climatological series and to obtain climatological summaries and grids from the results. Also functions to display wind-roses, meteograms, Walter&Lieth diagrams, and more.
Maintained by Jose A. Guijarro. Last updated 12 months ago.
1.7 match 2 stars 2.16 score 67 scriptscran
scbursts:Single Channel Bursts Analysis
Provides tools to import and export from several existing pieces of ion-channel analysis software such as 'TAC', 'QUB', 'SCAN', and 'Clampfit', implements procedures such as dwell-time correction and defining bursts with a critical time, and provides tools for analysis of bursts, such as tools for sorting and plotting.
Maintained by Blair Drummond. Last updated 6 years ago.
1.2 match 2.00 score
xfz329
pk4adi:PK for Anesthetic Depth Indicators
Calculate and compare the Anesthetic Depth Indicators PK values in R language The prediction probability (PK) is a widely used tool for the anesthetic depth indicators, which was first proposed by Dr. Warren D. Smith in the paper Warren D. Smith; Robert C. Dutton; Ty N. Smith (1996) <doi:10.1097/00000542-199601000-00005> and Warren D. Smith; Robert C. Dutton; Ty N. Smith (1996) <doi:10.1002/(SICI)1097-0258(19960615)15:11<1199::AID-SIM218>3.0.CO;2-Y>. They provide the Micro xls files to calculate and compare the PK values. This package provide the easy-to-use API to calculate and compare the PK values using the R language. The package's name, pk4adi, is short for "PK for Anesthetic Depth Indicators".
Maintained by Feng Jiang. Last updated 2 years ago.
0.5 match 2 stars 3.00 score
srivenkatesh7
DataLoader:Import Multiple File Types
Functions to import multiple files of multiple data file types ('.xlsx', '.xls', '.csv', '.txt') from a given directory into R data frames.
Maintained by Srivenkatesh Gandhi. Last updated 9 years ago.
0.5 match 1.00 score 2 scripts