R-universe search: plume

Showing 9 of total 9 results (show query)

arnaudgallou

plume:A Simple Author Handler for Scientific Writing

Handles and formats author information in scientific writing in 'R Markdown' and 'Quarto'. 'plume' provides easy-to-use and flexible tools for injecting author metadata in 'YAML' headers as well as generating author and contribution lists (among others) as strings from tabular data.

Maintained by Arnaud Gallou. Last updated 1 months ago.

authors contribution contributions list lists markdown paper preprint quarto role roles

75.7 match 21 stars 6.80 score 15 scripts

spiwokv

metadynminer:Tools to Read, Analyze and Visualize Metadynamics HILLS Files from 'Plumed'

Metadynamics is a state of the art biomolecular simulation technique. 'Plumed' Tribello, G.A. et al. (2014) <doi:10.1016/j.cpc.2013.09.018> program makes it possible to perform metadynamics using various simulation codes. The results of metadynamics done in 'Plumed' can be analyzed by 'metadynminer'. The package 'metadynminer' reads 1D and 2D metadynamics hills files from 'Plumed' package. It uses a fast algorithm by Hosek, P. and Spiwok, V. (2016) <doi:10.1016/j.cpc.2015.08.037> to calculate a free energy surface from hills. Minima can be located and plotted on the free energy surface. Transition states can be analyzed by Nudged Elastic Band method by Henkelman, G. and Jonsson, H. (2000) <doi:10.1063/1.1323224>. Free energy surfaces, minima and transition paths can be plotted to produce publication quality images.

Maintained by Vojtech Spiwok. Last updated 1 years ago.

cpp

11.5 match 33 stars 5.35 score 45 scripts 1 dependents

waynegitshell

GWSDAT:GroundWater Spatiotemporal Data Analysis Tool (GWSDAT)

Shiny application for the analysis of groundwater monitoring data, designed to work with simple time-series data for solute concentration and ground water elevation, but can also plot non-aqueous phase liquid (NAPL) thickness if required. Also provides the import of a site basemap in GIS shapefile format.

Maintained by Wayne Jones. Last updated 1 years ago.

contamination-detection groundwater-flow plume shiny spatio-temporal-analysis

11.0 match 32 stars 5.02 score 11 scripts

spiwokv

metadynminer3d:Tools to Read, Analyze and Visualize Metadynamics 3D HILLS Files from 'Plumed'

Metadynamics is a state of the art biomolecular simulation technique. 'Plumed' Tribello, G.A. et al. (2014) <doi:10.1016/j.cpc.2013.09.018> program makes it possible to perform metadynamics using various simulation codes. The results of metadynamics done in 'Plumed' can be analyzed by 'metadynminer'. The package 'metadynminer' reads 1D and 2D metadynamics hills files from 'Plumed' package. As an addendum, 'metadynaminer3d' is used to visualize 3D hills. It uses a fast algorithm by Hosek, P. and Spiwok, V. (2016) <doi:10.1016/j.cpc.2015.08.037> to calculate a free energy surface from hills. Minima can be located and plotted on the free energy surface. Free energy surfaces and minima can be plotted to produce publication quality images.

Maintained by Vojtech Spiwok. Last updated 3 years ago.

cpp

7.3 match 1.95 score 18 scripts

atmoschem

EmissV:Tools for Create Emissions for Air Quality Models

Processing tools to create emissions for use in numerical air quality models. Emissions can be calculated both using emission factors and activity data (Schuch et al 2018) <doi:10.21105/joss.00662> or using pollutant inventories (Schuch et al., 2018) <doi:10.30564/jasr.v1i1.347>. Functions to process individual point emissions, line emissions and area emissions of pollutants are available as well as methods to incorporate alternative data for Spatial distribution of emissions such as satellite images (Gavidia-Calderon et. al, 2018) <doi:10.1016/j.atmosenv.2018.09.026> or openstreetmap data (Andrade et al, 2015) <doi:10.3389/fenvs.2015.00009>.

Maintained by Daniel Schuch. Last updated 19 days ago.

atmos atmospheric-chemistry atmospheric-modelling atmospheric-models atmospheric-science emissions wrf-chem

1.9 match 41 stars 5.50 score 13 scripts

ecofire

firebehavioR:Prediction of Wildland Fire Behavior and Hazard

Fire behavior prediction models, including the Scott & Reinhardt's (2001) Rothermel Wildland Fire Modelling System <DOI:10.2737/RMRS-RP-29> and Alexander et al.'s (2006) Crown Fire Initiation & Spread model <DOI:10.1016/j.foreco.2006.08.174>. Also contains sample datasets, estimation of fire behavior prediction model inputs (e.g., fuel moisture, canopy characteristics, wind adjustment factor), results visualization, and methods to estimate fire weather hazard.

Maintained by Justin Ziegler. Last updated 6 years ago.

2.9 match 3 stars 3.26 score 12 scripts

geomarker-io

appc:Air Pollution Predictor Commons

Functions for geomarker assessment for s2 locations and dates. These are used to train and predict daily ambient air pollution concentrations across the contiguous US 2016 - 2022.

Maintained by Cole Brokamp. Last updated 2 months ago.

1.7 match 2.54 score 6 scripts

cran

s2dv:A Set of Common Tools for Seasonal to Decadal Verification

The advanced version of package 's2dverification'. It is intended for 'seasonal to decadal' (s2d) climate forecast verification, but it can also be used in other kinds of forecasts or general climate analysis. This package is specially designed for the comparison between the experimental and observational datasets. The functionality of the included functions covers from data retrieval, data post-processing, skill scores against observation, to visualization. Compared to 's2dverification', 's2dv' is more compatible with the package 'startR', able to use multiple cores for computation and handle multi-dimensional arrays with a higher flexibility. The CDO version used in development is 1.9.8.

Maintained by Ariadna Batalla. Last updated 5 months ago.

1.8 match 1.95 score 3 dependents

alexjcwitsil

imagefx:Extract Features from Images

Synthesize images into characteristic features for time-series analysis or machine learning applications. The package was originally intended for monitoring volcanic eruptions in video data by highlighting and extracting regions above the vent associated with plume activity. However, the functions within are general and have wide applications for image processing, analyzing, filtering, and plotting.

Maintained by Alex J.C. Witsil. Last updated 5 years ago.

0.5 match 2.34 score 11 scripts