Showing 13 of total 13 results (show query)
cbielow
PTXQC:Quality Report Generation for MaxQuant and mzTab Results
Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool). Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format. Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) <doi:10.1021/acs.jproteome.5b00780>.
Maintained by Chris Bielow. Last updated 1 years ago.
drag-and-drophacktoberfestheatmapmatch-between-runsmaxquantmetricmztabopenmsproteomicsquality-controlquality-metricsreport
42 stars 9.35 score 105 scripts 1 dependents
emilopezcano
SixSigma:Six Sigma Tools for Quality Control and Improvement
Functions and utilities to perform Statistical Analyses in the Six Sigma way. Through the DMAIC cycle (Define, Measure, Analyze, Improve, Control), you can manage several Quality Management studies: Gage R&R, Capability Analysis, Control Charts, Loss Function Analysis, etc. Data frames used in the books "Six Sigma with R" [ISBN 978-1-4614-3652-2] and "Quality Control with R" [ISBN 978-3-319-24046-6], are also included in the package.
Maintained by Emilio L. Cano. Last updated 2 years ago.
quality-controlquality-improvementsix-sigmaspc
15 stars 7.82 score 169 scripts 1 dependents
kenithgrey
ggQC:Quality Control Charts for 'ggplot'
Plot single and faceted type quality control charts for 'ggplot'.
Maintained by Kenith Grey. Last updated 6 years ago.
46 stars 6.74 score 119 scripts
bioc
SpotSweeper:Spatially-aware quality control for spatial transcriptomics
Spatially-aware quality control (QC) software for both spot-level and artifact-level QC in spot-based spatial transcripomics, such as 10x Visium. These methods calculate local (nearest-neighbors) mean and variance of standard QC metrics (library size, unique genes, and mitochondrial percentage) to identify outliers spot and large technical artifacts.
Maintained by Michael Totty. Last updated 3 months ago.
softwarespatialtranscriptomicsqualitycontrolgeneexpressionbioconductorquality-controlspatial-transcriptomics
5 stars 6.66 score 77 scripts
ms-quality-hub
rmzqc:Creation, Reading and Validation of 'mzqc' Files
Reads, writes and validates 'mzQC' files. The 'mzQC' format is a standardized file format for the exchange, transmission, and archiving of quality metrics derived from biological mass spectrometry data, as defined by the HUPO-PSI (Human Proteome Organisation - Proteomics Standards Initiative) Quality Control working group. See <https://hupo-psi.github.io/mzQC/> for details.
Maintained by Chris Bielow. Last updated 3 days ago.
hacktoberfestmass-spectrometrymzqcquality-control
3 stars 6.21 score 10 scripts 3 dependents
johnmackintosh
runcharter:Automatically Plot, Analyse and Revises Limits of Multiple Run Charts
Plots multiple run charts, finds successive signals of improvement, and revises medians when each signal occurs. Finds runs above, below, or on both sides of the median, and returns a plot and a data.table summarising original medians and any revisions, for all groups within the supplied data.
Maintained by John MacKintosh. Last updated 3 years ago.
chart-analysishealthcarenhsnhs-r-communityquality-controlquality-improvementquality-improvement-effortsrdatatable
38 stars 6.11 score 17 scripts
europeanifcbgroup
iRfcb:Tools for Managing Imaging FlowCytobot (IFCB) Data
A comprehensive suite of tools for managing, processing, and analyzing data from the IFCB. I R FlowCytobot ('iRfcb') supports quality control, geospatial analysis, and preparation of IFCB data for publication in databases like <https://www.gbif.org>, <https://www.obis.org>, <https://emodnet.ec.europa.eu/en>, <https://shark.smhi.se/>, and <https://www.ecotaxa.org>. The package integrates with the MATLAB 'ifcb-analysis' tool, which is described in Sosik and Olson (2007) <doi:10.4319/lom.2007.5.204>, and provides features for working with raw, manually classified, and machine learning–classified image datasets. Key functionalities include image extraction, particle size distribution analysis, taxonomic data handling, and biomass concentration calculations, essential for plankton research.
Maintained by Anders Torstensson. Last updated 4 days ago.
data-exportimaging-flow-cytometryimaging-flowcytobotoceanographyplanktonquality-control
1 stars 5.76 score
mcanouil
NACHO:NanoString Quality Control Dashboard
NanoString nCounter data are gene expression assays where there is no need for the use of enzymes or amplification protocols and work with fluorescent barcodes (Geiss et al. (2018) <doi:10.1038/nbt1385>). Each barcode is assigned a messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its target can be counted. As a result each count of a specific barcode represents the presence of its target mRNA/miRNA. 'NACHO' (NAnoString quality Control dasHbOard) is able to analyse the exported NanoString nCounter data and facilitates the user in performing a quality control. 'NACHO' does this by visualising quality control metrics, expression of control genes, principal components and sample specific size factors in an interactive web application.
Maintained by Mickaël Canouil. Last updated 1 years ago.
mirnamrnananostringnormalisationquality-controlshiny
8 stars 5.41 score 32 scripts
moseleybioinformaticslab
visualizationQualityControl:Development of visualization methods for quality control
Provides utilities useful quality control of high-throughput -omics datasets.
Maintained by Robert M Flight. Last updated 1 years ago.
bioinformaticscorrelationquality-controlvisualization
10 stars 4.78 score 30 scripts
flaviobarros
IQCC:Improved Quality Control Charts
Builds statistical control charts with exact limits for univariate and multivariate cases.
Maintained by Flavio Barros. Last updated 6 years ago.
2 stars 3.92 score 28 scripts 1 dependents
ctu-bern
kpitools:Tools for creating key performance indicator reports for clinical trial
Assessing performance of clinical trials can assist identify problems earlier in the trial than might be possible without it and help to improve trial quality. Tools for the creating performance indicator reports are however uncommon. 'kpitools' aims to provide tools to create such reports.
Maintained by Alan G. Haynes. Last updated 8 months ago.
key-performance-indicatorkpiquality-control
2 stars 3.90 score 8 scripts
yonghuidong
RawHummus:Raw Data Quality Control Tool for LC-MS System
Assess LC–MS system performance by visualizing instrument log files and monitoring raw quality control samples within a project.
Maintained by Yonghui Dong. Last updated 2 years ago.
lcmsmetabolomicsorbitrapquality-control
5 stars 3.40 score 2 scriptsjohnmackintosh
spccharter:Automatically Plot, Analyse and Revise Multiple Process Control Charts
Plots multiple control charts, finds signals of improvement, and revises centre line and control limits each time a signal is present.
Maintained by John MacKintosh. Last updated 2 years ago.
healthcarenhsnhsr-communityquality-controlquality-improvementquality-improvement-effortsrdatatablestatistical-process-control
27 stars 3.13 score 2 scripts