Showing 3 of total 3 results (show query)
somalogic
SomaDataIO:Input/Output 'SomaScan' Data
Load and export 'SomaScan' data via the 'Standard BioTools, Inc.' structured text file called an ADAT ('*.adat'). For file format see <https://github.com/SomaLogic/SomaLogic-Data/blob/main/README.md>. The package also exports auxiliary functions for manipulating, wrangling, and extracting relevant information from an ADAT object once in memory.
Maintained by Caleb Scheidel. Last updated 1 months ago.
adatproteomicsproteomics-data-analysissomascan
16.5 match 26 stars 7.71 score 132 scripts
jinghuazhao
pQTLdata:A Collection of Proteome Panels and Metadata
It aggregates protein panel data and metadata for protein quantitative trait locus (pQTL) analysis using 'pQTLtools' (<https://jinghuazhao.github.io/pQTLtools/>). The package includes data from affinity-based panels such as 'Olink' (<https://olink.com/>) and 'SomaScan' (<https://somalogic.com/>), as well as mass spectrometry-based panels from 'CellCarta' (<https://cellcarta.com/>), 'Seer' (<https://seer.bio/>) and 'SWATH-MS' (<doi:10.15252/msb.20178126>). The metadata encompasses updated annotations and publication details.
Maintained by Jing Hua Zhao. Last updated 1 days ago.
9.2 match 2 stars 5.15 score
bioc
autonomics:Unified Statistical Modeling of Omics Data
This package unifies access to Statistal Modeling of Omics Data. Across linear modeling engines (lm, lme, lmer, limma, and wilcoxon). Across coding systems (treatment, difference, deviation, etc). Across model formulae (with/without intercept, random effect, interaction or nesting). Across omics platforms (microarray, rnaseq, msproteomics, affinity proteomics, metabolomics). Across projection methods (pca, pls, sma, lda, spls, opls). Across clustering methods (hclust, pam, cmeans). It provides a fast enrichment analysis implementation. And an intuitive contrastogram visualisation to summarize contrast effects in complex designs.
Maintained by Aditya Bhagwat. Last updated 2 months ago.
softwaredataimportpreprocessingdimensionreductionprincipalcomponentregressiondifferentialexpressiongenesetenrichmenttranscriptomicstranscriptiongeneexpressionrnaseqmicroarrayproteomicsmetabolomicsmassspectrometry
4.2 match 5.95 score 5 scripts