Showing 6 of total 6 results (show query)
bioc
rawrr:Direct Access to Orbitrap Data and Beyond
This package wraps the functionality of the Thermo Fisher Scientic RawFileReader .NET 8.0 assembly. Within the R environment, spectra and chromatograms are represented by S3 objects. The package provides basic functions to download and install the required third-party libraries. The package is developed, tested, and used at the Functional Genomics Center Zurich, Switzerland.
Maintained by Christian Panse. Last updated 4 months ago.
massspectrometryproteomicsmetabolomicsinfrastructuresoftwarefastmass-spectrometrymultiplatformorbitrap-ms
56 stars 8.19 score 23 scripts 2 dependents
karoliskoncevicius
matrixTests:Fast Statistical Hypothesis Tests on Rows and Columns of Matrices
Functions to perform fast statistical hypothesis tests on rows/columns of matrices. The main goals are: 1) speed via vectorization, 2) output that is detailed and easy to use, 3) compatibility with tests implemented in R (like those available in the 'stats' package).
Maintained by Karolis Koncevičius. Last updated 1 years ago.
anovafasthypothesis-testingmatrixrowst-testwilcoxon-test
36 stars 7.61 score 272 scripts 9 dependents
jcrodriguez1989
rco:The R Code Optimizer
Automatically apply different strategies to optimize R code. 'rco' functions take R code as input, and returns R code as output.
Maintained by Juan Cruz Rodriguez. Last updated 5 months ago.
compilerfastgcchpcoptimizationoptimizer
82 stars 6.73 scorebioc
rawDiag:Brings Orbitrap Mass Spectrometry Data to Life; Fast and Colorful
Optimizing methods for liquid chromatography coupled to mass spectrometry (LC-MS) poses a nontrivial challenge. The rawDiag package facilitates rational method optimization by generating MS operator-tailored diagnostic plots of scan-level metadata. The package is designed for use on the R shell or as a Shiny application on the Orbitrap instrument PC.
Maintained by Christian Panse. Last updated 5 months ago.
massspectrometryproteomicsmetabolomicsinfrastructuresoftwareshinyappsfastmass-spectrometrymultiplatformorbitrapvisualization
36 stars 6.71 score 18 scripts
polkas
miceFast:Fast Imputations Using 'Rcpp' and 'Armadillo'
Fast imputations under the object-oriented programming paradigm. Moreover there are offered a few functions built to work with popular R packages such as 'data.table' or 'dplyr'. The biggest improvement in time performance could be achieve for a calculation where a grouping variable have to be used. A single evaluation of a quantitative model for the multiple imputations is another major enhancement. A new major improvement is one of the fastest predictive mean matching in the R world because of presorting and binary search.
Maintained by Maciej Nasinski. Last updated 2 months ago.
cppfastfast-imputationsgroupingimputationimputationsmatrixmromultiple-imputationrcpprcpparmadillovifweightingopenblascppopenmp
20 stars 5.94 score 29 scripts
cadam00
lightAUC:Fast AUC Computation
Fast calculation of Area Under Curve (AUC) metric of a Receiver Operating Characteristic (ROC) curve, using the algorithm of Fawcett (2006) <doi:10.1016/j.patrec.2005.10.010>. Therefore it is appropriate for large-scale AUC metric calculations.
Maintained by Christos Adam. Last updated 2 months ago.
aucefficiencyfastrcpprcppparallelspeedcpp
4.18 score