Showing 27 of total 27 results (show query)
epiverse-trace
sivirep:Data Wrangling and Automated Reports from 'SIVIGILA' Source
Data wrangling, pre-processing, and generating automated reports from Colombia's epidemiological surveillance system, 'SIVIGILA' <https://portalsivigila.ins.gov.co/>. It provides a customizable R Markdown template for analysis and automatic generation of epidemiological reports that can be adapted to local, regional, and national contexts. This tool offers a standardized and reproducible workflow that helps to reduce manual labor and potential errors in report generation, improving their efficiency and consistency.
Maintained by Geraldine Gómez-Millán. Last updated 18 days ago.
colombiaepidemiological-surveillanceepiversepublic-health
18.6 match 43 stars 8.04 score 21 scriptsepiverse-trace
epiCo:Statistical and Viz Tools for Vector-Borne Diseases in Colombia
Provides statistical and visualization tools for the analysis of demographic indicators, and spatio-temporal behavior and characterization of outbreaks of vector-borne diseases (VBDs) in Colombia. It implements travel times estimated in Bravo-Vega C., Santos-Vega M., & Cordovez J.M. (2022), and the endemic channel method (Bortman, M. (1999) <https://iris.paho.org/handle/10665.2/8562>).
Maintained by Juan D. Umaña. Last updated 2 months ago.
colombiadecision-supportdemographicsepiverseoutbreak-analysissdg-3spatio-temporal-analysisvector-borne-diseases
19.1 match 12 stars 6.94 score 8 scripts
lightbluetitan
ColombiAPI:Access Colombia's Public Data via API-Colombia
ColombiAPI provides a seamless interface to access diverse public data about Colombia through the API Colombia, a RESTful API. The package enables users to explore various aspects of Colombia, including general information, geography, and cultural insights. It includes five API-related functions to retrieve data on topics such as Colombia's general information, airports, departments, regions, and presidents. Additionally, ColombiAPI offers a built-in function to view the datasets available within the package. The package also includes curated datasets covering Bogota air stations, business and holiday dates, public schools, Colombian coffee exports, cannabis licenses, Medellin rainfall, and malls in Bogota, making it a comprehensive tool for exploring Colombia's data.
Maintained by Renzo Caceres Rossi. Last updated 2 months ago.
24.3 match 5 stars 4.40 score
katilingban
ppitables:Lookup Tables to Generate Poverty Likelihoods and Rates using the Poverty Probability Index (PPI)
The Poverty Probability Index (PPI) is a poverty measurement tool for organizations and businesses with a mission to serve the poor. The PPI is statistically-sound, yet simple to use: the answers to 10 questions about a household's characteristics and asset ownership are scored to compute the likelihood that the household is living below the poverty line - or above by only a narrow margin. This package contains country-specific lookup data tables used as reference to determine the poverty likelihood of a household based on their score from the country-specific PPI questionnaire. These lookup tables have been extracted from documentation of the PPI found at <https://www.povertyindex.org> and managed by Innovations for Poverty Action <https://poverty-action.org/>.
Maintained by Ernest Guevarra. Last updated 3 days ago.
datapovertypoverty-likelihoodspoverty-probabilityppi
13.5 match 6 stars 6.43 score 89 scriptsepiverse-trace
ColOpenData:Download Colombian Demographic, Climate and Geospatial Data
Downloads wrangled Colombian socioeconomic, geospatial,population and climate data from DANE <https://www.dane.gov.co/> (National Administrative Department of Statistics) and IDEAM <https://ideam.gov.co> (Institute of Hydrology, Meteorology and Environmental Studies). It solves the problem of Colombian data being issued in different web pages and sources by using functions that allow the user to select the desired database and download it without having to do the exhausting acquisition process.
Maintained by Maria Camila Tavera-Cifuentes. Last updated 1 months ago.
climatecolombiadata-packagedemographicsmaps
11.0 match 11 stars 7.44 score 17 scripts
beanumber
tidychangepoint:A Tidy Framework for Changepoint Detection Analysis
Changepoint detection algorithms for R are widespread but have different interfaces and reporting conventions. This makes the comparative analysis of results difficult. We solve this problem by providing a tidy, unified interface for several different changepoint detection algorithms. We also provide consistent numerical and graphical reporting leveraging the 'broom' and 'ggplot2' packages.
Maintained by Benjamin S. Baumer. Last updated 1 months ago.
9.8 match 2 stars 5.30 score 8 scripts
epiforecasts
covidregionaldata:Subnational Data for COVID-19 Epidemiology
An interface to subnational and national level COVID-19 data sourced from both official sources, such as Public Health England in the UK, and from other COVID-19 data collections, including the World Health Organisation (WHO), European Centre for Disease Prevention and Control (ECDC), John Hopkins University (JHU), Google Open Data and others. Designed to streamline COVID-19 data extraction, cleaning, and processing from a range of data sources in an open and transparent way. This allows users to inspect and scrutinise the data, and tools used to process it, at every step. For all countries supported, data includes a daily time-series of cases. Wherever available data is also provided for deaths, hospitalisations, and tests. National level data are also supported using a range of sources.
Maintained by Sam Abbott. Last updated 3 years ago.
covid-19dataopen-sciencer6regional-data
8.8 match 37 stars 5.67 score 121 scripts
reconverse
outbreaks:A Collection of Disease Outbreak Data
Empirical or simulated disease outbreak data, provided either as RData or as text files.
Maintained by Finlay Campbell. Last updated 2 years ago.
7.3 match 51 stars 6.70 score 282 scripts
covid19datahub
COVID19:COVID-19 Data Hub
Unified datasets for a better understanding of COVID-19.
Maintained by Emanuele Guidotti. Last updated 28 days ago.
2019-ncovcoronaviruscovid-19covid-datacovid19-data
3.3 match 252 stars 11.08 score 265 scripts
carloscinelli
sensemakr:Sensitivity Analysis Tools for Regression Models
Implements a suite of sensitivity analysis tools that extends the traditional omitted variable bias framework and makes it easier to understand the impact of omitted variables in regression models, as discussed in Cinelli, C. and Hazlett, C. (2020), "Making Sense of Sensitivity: Extending Omitted Variable Bias." Journal of the Royal Statistical Society, Series B (Statistical Methodology) <doi:10.1111/rssb.12348>.
Maintained by Carlos Cinelli. Last updated 4 months ago.
3.5 match 92 stars 9.43 score 139 scripts 2 dependents
cysouw
qlcMatrix:Utility Sparse Matrix Functions for Quantitative Language Comparison
Extension of the functionality of the 'Matrix' package for using sparse matrices. Some of the functions are very general, while other are highly specific for special data format as used for quantitative language comparison.
Maintained by Michael Cysouw. Last updated 9 months ago.
3.4 match 6 stars 6.98 score 256 scripts 1 dependents
d-score
childdevdata:Child Development Data
Measuring child development starts by collecting responses to developmental milestones, such as "able to sit" or "says two words". There are many ways to combine such responses into summaries. The package bundles publicly available datasets with individual milestone data for children aged 0-5 years, with the aim of supporting the construction, evaluation, validation and interpretation of methodologies that aggregate milestone data into informative measures of child development.
Maintained by Stef van Buuren. Last updated 2 years ago.
child-developmentd-scoredataset
6.8 match 3 stars 3.18 score 8 scripts
oswaldogressani
EpiLPS:A Fast and Flexible Bayesian Tool for Estimating Epidemiological Parameters
Estimation of epidemiological parameters with Laplacian-P-splines following the methodology of Gressani et al. (2022) <doi:10.1371/journal.pcbi.1010618>.
Maintained by Oswaldo Gressani. Last updated 5 months ago.
3.5 match 19 stars 4.69 score 17 scripts
amsantac
geospt:Geostatistical Analysis and Design of Optimal Spatial Sampling Networks
Estimation of the variogram through trimmed mean, radial basis functions (optimization, prediction and cross-validation), summary statistics from cross-validation, pocket plot, and design of optimal sampling networks through sequential and simultaneous points methods.
Maintained by Ali Santacruz. Last updated 6 days ago.
3.4 match 4 stars 4.56 score 30 scripts 1 dependents
grantmcdermott
ritest:Randomisation Inference Testing
An experimental port of the `ritest` Stata routine by Simon Heß. Fast and user-friendly. Aims to support a variety of model classes once it is fully baked.
Maintained by . Last updated 3 years ago.
3.5 match 10 stars 3.70 score 7 scripts
adrincont
BMTAR:Bayesian Approach for MTAR Models with Missing Data
Implements parameter estimation using a Bayesian approach for Multivariate Threshold Autoregressive (MTAR) models with missing data using Markov Chain Monte Carlo methods. Performs the simulation of MTAR processes (mtarsim()), estimation of matrix parameters and the threshold values (mtarns()), identification of the autoregressive orders using Bayesian variable selection (mtarstr()), identification of the number of regimes using Metropolised Carlin and Chib (mtarnumreg()) and estimate missing data, coefficients and covariance matrices conditional on the autoregressive orders, the threshold values and the number of regimes (mtarmissing()). Calderon and Nieto (2017) <doi:10.1080/03610926.2014.990758>.
Maintained by Andrey Duvan Rincon Torres. Last updated 3 years ago.
4.0 match 1 stars 2.70 score 2 scripts
cepardot
FactoClass:Combination of Factorial Methods and Cluster Analysis
Some functions of 'ade4' and 'stats' are combined in order to obtain a partition of the rows of a data table, with columns representing variables of scales: quantitative, qualitative or frequency. First, a principal axes method is performed and then, a combination of Ward agglomerative hierarchical classification and K-means is performed, using some of the first coordinates obtained from the previous principal axes method. In order to permit different weights of the elements to be clustered, the function 'kmeansW', programmed in C++, is included. It is a modification of 'kmeans'. Some graphical functions include the option: 'gg=FALSE'. When 'gg=TRUE', they use the 'ggplot2' and 'ggrepel' packages to avoid the super-position of the labels.
Maintained by Campo Elias Pardo. Last updated 1 years ago.
3.8 match 2.22 score 163 scripts
coreofscience
tosr:Create the Tree of Science from WoS and Scopus
The goal of 'tosr' is to create the Tree of Science from Web of Science (WoS) and Scopus data. It can read files from both sources at the same time. More information can be found in Valencia-Hernández (2020) <https://revistas.unal.edu.co/index.php/ingeinv/article/view/77718>.
Maintained by Sebastian Robledo. Last updated 1 years ago.
1.5 match 8 stars 5.23 score 21 scripts
cran
RGE:Response from Genotype to Environment
Compute yield-stability index based on Bayesian methodology, which is useful for analyze multi-environment trials in plant breeding programs. References: Cotes Torres JM, Gonzalez Jaimes EP, and Cotes Torres A (2016) <https://revistas.unimilitar.edu.co/index.php/rfcb/article/view/2037> Seleccion de Genotipos con Alta Respuesta y Estabilidad Fenotipica en Pruebas Regionales: Recuperando el Concepto Biologico.
Maintained by Jose Miguel Cotes Torres. Last updated 3 years ago.
5.4 match 1.30 score 6 scripts
fdzul
dendata:the dendata package provides the dengue spatial databases (areal data) available and published in scientific journals
the dendata package provides the dengue spatial databases (areal data) available and published in scientific journals.
Maintained by The package maintainer. Last updated 8 months ago.
3.5 match 1.70 score 1 scripts
lhvanegasp
mtarm:Bayesian Estimation of Multivariate Threshold Autoregressive Models
Estimation, inference and forecasting using the Bayesian approach for multivariate threshold autoregressive (TAR) models in which the distribution used to describe the noise process belongs to the class of Gaussian variance mixtures.
Maintained by Luis Hernando Vanegas. Last updated 8 months ago.
3.6 match 1.48 score 1 scripts
kjhealy
gssrdoc:Document General Social Survey Variable
The General Social Survey (GSS) is a long-running, mostly annual survey of US households. It is administered by the National Opinion Research Center (NORC). This package contains the a tibble with information on the survey variables, together with every variable documented as an R help page. For more information on the GSS see \url{http://gss.norc.org}.
Maintained by Kieran Healy. Last updated 11 months ago.
1.8 match 2.28 score 38 scripts
paulesantos
mtsta:A Package for Accessing the Red List of Montane Tree Species of the Tropical Andes
The `mtsta` package provides functions to access the Red List of Montane Tree Species of the Tropical Andes. This package allows users to search for globally threatened tree species within the Andean montane forests, including cloud forests and seasonal (wet) forests above 1500 m a.s.l. It uses the Levenshtein distance to perform approximate matching and allows specifying the maximum distance for matching. The package is part of a project to facilitate the assess the conservation status of the world's montane tree species in the tropical Andes region of Argentina, Bolivia, Colombia, Ecuador, Peru, and Venezuela.
Maintained by Paul Efren Santos Andrade. Last updated 11 months ago.
0.5 match 3.70 score 4 scriptscoreofscience
margaret:Scientometric Analysis Minciencias
The target of 'margaret' is help to extract data from Minciencias to analyze scientific production in Colombia.
Maintained by Bryan Arias. Last updated 2 years ago.
0.6 match 3 stars 3.18 score 4 scripts