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herveabdi
DistatisR:DiSTATIS Three Way Metric Multidimensional Scaling
Implement DiSTATIS and CovSTATIS (three-way multidimensional scaling). DiSTATIS and CovSTATIS are used to analyze multiple distance/covariance matrices collected on the same set of observations. These methods are based on Abdi, H., Williams, L.J., Valentin, D., & Bennani-Dosse, M. (2012) <doi:10.1002/wics.198>.
Maintained by Herve Abdi. Last updated 1 years ago.
3-way-mdsdistatismetric-multidimensional-scaling
43.5 match 4 stars 4.42 score 44 scripts
damiendevienne
phylter:Detect and Remove Outliers in Phylogenomics Datasets
Analyzis and filtering of phylogenomics datasets. It takes an input either a collection of gene trees (then transformed to matrices) or directly a collection of gene matrices and performs an iterative process to identify what species in what genes are outliers, and whose elimination significantly improves the concordance between the input matrices. The methods builds upon the Distatis approach (Abdi et al. (2005) <doi:10.1101/2021.09.08.459421>), a generalization of classical multidimensional scaling to multiple distance matrices.
Maintained by Aurélie Siberchicot. Last updated 12 days ago.
phylogenetic-treesphylogeneticsphylogenomicscpp
4.0 match 9 stars 5.91 score 6 scripts