Showing 5 of total 5 results (show query)
epiverse-trace
linelist:Tagging and Validating Epidemiological Data
Provides tools to help storing and handling case line list data. The 'linelist' class adds a tagging system to classical 'data.frame' objects to identify key epidemiological data such as dates of symptom onset, epidemiological case definition, age, gender or disease outcome. Once tagged, these variables can be seamlessly used in downstream analyses, making data pipelines more robust and reliable.
Maintained by Hugo Gruson. Last updated 4 days ago.
datadata-structuresepidemiologyepiverseoutbreakssdg-3structured-data
7 stars 8.69 score 61 scripts 2 dependentsepiverse-trace
cfr:Estimate Disease Severity and Case Ascertainment
Estimate the severity of a disease and ascertainment of cases, as discussed in Nishiura et al. (2009) <doi:10.1371/journal.pone.0006852>.
Maintained by Adam Kucharski. Last updated 1 months ago.
case-fatality-rateepidemic-modellingepidemiologyepiversehealth-outcomesoutbreak-analysissdg-3
14 stars 8.11 score 35 scriptsepiverse-trace
finalsize:Calculate the Final Size of an Epidemic
Calculate the final size of a susceptible-infectious-recovered epidemic in a population with demographic variation in contact patterns and susceptibility to disease, as discussed in Miller (2012) <doi:10.1007/s11538-012-9749-6>.
Maintained by Rosalind Eggo. Last updated 2 months ago.
epidemic-modellingepidemiologyepiverseoutbreak-analysisrcppsdg-3cpp
11 stars 8.11 score 46 scriptsepiverse-trace
epiCo:Statistical and Viz Tools for Vector-Borne Diseases in Colombia
Provides statistical and visualization tools for the analysis of demographic indicators, and spatio-temporal behavior and characterization of outbreaks of vector-borne diseases (VBDs) in Colombia. It implements travel times estimated in Bravo-Vega C., Santos-Vega M., & Cordovez J.M. (2022), and the endemic channel method (Bortman, M. (1999) <https://iris.paho.org/handle/10665.2/8562>).
Maintained by Juan D. Umaña. Last updated 3 months ago.
colombiadecision-supportdemographicsepiverseoutbreak-analysissdg-3spatio-temporal-analysisvector-borne-diseases
12 stars 6.94 score 8 scripts
jameel-institute
daedalus:Model Health, Social, and Economic Costs of a Pandemic
Model the health, education, and economic costs of directly transmitted respiratory virus pandemics, under different scenarios of prior vaccine investment and reactive interventions, using the 'DAEDALUS' integrated health-economics model adapted from Haw et al. (2022) <doi.org/10.1038/s43588-022-00233-0>.
Maintained by Pratik Gupte. Last updated 2 days ago.
decision-supportepidemiological-modelshealth-economicspandemic-preparednesspublic-healthrcppsdg-3cppopenmp
4 stars 5.95 score 8 scripts