R-universe search: needs:tidyterra

malaria-atlas-project

malariaAtlas:An R Interface to Open-Access Malaria Data, Hosted by the 'Malaria Atlas Project'

A suite of tools to allow you to download all publicly available parasite rate survey points, mosquito occurrence points and raster surfaces from the 'Malaria Atlas Project' <https://malariaatlas.org/> servers as well as utility functions for plotting the downloaded data.

Maintained by Mauricio van den Berg. Last updated 9 months ago.

database malaria opendata raster

44 stars 9.10 score 118 scripts 3 dependents

fawda123

rStrava:Access the 'Strava' API

Functions to access data from the 'Strava v3 API' <https://developers.strava.com/>.

Maintained by Marcus W. Beck. Last updated 5 months ago.

156 stars 7.03 score 57 scripts

philipmostert

intSDM:Reproducible Integrated Species Distribution Models Across Norway using 'INLA'

Integration of disparate datasets is needed in order to make efficient use of all available data and thereby address the issues currently threatening biodiversity. Data integration is a powerful modeling framework which allows us to combine these datasets together into a single model, yet retain the strengths of each individual dataset. We therefore introduce the package, 'intSDM': an R package designed to help ecologists develop a reproducible workflow of integrated species distribution models, using data both provided from the user as well as data obtained freely online. An introduction to data integration methods is discussed in Issac, Jarzyna, Keil, Dambly, Boersch-Supan, Browning, Freeman, Golding, Guillera-Arroita, Henrys, Jarvis, Lahoz-Monfort, Pagel, Pescott, Schmucki, Simmonds and O’Hara (2020) <doi:10.1016/j.tree.2019.08.006>.

Maintained by Philip Mostert. Last updated 3 months ago.

5 stars 6.26 score 12 scripts

predictiveecology

LandR:Landscape Ecosystem Modelling in R

Utilities for 'LandR' suite of landscape simulation models. These models simulate forest vegetation dynamics based on LANDIS-II, and incorporate fire and insect disturbance, as well as other important ecological processes. Models are implemented as 'SpaDES' modules.

Maintained by Eliot J B McIntire. Last updated 3 days ago.

ecological-modelling landscape-ecosystem-modelling spades

17 stars 6.09 score 12 scripts 4 dependents

idem-lab

sdmtools:Utility tools for Species Distribution Modelling

What the package does (one paragraph).

Maintained by Gerry Ryan. Last updated 3 months ago.

9 stars 6.08 score 674 scripts

rimagination

ggmapcn:Customizable China Map Visualizations

ggmapcn is a ggplot2 extension package for visualizing China’s map with customizable projections and styling.

Maintained by Liang Ren. Last updated 4 months ago.

16 stars 5.81 score 4 scripts

mmukaigawara

geocausal:Causal Inference with Spatio-Temporal Data

Spatio-temporal causal inference based on point process data. You provide the raw data of locations and timings of treatment and outcome events, specify counterfactual scenarios, and the package estimates causal effects over specified spatial and temporal windows. See Papadogeorgou, et al. (2022) <doi:10.1111/rssb.12548> and Mukaigawara, et al. (2024) <doi:10.31219/osf.io/5kc6f>.

Maintained by Mitsuru Mukaigawara. Last updated 12 days ago.

45 stars 5.77 score

wa-department-of-agriculture

soils:Visualize and Report Soil Health Data

Collection of soil health data visualization and reporting tools, including a RStudio project template with everything you need to generate custom HTML and Microsoft Word reports for each participant in your soil health sampling project.

Maintained by Jadey N Ryan. Last updated 6 days ago.

10 stars 5.73 score 9 scripts

phuais

multilandr:Landscape Analysis at Multiple Spatial Scales

Provides a tidy workflow for landscape-scale analysis. 'multilandr' offers tools to generate landscapes at multiple spatial scales and compute landscape metrics, primarily using the 'landscapemetrics' package. It also features utility functions for plotting and analyzing multi-scale landscapes, exploring correlations between metrics, filtering landscapes based on specific conditions, generating landscape gradients for a given metric, and preparing datasets for further statistical analysis. Documentation about 'multilandr' is provided in an introductory vignette included in this package and in the paper by Huais (2024) <doi:10.1007/s10980-024-01930-z>; see citation("multilandr") for details.

Maintained by Pablo Yair Huais. Last updated 1 months ago.

9 stars 5.61 score 5 scripts

ropensci

fireexposuR:Compute and Visualize Wildfire Exposure

This package computes and visualizes wildfire exposure using the methods documented in a series of scientific publications.

Maintained by Air Forbes. Last updated 7 days ago.

5 stars 5.56 score 4 scripts

emf-creaf

medfateland:Mediterranean Landscape Simulation

Simulate forest hydrology, forest function and dynamics over landscapes [De Caceres et al. (2015) <doi:10.1016/j.agrformet.2015.06.012>]. Parallelization is allowed in several simulation functions and simulations may be conducted including spatial processes such as lateral water transfer and seed dispersal.

Maintained by Miquel De Cáceres. Last updated 6 days ago.

cpp

5 stars 5.46 score 41 scripts

idem-lab

traveltime:Calculate Travel Times Over Space

Calculate travel time over a friction surface from a specified set of locations.

Maintained by Gerry Ryan. Last updated 14 days ago.

time timetravel travel traveltime

9 stars 5.32 score 26 scripts

massbays-tech

MassWateR:Quality Control and Analysis of Massachusetts Water Quality Data

Methods for quality control and exploratory analysis of surface water quality data collected in Massachusetts, USA. Functions are developed to facilitate data formatting for the Water Quality Exchange Network <https://www.epa.gov/waterdata/water-quality-data-upload-wqx> and reporting of data quality objectives to state agencies. Quality control methods are from Massachusetts Department of Environmental Protection (2020) <https://www.mass.gov/orgs/massachusetts-department-of-environmental-protection>.

Maintained by Marcus Beck. Last updated 11 days ago.

13 stars 5.29 score 10 scripts

jcoliver

lifeR:Identify Sites for Your Bird List

A suite of tools to use the 'eBird' database (<https://ebird.org/home/>) and APIs to compare users' species lists to recent observations and create a report of the top sites to visit to see new species.

Maintained by Jeffrey Oliver. Last updated 2 months ago.

4 stars 4.78 score 6 scripts

ebvcube

ebvcube:Working with netCDF for Essential Biodiversity Variables

The concept of Essential Biodiversity Variables (EBV, <https://geobon.org/ebvs/what-are-ebvs/>) comes with a data structure based on the Network Common Data Form (netCDF). The 'ebvcube' 'R' package provides functionality to easily create, access and visualise this data. The EBV netCDFs can be downloaded from the EBV Data Portal: Christian Langer/ iDiv (2020) <https://portal.geobon.org/>.

Maintained by Luise Quoss. Last updated 27 days ago.

biodiversity-standards essential-biodiversity-variables netcdf4

5 stars 4.70 score

timcdlucas

disaggregation:Disaggregation Modelling

Fits disaggregation regression models using 'TMB' ('Template Model Builder'). When the response data are aggregated to polygon level but the predictor variables are at a higher resolution, these models can be useful. Regression models with spatial random fields. The package is described in detail in Nandi et al. (2023) <doi:10.18637/jss.v106.i11>.

Maintained by Tim Lucas. Last updated 5 months ago.

cpp

2 stars 4.60 score 9 scripts

predictiveecology

CBMutils:Utilities for modelling carbon based on CBM-CFS3

Implementation of several components of the Carbon Budget Model of the Canadian Forest Service (v3).

Maintained by Alex M Chubaty. Last updated 4 days ago.

4.54 score 3 scripts

predictiveecology

fireSenseUtils:Utilities for Working With the 'fireSense' Group of 'SpaDES' Modules

Utilities for working with the 'fireSense' group of 'SpaDES' modules.

Maintained by Eliot J B McIntire. Last updated 2 months ago.

1 stars 4.51 score 2 scripts

predictiveecology

scfmutils:Tools and Utilities for Working With the SCFM Wildfire Simulation Model

The original fire model is described by Cumming et al. (1998), and more accessibly in Armstrong and Cumming (2003). It has recently been implemented as a collection of 'SpaDES' modules by Cumming, McIntire, Eddy, and Chubaty, available from <https://github.com/PredictiveEcology/scfm>.

Maintained by Alex M Chubaty. Last updated 8 hours ago.

3.98 score

ropenspain

CatastRoEus:Interface to the 'INSPIRE' services of 'Catastro de Bizkaia', 'Catastro de Gipuzkua', 'Catastro de Araba'

Access public spatial data available under the 'INSPIRE' directive. Tools for downloading references, buildings and addresses of properties on Pais Vasco (Spain).

Maintained by Jimena Salinero. Last updated 7 months ago.

basquecountry catastro maps ropenspain spain

3.74 score 3 scripts

pakillo

rSDM:Species distribution and niche modelling in R

Functions for niche modelling and SDM.

Maintained by Francisco Rodriguez-Sanchez. Last updated 1 months ago.

7 stars 3.23 score 16 scripts

imares-group

glossa:User-Friendly 'shiny' App for Bayesian Species Distribution Models

A user-friendly 'shiny' application for Bayesian machine learning analysis of marine species distributions. GLOSSA (Global Species Spatiotemporal Analysis) uses Bayesian Additive Regression Trees (BART; Chipman, George, and McCulloch (2010) <doi:10.1214/09-AOAS285>) to model species distributions with intuitive workflows for data upload, processing, model fitting, and result visualization. It supports presence-absence and presence-only data (with pseudo-absence generation), spatial thinning, cross-validation, and scenario-based projections. GLOSSA is designed to facilitate ecological research by providing easy-to-use tools for analyzing and visualizing marine species distributions across different spatial and temporal scales.

Maintained by Jorge Mestre-Tomás. Last updated 4 months ago.

jags cpp

1 stars 3.00 score 5 scripts

predictiveecology