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MuData:Serialization for MultiAssayExperiment Objects
Save MultiAssayExperiments to h5mu files supported by muon and mudata. Muon is a Python framework for multimodal omics data analysis. It uses an HDF5-based format for data storage.
Maintained by Ilia Kats. Last updated 20 days ago.
dataimportanndatabioconductormudatamulti-omicsmultimodal-omicsscrna-seq
75.7 match 5 stars 5.89 score 26 scriptsbioc
scviR:experimental inferface from R to scvi-tools
This package defines interfaces from R to scvi-tools. A vignette works through the totalVI tutorial for analyzing CITE-seq data. Another vignette compares outputs of Chapter 12 of the OSCA book with analogous outputs based on totalVI quantifications. Future work will address other components of scvi-tools, with a focus on building understanding of probabilistic methods based on variational autoencoders.
Maintained by Vincent Carey. Last updated 5 months ago.
infrastructuresinglecelldataimportbioconductorcite-seqscverse
2.0 match 6 stars 5.60 score 11 scripts