Showing 21 of total 21 results (show query)
tidyverse
dplyr:A Grammar of Data Manipulation
A fast, consistent tool for working with data frame like objects, both in memory and out of memory.
Maintained by Hadley Wickham. Last updated 25 days ago.
4.8k stars 24.68 score 659k scripts 7.8k dependents
sparklyr
sparklyr:R Interface to Apache Spark
R interface to Apache Spark, a fast and general engine for big data processing, see <https://spark.apache.org/>. This package supports connecting to local and remote Apache Spark clusters, provides a 'dplyr' compatible back-end, and provides an interface to Spark's built-in machine learning algorithms.
Maintained by Edgar Ruiz. Last updated 11 days ago.
apache-sparkdistributeddplyridelivymachine-learningremote-clusterssparksparklyr
959 stars 15.20 score 4.0k scripts 21 dependents
cynkra
dm:Relational Data Models
Provides tools for working with multiple related tables, stored as data frames or in a relational database. Multiple tables (data and metadata) are stored in a compound object, which can then be manipulated with a pipe-friendly syntax.
Maintained by Kirill Müller. Last updated 3 months ago.
data-modeldata-warehousingdatawarehousingdbidbplyrrelational-databases
511 stars 14.81 score 410 scripts 8 dependents
thomasp85
tidygraph:A Tidy API for Graph Manipulation
A graph, while not "tidy" in itself, can be thought of as two tidy data frames describing node and edge data respectively. 'tidygraph' provides an approach to manipulate these two virtual data frames using the API defined in the 'dplyr' package, as well as provides tidy interfaces to a lot of common graph algorithms.
Maintained by Thomas Lin Pedersen. Last updated 2 months ago.
graph-algorithmsgraph-manipulationigraphnetwork-analysistidyversecpp
553 stars 14.74 score 4.6k scripts 136 dependents
dieghernan
tidyterra:'tidyverse' Methods and 'ggplot2' Helpers for 'terra' Objects
Extension of the 'tidyverse' for 'SpatRaster' and 'SpatVector' objects of the 'terra' package. It includes also new 'geom_' functions that provide a convenient way of visualizing 'terra' objects with 'ggplot2'.
Maintained by Diego Hernangómez. Last updated 4 days ago.
terraggplot-extensionr-spatialrspatial
190 stars 13.59 score 1.9k scripts 25 dependents
billdenney
PKNCA:Perform Pharmacokinetic Non-Compartmental Analysis
Compute standard Non-Compartmental Analysis (NCA) parameters for typical pharmacokinetic analyses and summarize them.
Maintained by Bill Denney. Last updated 29 days ago.
ncanoncompartmental-analysispharmacokinetics
73 stars 12.61 score 214 scripts 4 dependents
bioc
mia:Microbiome analysis
mia implements tools for microbiome analysis based on the SummarizedExperiment, SingleCellExperiment and TreeSummarizedExperiment infrastructure. Data wrangling and analysis in the context of taxonomic data is the main scope. Additional functions for common task are implemented such as community indices calculation and summarization.
Maintained by Tuomas Borman. Last updated 15 days ago.
microbiomesoftwaredataimportanalysisbioconductor
52 stars 11.50 score 316 scripts 5 dependents
markfairbanks
tidytable:Tidy Interface to 'data.table'
A tidy interface to 'data.table', giving users the speed of 'data.table' while using tidyverse-like syntax.
Maintained by Mark Fairbanks. Last updated 2 months ago.
460 stars 11.39 score 732 scripts 11 dependents
nathaneastwood
poorman:A Poor Man's Dependency Free Recreation of 'dplyr'
A replication of key functionality from 'dplyr' and the wider 'tidyverse' using only 'base'.
Maintained by Nathan Eastwood. Last updated 1 years ago.
base-rdata-manipulationgrammar
342 stars 10.79 score 156 scripts 27 dependents
elbersb
tidylog:Logging for 'dplyr' and 'tidyr' Functions
Provides feedback about 'dplyr' and 'tidyr' operations.
Maintained by Benjamin Elbers. Last updated 10 months ago.
dplyrtidyrtidyversewrapper-functions
593 stars 10.23 score 1.7k scriptsbioc
tidybulk:Brings transcriptomics to the tidyverse
This is a collection of utility functions that allow to perform exploration of and calculations to RNA sequencing data, in a modular, pipe-friendly and tidy fashion.
Maintained by Stefano Mangiola. Last updated 11 days ago.
assaydomaininfrastructurernaseqdifferentialexpressiongeneexpressionnormalizationclusteringqualitycontrolsequencingtranscriptiontranscriptomicsbioconductorbulk-transcriptional-analysesdeseq2differential-expressionedgerensembl-idsentrezgene-symbolsgseamds-dimensionspcapiperedundancytibbletidytidy-datatidyversetranscriptstsne
171 stars 9.57 score 172 scripts 1 dependents
adibender
pammtools:Piece-Wise Exponential Additive Mixed Modeling Tools for Survival Analysis
The Piece-wise exponential (Additive Mixed) Model (PAMM; Bender and others (2018) <doi: 10.1177/1471082X17748083>) is a powerful model class for the analysis of survival (or time-to-event) data, based on Generalized Additive (Mixed) Models (GA(M)Ms). It offers intuitive specification and robust estimation of complex survival models with stratified baseline hazards, random effects, time-varying effects, time-dependent covariates and cumulative effects (Bender and others (2019)), as well as support for left-truncated data as well as competing risks, recurrent events and multi-state settings. pammtools provides tidy workflow for survival analysis with PAMMs, including data simulation, transformation and other functions for data preprocessing and model post-processing as well as visualization.
Maintained by Andreas Bender. Last updated 5 days ago.
additive-modelspammpammtoolspiece-wise-exponentialsurvival-analysis
48 stars 9.32 score 310 scripts 8 dependents
somalogic
SomaDataIO:Input/Output 'SomaScan' Data
Load and export 'SomaScan' data via the 'Standard BioTools, Inc.' structured text file called an ADAT ('*.adat'). For file format see <https://github.com/SomaLogic/SomaLogic-Data/blob/main/README.md>. The package also exports auxiliary functions for manipulating, wrangling, and extracting relevant information from an ADAT object once in memory.
Maintained by Caleb Scheidel. Last updated 2 months ago.
adatproteomicsproteomics-data-analysissomascan
26 stars 7.71 score 132 scripts
statisfactions
simpr:Flexible 'Tidyverse'-Friendly Simulations
A general, 'tidyverse'-friendly framework for simulation studies, design analysis, and power analysis. Specify data generation, define varying parameters, generate data, fit models, and tidy model results in a single pipeline, without needing loops or custom functions.
Maintained by Ethan Brown. Last updated 9 months ago.
43 stars 6.89 score 30 scripts
randrescastaneda
joyn:Tool for Diagnosis of Tables Joins and Complementary Join Features
Tool for diagnosing table joins. It combines the speed of `collapse` and `data.table`, the flexibility of `dplyr`, and the diagnosis and features of the `merge` command in `Stata`.
Maintained by R.Andres Castaneda. Last updated 3 months ago.
9 stars 6.83 score 31 scripts
mattheaphy
actxps:Create Actuarial Experience Studies: Prepare Data, Summarize Results, and Create Reports
Experience studies are used by actuaries to explore historical experience across blocks of business and to inform assumption setting activities. This package provides functions for preparing data, creating studies, visualizing results, and beginning assumption development. Experience study methods, including exposure calculations, are described in: Atkinson & McGarry (2016) "Experience Study Calculations" <https://www.soa.org/49378a/globalassets/assets/files/research/experience-study-calculations.pdf>. The limited fluctuation credibility method used by the 'exp_stats()' function is described in: Herzog (1999, ISBN:1-56698-374-6) "Introduction to Credibility Theory".
Maintained by Matt Heaphy. Last updated 3 months ago.
14 stars 6.38 score 23 scripts
hope-data-science
tidyft:Fast and Memory Efficient Data Operations in Tidy Syntax
Tidy syntax for 'data.table', using modification by reference whenever possible. This toolkit is designed for big data analysis in high-performance desktop or laptop computers. The syntax of the package is similar or identical to 'tidyverse'. It is user friendly, memory efficient and time saving. For more information, check its ancestor package 'tidyfst'.
Maintained by Tian-Yuan Huang. Last updated 6 months ago.
35 stars 6.25 score 34 scripts
asardaes
table.express:Build 'data.table' Expressions with Data Manipulation Verbs
A specialization of 'dplyr' data manipulation verbs that parse and build expressions which are ultimately evaluated by 'data.table', letting it handle all optimizations. A set of additional verbs is also provided to facilitate some common operations on a subset of the data.
Maintained by Alexis Sarda-Espinosa. Last updated 2 years ago.
65 stars 5.81 score 8 scripts
pv71u98h1
m61r:Package About Data Manipulation in Pure Base R
Data manipulation in one package and in base R. Minimal. No dependencies. 'dplyr' and 'tidyr'-like in one place. Nothing else than base R to build the package.
Maintained by Jean-Marie Lepioufle. Last updated 5 months ago.
1 stars 4.00 score 5 scripts
poissonconsulting
mcmcdata:Manipulate MCMC Samples and Data Frames
Manipulates Monte Carlo Markov Chain samples and associated data frames.
Maintained by Joe Thorley. Last updated 2 months ago.
1 stars 3.56 score 4 scripts 4 dependents
r-forge
pems.utils:Portable Emissions (and Other Mobile) Measurement System Utilities
Utility functions for the handling, analysis and visualisation of data from portable emissions measurement systems ('PEMS') and other similar mobile activity monitoring devices. The package includes a dedicated 'pems' data class that manages many of the quality control, unit handling and data archiving issues that can hinder efforts to standardise 'PEMS' research.
Maintained by Karl Ropkins. Last updated 3 months ago.
3.06 score 19 scripts