Showing 8 of total 8 results (show query)
msberends
AMR:Antimicrobial Resistance Data Analysis
Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in <doi:10.18637/jss.v104.i03>.
Maintained by Matthijs S. Berends. Last updated 12 hours ago.
amrantimicrobial-dataepidemiologymicrobiologysoftware
21.7 match 92 stars 11.87 score 182 scripts 6 dependents
otoliths
SP2000:Catalogue of Life Toolkit
A programmatic interface to <http://sp2000.org.cn>, re-written based on an accompanying 'Species 2000' API. Access tables describing catalogue of the Chinese known species of animals, plants, fungi, micro-organisms, and more. This package also supports access to catalogue of life global <http://catalogueoflife.org>, China animal scientific database <http://zoology.especies.cn> and catalogue of life Taiwan <https://taibnet.sinica.edu.tw/home_eng.php>. The development of 'SP2000' package were supported by Biodiversity Survey and Assessment Project of the Ministry of Ecology and Environment, China <2019HJ2096001006>,Yunnan University's "Double First Class" Project <C176240405> and Yunnan University's Research Innovation Fund for Graduate Students <2019227>.
Maintained by Liuyong Ding. Last updated 1 years ago.
animalsbiodiversitycatalogue-of-life-chinacatalogue-of-life-global-checklistcatalogue-of-life-taiwan-checklistchinachina-animal-scientific-databasefungimicroorganismsplantsredlist-of-chinese-biodiversityspecies2000
10.0 match 13 stars 3.81 score 3 scripts
agroscope-ch
srppp:Read the Swiss Register of Plant Protection Products
Generate data objects from XML versions of the Swiss Register of Plant Protection Products. An online version of the register can be accessed at <https://www.psm.admin.ch/de/produkte>. There is no guarantee of correspondence of the data read in using this package with that online version, or with the original registration documents. Also, the Federal Food Safety and Veterinary Office, coordinating the authorisation of plant protection products in Switzerland, does not answer requests regarding this package.
Maintained by Johannes Ranke. Last updated 25 days ago.
5.4 match 6.31 score 20 scripts 1 dependents
vinhtantran
monoClust:Perform Monothetic Clustering with Extensions to Circular Data
Implementation of the Monothetic Clustering algorithm (Chavent, 1998 <doi:10.1016/S0167-8655(98)00087-7>) on continuous data sets. A lot of extensions are included in the package, including applying Monothetic clustering on data sets with circular variables, visualizations with the results, and permutation and cross-validation based tests to support the decision on the number of clusters.
Maintained by Tan Tran. Last updated 4 years ago.
circular-variablesclustersggplot2monotheticplotvisualization
7.5 match 1 stars 4.18 score 7 scripts 1 dependents
cran
drc:Analysis of Dose-Response Curves
Analysis of dose-response data is made available through a suite of flexible and versatile model fitting and after-fitting functions.
Maintained by Christian Ritz. Last updated 9 years ago.
3.6 match 8 stars 8.39 score 1.4k scripts 28 dependents
certe-medical-epidemiology
certetoolbox:A Certe R Package for Miscellaneous Functions
A Certe R Package for miscellaneous functions that do not fit a dedicated package. This package also mitigates the 'vctrs' package by allowing numeric-character coercions. This package is part of the 'certedata' universe.
Maintained by Erwin E. A. Hassing. Last updated 8 days ago.
2.0 match 3.43 score 1 scripts 1 dependents
luomus
finbif:Interface for the 'Finnish Biodiversity Information Facility' API
A programmatic interface to the 'Finnish Biodiversity Information Facility' ('FinBIF') API (<https://api.laji.fi>). 'FinBIF' aggregates Finnish biodiversity data from multiple sources in a single open access portal for researchers, citizen scientists, industry and government. 'FinBIF' allows users of biodiversity information to find, access, combine and visualise data on Finnish plants, animals and microorganisms. The 'finbif' package makes the publicly available data in 'FinBIF' easily accessible to programmers. Biodiversity information is available on taxonomy and taxon occurrence. Occurrence data can be filtered by taxon, time, location and other variables. The data accessed are conveniently preformatted for subsequent analyses.
Maintained by William K. Morris. Last updated 7 days ago.
apibiodiversitybiodiversity-informaticsbiodiversity-informationfinbiffinbif-accessoccurrencesr-programmingspeciesspecimenstaxontaxonomyweb-services
0.5 match 5 stars 8.15 score 42 scripts 3 dependentscran
CoreMicrobiomeR:Identification of Core Microbiome
The Core Microbiome refers to the group of microorganisms that are consistently present in a particular environment, habitat, or host species. These microorganisms play a crucial role in the functioning and stability of that ecosystem. Identifying these microorganisms can contribute to the emerging field of personalized medicine. The 'CoreMicrobiomeR' is designed to facilitate the identification, statistical testing, and visualization of this group of microorganisms.This package offers three key functions to analyze and visualize microbial community data. This package has been developed based on the research papers published by Pereira et al.(2018) <doi:10.1186/s12864-018-4637-6> and Beule L, Karlovsky P. (2020) <doi:10.7717/peerj.9593>.
Maintained by Mohammad Samir Farooqi. Last updated 12 months ago.
1.0 match 1.00 score