Showing 28 of total 28 results (show query)
larmarange
labelled:Manipulating Labelled Data
Work with labelled data imported from 'SPSS' or 'Stata' with 'haven' or 'foreign'. This package provides useful functions to deal with "haven_labelled" and "haven_labelled_spss" classes introduced by 'haven' package.
Maintained by Joseph Larmarange. Last updated 1 months ago.
havenlabelsmetadatasasspssstata
76 stars 15.04 score 2.4k scripts 98 dependents
ropensci
rotl:Interface to the 'Open Tree of Life' API
An interface to the 'Open Tree of Life' API to retrieve phylogenetic trees, information about studies used to assemble the synthetic tree, and utilities to match taxonomic names to 'Open Tree identifiers'. The 'Open Tree of Life' aims at assembling a comprehensive phylogenetic tree for all named species.
Maintained by Francois Michonneau. Last updated 2 years ago.
metadataropensciphylogeneticsindependant-contrastsbiodiversitypeer-reviewedphylogenytaxonomy
40 stars 12.05 score 356 scripts 29 dependentsropensci
rcrossref:Client for Various 'CrossRef' 'APIs'
Client for various 'CrossRef' 'APIs', including 'metadata' search with their old and newer search 'APIs', get 'citations' in various formats (including 'bibtex', 'citeproc-json', 'rdf-xml', etc.), convert 'DOIs' to 'PMIDs', and 'vice versa', get citations for 'DOIs', and get links to full text of articles when available.
Maintained by Najko Jahn. Last updated 2 years ago.
text-mingliteraturepdfxmlpublicationscitationsfull-texttdmcrossrefapiapi-wrappercrossref-apidoimetadata
171 stars 10.15 score 404 scripts 10 dependentsropensci
RNeXML:Semantically Rich I/O for the 'NeXML' Format
Provides access to phyloinformatic data in 'NeXML' format. The package should add new functionality to R such as the possibility to manipulate 'NeXML' objects in more various and refined way and compatibility with 'ape' objects.
Maintained by Carl Boettiger. Last updated 11 months ago.
metadatanexmlphylogeneticslinked-data
13 stars 9.97 score 100 scripts 19 dependentsropensci
cffr:Generate Citation File Format ('cff') Metadata for R Packages
The Citation File Format version 1.2.0 <doi:10.5281/zenodo.5171937> is a human and machine readable file format which provides citation metadata for software. This package provides core utilities to generate and validate this metadata.
Maintained by Diego Hernangómez. Last updated 6 days ago.
attributioncitationcreditcitation-filescffmetadatacitation-file-formatropensci
25 stars 9.69 score 116 scripts 3 dependents
merck
metalite.ae:Adverse Events Analysis Using 'metalite'
Analyzes adverse events in clinical trials using the 'metalite' data structure. The package simplifies the workflow to create production-ready tables, listings, and figures discussed in the adverse events analysis chapters of "R for Clinical Study Reports and Submission" by Zhang et al. (2022) <https://r4csr.org/>.
Maintained by Yujie Zhao. Last updated 2 months ago.
18 stars 9.45 score 31 scripts 2 dependentsropensci
codemetar:Generate 'CodeMeta' Metadata for R Packages
The 'Codemeta' Project defines a 'JSON-LD' format for describing software metadata, as detailed at <https://codemeta.github.io>. This package provides utilities to generate, parse, and modify 'codemeta.json' files automatically for R packages, as well as tools and examples for working with 'codemeta.json' 'JSON-LD' more generally.
Maintained by Carl Boettiger. Last updated 2 months ago.
metadatacodemetaropenscicitationcreditlinked-datajson-ldpeer-reviewed
68 stars 8.90 score 34 scripts 6 dependentsmerck
metalite:ADaM Metadata Structure
A metadata structure for clinical data analysis and reporting based on Analysis Data Model (ADaM) datasets. The package simplifies clinical analysis and reporting tool development by defining standardized inputs, outputs, and workflow. The package can be used to create analysis and reporting planning grid, mock table, and validated analysis and reporting results based on consistent inputs.
Maintained by Yujie Zhao. Last updated 7 months ago.
15 stars 8.89 score 57 scripts 5 dependents
rubenarslan
codebook:Automatic Codebooks from Metadata Encoded in Dataset Attributes
Easily automate the following tasks to describe data frames: Summarise the distributions, and labelled missings of variables graphically and using descriptive statistics. For surveys, compute and summarise reliabilities (internal consistencies, retest, multilevel) for psychological scales. Combine this information with metadata (such as item labels and labelled values) that is derived from R attributes. To do so, the package relies on 'rmarkdown' partials, so you can generate HTML, PDF, and Word documents. Codebooks are also available as tables (CSV, Excel, etc.) and in JSON-LD, so that search engines can find your data and index the metadata. The metadata are also available at your fingertips via RStudio Addins.
Maintained by Ruben Arslan. Last updated 3 months ago.
codebookdocumentationformrjson-ldmetadataspsswebapp
143 stars 8.29 score 229 scripts
nceas
metajam:Easily Download Data and Metadata from 'DataONE'
A set of tools to foster the development of reproducible analytical workflow by simplifying the download of data and metadata from 'DataONE' (<https://www.dataone.org>) and easily importing this information into R.
Maintained by Julien Brun. Last updated 7 months ago.
datadata-analysismetadatarepositories
16 stars 8.21 score 75 scripts
eblondel
geometa:Tools for Reading and Writing ISO/OGC Geographic Metadata
Provides facilities to read, write and validate geographic metadata defined with ISO TC211 / OGC ISO geographic information metadata standards, and encoded using the ISO 19139 and ISO 19115-3 (XML) standard technical specifications. This includes ISO 19110 (Feature cataloguing), 19115 (dataset metadata), 19119 (service metadata) and 19136 (GML). Other interoperable schemas from the OGC are progressively supported as well, such as the Sensor Web Enablement (SWE) Common Data Model, the OGC GML Coverage Implementation Schema (GMLCOV), or the OGC GML Referenceable Grid (GMLRGRID).
Maintained by Emmanuel Blondel. Last updated 5 days ago.
geometagmlinspireisoiso19110iso19115iso19119iso19136iso19139metadatametadata-validationogcspatialxml
47 stars 8.16 score 109 scripts 7 dependents
bioc
BiocPkgTools:Collection of simple tools for learning about Bioconductor Packages
Bioconductor has a rich ecosystem of metadata around packages, usage, and build status. This package is a simple collection of functions to access that metadata from R. The goal is to expose metadata for data mining and value-added functionality such as package searching, text mining, and analytics on packages.
Maintained by Sean Davis. Last updated 25 days ago.
softwareinfrastructurebioconductormetadata
21 stars 7.67 score 68 scriptsropensci
dataspice:Create Lightweight Schema.org Descriptions of Data
The goal of 'dataspice' is to make it easier for researchers to create basic, lightweight, and concise metadata files for their datasets. These basic files can then be used to make useful information available during analysis, create a helpful dataset "README" webpage, and produce more complex metadata formats to aid dataset discovery. Metadata fields are based on the 'Schema.org' and 'Ecological Metadata Language' standards.
Maintained by Bryce Mecum. Last updated 4 years ago.
datadatasetmetadataschema-orgunconfunconf18
162 stars 7.45 score 25 scriptsropensci
natserv:'NatureServe' Interface
Interface to 'NatureServe' (<https://www.natureserve.org/>). Includes methods to get data, image metadata, search taxonomic names, and make maps.
Maintained by Christopher Tracey. Last updated 2 months ago.
taxonomyspeciesapiweb-servicesnatureservemetadatamapstaxize
11 stars 7.06 score 18 scripts 24 dependents
r-world-devs
GitStats:Standardized Git Repository Data
Obtain standardized data from multiple 'Git' services, including 'GitHub' and 'GitLab'. Designed to be 'Git' service-agnostic, this package assists teams with activities spread across various 'Git' platforms by providing a unified way to access repository data.
Maintained by Maciej Banas. Last updated 2 months ago.
4 stars 6.51 score 10 scripts 1 dependents
poissonconsulting
readwritesqlite:Enhanced Reading and Writing for 'SQLite' Databases
Reads and writes data frames to 'SQLite' databases while preserving time zones (for POSIXct columns), projections (for 'sfc' columns), units (for 'units' columns), levels (for factors and ordered factors) and classes for logical, Date and 'hms' columns. It also logs changes to tables and provides more informative error messages.
Maintained by Joe Thorley. Last updated 2 months ago.
dbilogmetadataposixctreadsfcsqliteunitswrite
38 stars 6.42 score 11 scripts 1 dependents
cboettig
codemeta:A Smaller 'codemetar' Package
The 'Codemeta' Project defines a 'JSON-LD' format for describing software metadata, as detailed at <https://codemeta.github.io>. This package provides core utilities to generate this metadata with a minimum of dependencies.
Maintained by Carl Boettiger. Last updated 1 years ago.
metadatacodemetaropenscicitationcreditlinked-data
8 stars 6.04 score 9 scripts 7 dependentsropensci
mapmetadata:Map health metadata onto predefined research domains
Prior to gaining full access to health datasets, explore publicly available metadata and map metadata onto predefined research domains. This package uses structural metadata files downloaded from the Health Data Research Gateway (https://healthdatagateway.org/en). In theory, any metadata file with the same structure as the files downloaded from this gateway can be used with this package, but the package has been developed and tested on metadata files from this gateway only.
Maintained by Rachael Stickland. Last updated 22 days ago.
hdrukhdruk-gatewayhealth-datametadatasail-databank
6 stars 5.86 score
pepkit
pepr:Reading Portable Encapsulated Projects
A PEP, or Portable Encapsulated Project, is a dataset that subscribes to the PEP structure for organizing metadata. It is written using a simple YAML + CSV format, it is your one-stop solution to metadata management across data analysis environments. This package reads this standardized project configuration structure into R. Described in Sheffield et al. (2021) <doi:10.1093/gigascience/giab077>.
Maintained by Nathan Sheffield. Last updated 1 years ago.
3 stars 5.62 score 20 scripts
edonnachie
ICD10gm:Metadata Processing for the German Modification of the ICD-10 Coding System
Provides convenient access to the German modification of the International Classification of Diagnoses, 10th revision (ICD-10-GM). It provides functionality to aid in the identification, specification and historisation of ICD-10 codes. Its intended use is the analysis of routinely collected data in the context of epidemiology, medical research and health services research. The underlying metadata are released by the German Institute for Medical Documentation and Information <https://www.dimdi.de>, and are redistributed in accordance with their license.
Maintained by Ewan Donnachie. Last updated 2 years ago.
bfarmcharlsoncomorbiditiesdiagnosesdimdiicd-10metadataroutinedatenversorgungsforschung
10 stars 5.30 score 20 scriptsropensci
handlr:Convert Among Citation Formats
Converts among many citation formats, including 'BibTeX', 'Citeproc', 'Codemeta', 'RDF XML', 'RIS', 'Schema.org', and 'Citation File Format'. A low level 'R6' class is provided, as well as stand-alone functions for each citation format for both read and write.
Maintained by Brenton M. Wiernik. Last updated 25 days ago.
doimetadatacitationbibtexcrossrefcrosscitecodemetarisciteprocrdfxmljsoncitationsdigital-object-identifier
38 stars 5.22 score 29 scriptsropensci
rdatacite:Client for the 'DataCite' API
Client for the web service methods provided by 'DataCite' (<https://www.datacite.org/>), including functions to interface with their 'RESTful' search API. The API is backed by 'Elasticsearch', allowing expressive queries, including faceting.
Maintained by Bianca Kramer. Last updated 2 years ago.
datascholarlydatasethttpsapiweb-servicesapi-wrapperdataciteidentifiermetadataoai-pmhsolr
25 stars 4.99 score 26 scripts
neptune-ai
neptune:MLOps Metadata Store - Experiment Tracking and Model Registry for Production Teams
An interface to Neptune. A metadata store for MLOps, built for teams that run a lot of experiments. It gives you a single place to log, store, display, organize, compare, and query all your model-building metadata. Neptune is used for: • Experiment tracking: Log, display, organize, and compare ML experiments in a single place. • Model registry: Version, store, manage, and query trained models, and model building metadata. • Monitoring ML runs live: Record and monitor model training, evaluation, or production runs live For more information see <https://neptune.ai/>.
Maintained by Rafal Jankowski. Last updated 2 years ago.
comparelanguagelogmanagementmetadatametricsmlopsmodelsmonitoringorganizeparametersstoretrackervisualization
14 stars 4.83 score 16 scriptsropensci
citecorp:Client for the Open Citations Corpus
Client for the Open Citations Corpus (<http://opencitations.net/>). Includes a set of functions for getting one identifier type from another, as well as getting references and citations for a given identifier.
Maintained by David Selby. Last updated 2 months ago.
doimetadatacitationopencitationsbibtexcitationspmcidpmidsparql
11 stars 4.81 score 13 scriptseblondel
geonapi:'GeoNetwork' API R Interface
Provides an R interface to the 'GeoNetwork' API (<https://geonetwork-opensource.org/#api>) allowing to upload and publish metadata in a 'GeoNetwork' web-application and expose it to OGC CSW.
Maintained by Emmanuel Blondel. Last updated 4 days ago.
apigeonetworkinterfacemetadataspatial
7 stars 4.02 score 7 scripts
stephenturner
kgp:1000 Genomes Project Metadata
Metadata about populations and data about samples from the 1000 Genomes Project, including the 2,504 samples sequenced for the Phase 3 release and the expanded collection of 3,202 samples with 602 additional trios. The data is described in Auton et al. (2015) <doi:10.1038/nature15393> and Byrska-Bishop et al. (2022) <doi:10.1016/j.cell.2022.08.004>, and raw data is available at <http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/>. See Turner (2022) <doi:10.48550/arXiv.2210.00539> for more details.
Maintained by Stephen Turner. Last updated 2 years ago.
1000genomesbioinformaticsgeneticsgenomicsmetadatapopulation-geneticssequencing
20 stars 4.00 score 3 scripts
azure
AzureVMmetadata:Interface to Azure Virtual Machine Instance Metadata
A simple interface to the instance metadata for a virtual machine running in Microsoft's 'Azure' cloud. This provides information about the VM's configuration, such as its processors, memory, networking, storage, and so on. Part of the 'AzureR' family of packages.
Maintained by Hong Ooi. Last updated 2 years ago.
azure-sdk-razure-virtual-machineinstance-metadatametadata
2 stars 3.30 score
insileco
omdbr:Retrieve Movies Metadata from OMDb Database
This package retrieves movies metadata (title, actors, year, genres, etc.) using the OMDb API <http://www.omdbapi.com/> (an API key is required). Cover can also be downloaded from the YTS API <https://yts.mx/api> (no API key required).
Maintained by Nicolas Casajus. Last updated 1 years ago.
coverimdbmetadatamoviesomdb-apiyts-api
4 stars 2.30 score 2 scripts