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bioc
MGnifyR:R interface to EBI MGnify metagenomics resource
Utility package to facilitate integration and analysis of EBI MGnify data in R. The package can be used to import microbial data for instance into TreeSummarizedExperiment (TreeSE). In TreeSE format, the data is directly compatible with miaverse framework.
Maintained by Tuomas Borman. Last updated 6 days ago.
infrastructuredataimportmetagenomicsmicrobiomemicrobiomedata
11.0 match 21 stars 7.48 score 32 scriptsbioc
HoloFoodR:R interface to EBI HoloFood resource
Utility package to facilitate integration and analysis of EBI HoloFood data in R. This package streamlines access to the resource, allowing for direct loading of data into formats optimized for downstream analytics.
Maintained by Tuomas Borman. Last updated 1 months ago.
softwareinfrastructuredataimportmicrobiomemicrobiomedata
11.0 match 1 stars 4.70 score 6 scripts
waldronlab
MicrobiomeBenchmarkData:Datasets for benchmarking in microbiome research
The MicrobiomeBenchmarkData package provides functionality to access microbiome datasets suitable for benchmarking. These datasets have some biological truth, which allows to have expected results for comparison. The datasets come from various published sources and are provided as TreeSummarizedExperiment objects. Currently, only datasets suitable for benchmarking differential abundance methods are available.
Maintained by Samuel Gamboa. Last updated 5 months ago.
experimentdatamicrobiomedatareproducibleresearchsequencingdatabioconductor-packager01ca230551
11.0 match 4.39 score 18 scripts