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januarharianto

respR:Import, Process, Analyse, and Calculate Rates from Respirometry Data

Provides a structural, reproducible workflow for the processing and analysis of respirometry data. It contains analytical functions and utilities for working with oxygen time-series to determine respiration or oxygen production rates, and to make it easier to report and share analyses. See Harianto et al. 2019 <doi:10.1111/2041-210X.13162>.

Maintained by Nicholas Carey. Last updated 10 months ago.

respirometryrstudio

70.1 match 12 stars 5.64 score 90 scripts

matthewabirk

respirometry:Tools for Conducting and Analyzing Respirometry Experiments

Provides tools to enable the researcher to more precisely conduct respirometry experiments. Strong emphasis is on aquatic respirometry. Tools focus on helping the researcher setup and conduct experiments. Functions for analysis of resulting respirometry data are also provided. This package provides tools for intermittent, flow-through, and closed respirometry techniques.

Maintained by Matthew A. Birk. Last updated 4 months ago.

60.0 match 2.61 score 68 scripts 1 dependents

cran

FishResp:Analytical Tool for Aquatic Respirometry

Calculates metabolic rate of fish and other aquatic organisms measured using an intermittent-flow respirometry approach. The tool is used to run a set of graphical QC tests of raw respirometry data, correct it for background respiration and chamber effect, filter and extract target values of absolute and mass-specific metabolic rate. Experimental design should include background respiration tests and measuring of one or more metabolic rate traits. The R package is ideally integrated with the pump controller 'PumpResp' and the DO meter 'SensResp' (open-source hardware by FishResp). Raw respirometry data can be also imported from 'AquaResp' (free software), 'AutoResp' ('LoligoSystems'), 'OxyView' ('PreSens'), 'Pyro Oxygen Logger' ('PyroScience') and 'Q-box Aqua' ('QubitSystems'). More information about the R package 'FishResp'is available in the publication by Morozov et al. (2019) <doi:10.1093/conphys/coz003>.

Maintained by Sergey Morozov. Last updated 4 months ago.

18.1 match 2 stars 2.48 score

tylermoulton

rMR:Importing Data from Loligo Systems Software, Calculating Metabolic Rates and Critical Tensions

Analysis of oxygen consumption data generated by Loligo (R) Systems respirometry equipment. The package includes a function for loading data output by Loligo's 'AutoResp' software (get.witrox.data()), functions for calculating metabolic rates over user-specified time intervals, extracting critical points from data using broken stick regressions based on Yeager and Ultsch (<DOI:10.1086/physzool.62.4.30157935>), and easy functions for converting between different units of barometric pressure.

Maintained by Tyler L. Moulton. Last updated 7 years ago.

6.0 match 3.38 score 200 scripts 1 dependents

roaldarbol

respirometr:An R toolbox for analysing respirometry data

An R toolbox for analysing respirometry data.

Maintained by Mikkel Roald-Arbøl. Last updated 2 months ago.

3.6 match 3.48 score 2 scripts

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