Showing 60 of total 60 results (show query)
josedv82
matuR:Athlete Maturation and Biobanding
Identifying maturation stages across young athletes is paramount for talent identification. Furthermore, the concept of biobanding, or grouping of athletes based on their biological development, instead of their chronological age, has been widely researched. The goal of this package is to help professionals working in the field of strength & conditioning and talent ID obtain common maturation metrics and as well as to quickly visualize this information via several plotting options. For the methods behind the computed maturation metrics implemented in this package refer to Khamis, H. J., & Roche, A. F. (1994) <https://pubmed.ncbi.nlm.nih.gov/7936860/>, Mirwald, R.L et al., (2002) <https://pubmed.ncbi.nlm.nih.gov/11932580/> and Cumming, Sean P. et al., (2017) <doi:10.1519/SSC.0000000000000281>.
Maintained by Jose Fernandez. Last updated 3 months ago.
77.0 match 12 stars 3.78 score 1 scripts
ejosymart
sizeMat:Estimate Size at Sexual Maturity
Estimate morphometric and gonadal size at sexual maturity for organisms, usually fish and invertebrates. It includes methods for classification based on relative growth (using principal components analysis, hierarchical clustering, discriminant analysis), logistic regression (Frequentist or Bayes), parameters estimation and some basic plots.
Maintained by Josymar Torrejon-Magallanes. Last updated 1 years ago.
allometric-variablesgonad-maturitymorphometric-maturity
47.9 match 4 stars 4.72 score 26 scripts
sizespectrum
mizer:Dynamic Multi-Species Size Spectrum Modelling
A set of classes and methods to set up and run multi-species, trait based and community size spectrum ecological models, focused on the marine environment.
Maintained by Gustav Delius. Last updated 2 months ago.
ecosystem-modelfish-population-dynamicsfisheriesfisheries-managementmarine-ecosystempopulation-dynamicssimulationsize-structurespecies-interactionstransport-equationcpp
9.7 match 38 stars 9.43 score 207 scripts
wlandau
crew.cluster:Crew Launcher Plugins for Traditional High-Performance Computing Clusters
In computationally demanding analysis projects, statisticians and data scientists asynchronously deploy long-running tasks to distributed systems, ranging from traditional clusters to cloud services. The 'crew.cluster' package extends the 'mirai'-powered 'crew' package with worker launcher plugins for traditional high-performance computing systems. Inspiration also comes from packages 'mirai' by Gao (2023) <https://github.com/shikokuchuo/mirai>, 'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>, 'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>, 'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>), and 'batchtools' by Lang, Bischl, and Surmann (2017). <doi:10.21105/joss.00135>.
Maintained by William Michael Landau. Last updated 1 months ago.
crewhigh-performance-computing
9.1 match 28 stars 6.81 score 68 scripts
ropensci
rfishbase:R Interface to 'FishBase'
A programmatic interface to 'FishBase', re-written based on an accompanying 'RESTful' API. Access tables describing over 30,000 species of fish, their biology, ecology, morphology, and more. This package also supports experimental access to 'SeaLifeBase' data, which contains nearly 200,000 species records for all types of aquatic life not covered by 'FishBase.'
Maintained by Carl Boettiger. Last updated 3 months ago.
6.0 match 116 stars 10.11 score 764 scripts 2 dependents
jonathansmart
AquaticLifeHistory:Life History Analysis Tools
Estimate aquatic species life history using robust techniques. This package supports users undertaking two types of analysis: 1) Growth from length-at-age data, and 2) maturity analyses for length and/or age data. Maturity analyses are performed using generalised linear model approaches incorporating either a binomial or quasibinomial distribution. Growth modelling is performed using the multimodel approach presented by Smart et al. (2016) "Multimodel approaches in shark and ray growth studies: strengths, weaknesses and the future" <doi:10.1111/faf.12154>.
Maintained by Jonathan Smart. Last updated 1 years ago.
11.2 match 8 stars 5.42 score 11 scripts 1 dependents
bioc
INSPEcT:Modeling RNA synthesis, processing and degradation with RNA-seq data
INSPEcT (INference of Synthesis, Processing and dEgradation rates from Transcriptomic data) RNA-seq data in time-course experiments or steady-state conditions, with or without the support of nascent RNA data.
Maintained by Stefano de Pretis. Last updated 5 months ago.
sequencingrnaseqgeneregulationtimecoursesystemsbiology
12.9 match 4.38 score 9 scripts
gadget-framework
gadget3:Globally-Applicable Area Disaggregated General Ecosystem Toolbox V3
A framework to assist creation of marine ecosystem models, generating either 'R' or 'C++' code which can then be optimised using the 'TMB' package and standard 'R' tools. Principally designed to reproduce gadget2 models in 'TMB', but can be extended beyond gadget2's capabilities. Kasper Kristensen, Anders Nielsen, Casper W. Berg, Hans Skaug, Bradley M. Bell (2016) <doi:10.18637/jss.v070.i05> "TMB: Automatic Differentiation and Laplace Approximation.". Begley, J., & Howell, D. (2004) <https://core.ac.uk/download/pdf/225936648.pdf> "An overview of Gadget, the globally applicable area-disaggregated general ecosystem toolbox. ICES.".
Maintained by Jamie Lentin. Last updated 1 months ago.
6.2 match 8 stars 8.66 score 170 scriptsbioc
miRBaseConverter:A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions
A comprehensive tool for converting and retrieving the miRNA Name, Accession, Sequence, Version, History and Family information in different miRBase versions. It can process a huge number of miRNAs in a short time without other depends.
Maintained by Taosheng Xu Taosheng Xu. Last updated 5 months ago.
7.5 match 1 stars 6.50 score 70 scripts
jeremygelb
spNetwork:Spatial Analysis on Network
Perform spatial analysis on network. Implement several methods for spatial analysis on network: Network Kernel Density estimation, building of spatial matrices based on network distance ('listw' objects from 'spdep' package), K functions estimation for point pattern analysis on network, k nearest neighbours on network, reachable area calculation, and graph generation References: Okabe et al (2019) <doi:10.1080/13658810802475491>; Okabe et al (2012, ISBN:978-0470770818);Baddeley et al (2015, ISBN:9781482210200).
Maintained by Jeremy Gelb. Last updated 2 days ago.
kernelkernel-density-estimationnetworknetwork-analysisspatialspatial-analysisspatial-data-analysiscpp
5.3 match 38 stars 7.69 score 52 scripts
fishr-core-team
FSAdata:Data to Support Fish Stock Assessment ('FSA') Package
The datasets to support the Fish Stock Assessment ('FSA') package.
Maintained by Derek Ogle. Last updated 2 years ago.
fishfisheriesfisheries-stock-assessmentfishr-websitestock-assessment
7.1 match 13 stars 5.67 score 285 scripts
haddonm
MQMF:Modelling and Quantitative Methods in Fisheries
Complements the book "Using R for Modelling and Quantitative Methods in Fisheries" ISBN 9780367469894, published in 2021 by Chapman & Hall in their "Using R series". There are numerous functions and data-sets that are used in the book's many practical examples.
Maintained by Malcolm Haddon. Last updated 2 years ago.
ecologyfisherieshaddonquantitative-methodsuncertainty
9.4 match 11 stars 4.14 score 25 scriptsropensci
rb3:Download and Parse Public Data Released by B3 Exchange
Download and parse public files released by B3 and convert them into useful formats and data structures common to data analysis practitioners.
Maintained by Wilson Freitas. Last updated 16 days ago.
brazilexchange-datafinancefinancial-datafinancial-servicesmarket-data
5.0 match 74 stars 7.63 score 48 scripts
r-lib
lifecycle:Manage the Life Cycle of your Package Functions
Manage the life cycle of your exported functions with shared conventions, documentation badges, and user-friendly deprecation warnings.
Maintained by Lionel Henry. Last updated 27 days ago.
2.0 match 95 stars 15.84 score 54 scripts 14k dependents
jrvarma
jrvFinance:Basic Finance; NPV/IRR/Annuities/Bond-Pricing; Black Scholes
Implements the basic financial analysis functions similar to (but not identical to) what is available in most spreadsheet software. This includes finding the IRR and NPV of regularly spaced cash flows and annuities. Bond pricing and YTM calculations are included. In addition, Black Scholes option pricing and Greeks are also provided.
Maintained by Jayanth Varma. Last updated 3 years ago.
5.3 match 11 stars 5.90 score 48 scripts 1 dependents
jonesor
Rage:Life History Metrics from Matrix Population Models
Functions for calculating life history metrics using matrix population models ('MPMs'). Described in Jones et al. (2021) <doi:10.1101/2021.04.26.441330>.
Maintained by Owen Jones. Last updated 3 months ago.
3.3 match 11 stars 8.17 score 62 scripts 1 dependentsbioc
microRNA:Data and functions for dealing with microRNAs
Different data resources for microRNAs and some functions for manipulating them.
Maintained by "Michael Lawrence". Last updated 1 months ago.
infrastructuregenomeannotationsequencematchingcpp
7.5 match 3.48 score 7 scripts
maheshpkumar
bondAnalyst:Methods for Fixed-Income Valuation, Risk and Return
Bond Pricing and Fixed-Income Valuation of Selected Securities included here serve as a quick reference of Quantitative Methods for undergraduate courses on Fixed-Income and CFA Level I Readings on Fixed-Income Valuation, Risk and Return. CFA Institute ("CFA Program Curriculum 2020 Level I Volumes 1-6. (Vol. 5, pp. 107-151, pp. 237-299)", 2019, ISBN: 9781119593577). Barbara S. Petitt ("Fixed Income Analysis", 2019, ISBN: 9781119628132). Frank J. Fabozzi ("Handbook of Finance: Financial Markets and Instruments", 2008, ISBN: 9780470078143). Frank J. Fabozzi ("Fixed Income Analysis", 2007, ISBN: 9780470052211).
Maintained by MaheshP Kumar. Last updated 3 years ago.
24.9 match 1.00 score
rcannood
SCORPIUS:Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data
An accurate and easy tool for performing linear trajectory inference on single cells using single-cell RNA sequencing data. In addition, 'SCORPIUS' provides functions for discovering the most important genes with respect to the reconstructed trajectory, as well as nice visualisation tools. Cannoodt et al. (2016) <doi:10.1101/079509>.
Maintained by Robrecht Cannoodt. Last updated 2 years ago.
2.9 match 59 stars 8.17 score 126 scripts
justinmshea
neverhpfilter:An Alternative to the Hodrick-Prescott Filter
In the working paper titled "Why You Should Never Use the Hodrick-Prescott Filter", James D. Hamilton proposes a new alternative to economic time series filtering. The neverhpfilter package provides functions and data for reproducing his work. Hamilton (2017) <doi:10.3386/w23429>.
Maintained by Justin M. Shea. Last updated 2 years ago.
3.5 match 14 stars 5.93 score 61 scripts
gnelson12
fishmethods:Fishery Science Methods and Models
Functions for applying a wide range of fisheries stock assessment methods.
Maintained by Gary A. Nelson. Last updated 1 months ago.
4.7 match 5 stars 4.12 score 136 scripts 1 dependents
r4ss
r4ss:R Code for Stock Synthesis
A collection of R functions for use with Stock Synthesis, a fisheries stock assessment modeling platform written in ADMB by Dr. Richard D. Methot at the NOAA Northwest Fisheries Science Center. The functions include tools for summarizing and plotting results, manipulating files, visualizing model parameterizations, and various other common stock assessment tasks. This version of '{r4ss}' is compatible with Stock Synthesis versions 3.24 through 3.30 (specifically version 3.30.23.1, from December 2024). Support for 3.24 models is only through the core functions for reading output and plotting.
Maintained by Ian G. Taylor. Last updated 5 days ago.
fisheriesfisheries-stock-assessmentstock-synthesis
1.6 match 43 stars 11.38 score 1.0k scripts 2 dependents
ruben-hernan
LifeHist:Life History Models of Individuals
Likelihood-based estimation of individual growth and sexual maturity models for organisms, usually fish and invertebrates. It includes methods for data organization, plotting standard exploratory and analytical plots, predictions.
Maintained by Ruben H. Roa-Ureta. Last updated 10 years ago.
14.0 match 1.30 score 20 scripts
flr
FLCore:Core Package of FLR, Fisheries Modelling in R
Core classes and methods for FLR, a framework for fisheries modelling and management strategy simulation in R. Developed by a team of fisheries scientists in various countries. More information can be found at <http://flr-project.org/>.
Maintained by Iago Mosqueira. Last updated 10 days ago.
fisheriesflrfisheries-modelling
1.8 match 16 stars 8.78 score 956 scripts 23 dependents
spkaluzny
splusTimeSeries:Time Series from 'S-PLUS'
A collection of classes and methods for working with indexed rectangular data. The index values can be calendar (timeSeries class) or numeric (signalSeries class). Methods are included for aggregation, alignment, merging, and summaries. The code was originally available in 'S-PLUS'.
Maintained by Stephen Kaluzny. Last updated 6 months ago.
3.8 match 3.95 score 20 scripts 1 dependents
slwu89
MicroMoB:Discrete Time Simulation of Mosquito-Borne Pathogen Transmission
Provides a framework based on S3 dispatch for constructing models of mosquito-borne pathogen transmission which are constructed from submodels of various components (i.e. immature and adult mosquitoes, human populations). A consistent mathematical expression for the distribution of bites on hosts means that different models (stochastic, deterministic, etc.) can be coherently incorporated and updated over a discrete time step.
Maintained by Sean L. Wu. Last updated 2 years ago.
3.3 match 4.16 score 32 scripts
moosa-r
rbioapi:User-Friendly R Interface to Biologic Web Services' API
Currently fully supports Enrichr, JASPAR, miEAA, PANTHER, Reactome, STRING, and UniProt! The goal of rbioapi is to provide a user-friendly and consistent interface to biological databases and services. In a way that insulates the user from the technicalities of using web services API and creates a unified and easy-to-use interface to biological and medical web services. This is an ongoing project; New databases and services will be added periodically. Feel free to suggest any databases or services you often use.
Maintained by Moosa Rezwani. Last updated 1 months ago.
api-clientbioinformaticsbiologyenrichmentenrichment-analysisenrichrjasparmieaaover-representation-analysispantherreactomestringuniprot
1.8 match 20 stars 7.60 score 55 scripts
canmod
macpan2:Fast and Flexible Compartmental Modelling
Fast and flexible compartmental modelling with Template Model Builder.
Maintained by Steve Walker. Last updated 3 days ago.
compartmental-modelsepidemiologyforecastingmixed-effectsmodel-fittingoptimizationsimulationsimulation-modelingcpp
1.5 match 4 stars 8.89 score 246 scripts 1 dependents
marie-perrotdockes
MultiVarSel:Variable Selection in a Multivariate Linear Model
It performs variable selection in a multivariate linear model by estimating the covariance matrix of the residuals then use it to remove the dependence that may exist among the responses and eventually performs variable selection by using the Lasso criterion. The method is described in the paper Perrot-Dockès et al. (2017) <arXiv:1704.00076>.
Maintained by Marie Perrot-Dockès. Last updated 6 years ago.
6.4 match 2.00 score 8 scripts
arni-magnusson
scape:Statistical Catch-at-Age Plotting Environment
Import, plot, and diagnose results from statistical catch-at-age models, used in fisheries stock assessment.
Maintained by Arni Magnusson. Last updated 5 months ago.
2.0 match 5.72 score 35 scripts
openbiox
UCSCXenaShiny:Interactive Analysis of UCSC Xena Data
Provides functions and a Shiny application for downloading, analyzing and visualizing datasets from UCSC Xena (<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
Maintained by Shixiang Wang. Last updated 4 months ago.
cancer-datasetshiny-appsucsc-xena
1.2 match 96 stars 8.54 score 35 scripts
michaelspence
LeMaRns:Length-Based Multispecies Analysis by Numerical Simulation
Set up, run and explore the outputs of the Length-based Multi-species model (LeMans; Hall et al. 2006 <doi:10.1139/f06-039>), focused on the marine environment.
Maintained by Michael A. Spence. Last updated 5 years ago.
3.2 match 2.90 score 16 scripts
dipterix
rutabaga:Simple R Tools for Analysis and Visualizations
Provides functions (R, C++) to speed up array calculations. Includes various tools for prettier visualizations via R base plots.
Maintained by Zhengjia Wang. Last updated 3 years ago.
5.4 match 1.70 score 2 scripts
adrianhordyk
LBSPR:Length-Based Spawning Potential Ratio
Simulate expected equilibrium length composition, yield-per-recruit, and the spawning potential ratio (SPR) using the length-based SPR (LBSPR) model. Fit the LBSPR model to length data to estimate selectivity, relative apical fishing mortality, and the spawning potential ratio for data-limited fisheries. See Hordyk et al (2016) <doi:10.1139/cjfas-2015-0422> for more information about the LBSPR assessment method.
Maintained by Adrian Hordyk. Last updated 2 years ago.
1.8 match 7 stars 4.90 score 114 scripts
deepwaterimr
ggFishPlots:Visualise and Calculate Life History Parameters for Fisheries Science using 'ggplot2'
Contains functions to create life history parameter plots from raw data. The plots are created using 'ggplot2', and calculations done using the 'tidyverse' collection of packages. The package contains references to FishBase (Froese R., Pauly D., 2023) <https://www.fishbase.se/>.
Maintained by Mikko Vihtakari. Last updated 1 months ago.
2.0 match 7 stars 3.85 score 2 scripts
cran
sTSD:Simulate Time Series Diagnostics
These are tools that allow users to do time series diagnostics, primarily tests of unit root, by way of simulation. While there is nothing necessarily wrong with the received wisdom of critical values generated decades ago, simulation provides its own perks. Not only is simulation broadly informative as to what these various test statistics do and what are their plausible values, simulation provides more flexibility for assessing unit root by way of different thresholds or different hypothesized distributions.
Maintained by Steven Miller. Last updated 2 months ago.
3.4 match 2.00 score
byzheng
expDB:Database for Experiment Dataset
A 'SQLite' database is designed to store all information of experiment-based data including metadata, experiment design, managements, phenotypic values and climate records. The dataset can be imported from an 'Excel' file.
Maintained by Bangyou Zheng. Last updated 1 years ago.
2.3 match 2.70 score 4 scriptscran
YieldCurve:Modelling and Estimation of the Yield Curve
Modelling the yield curve with some parametric models. The models implemented are: Nelson, C.R., and A.F. Siegel (1987) <doi: 10.1086/296409>, Diebold, F.X. and Li, C. (2006) <doi: 10.1016/j.jeconom.2005.03.005> and Svensson, L.E. (1994) <doi: 10.3386/w4871>. The package also includes the data of the term structure of interest rate of Federal Reserve Bank and European Central Bank.
Maintained by Sergio Salvino Guirreri. Last updated 2 years ago.
3.2 match 5 stars 1.70 score
cran
ragtop:Pricing Equity Derivatives with Extensions of Black-Scholes
Algorithms to price American and European equity options, convertible bonds and a variety of other financial derivatives. It uses an extension of the usual Black-Scholes model in which jump to default may occur at a probability specified by a power-law link between stock price and hazard rate as found in the paper by Takahashi, Kobayashi, and Nakagawa (2001) <doi:10.3905/jfi.2001.319302>. We use ideas and techniques from Andersen and Buffum (2002) <doi:10.2139/ssrn.355308> and Linetsky (2006) <doi:10.1111/j.1467-9965.2006.00271.x>.
Maintained by Brian K. Boonstra. Last updated 5 years ago.
1.8 match 2.70 score
eddelbuettel
RcppSpdlog:R and C++ Interfaces to 'spdlog' C++ Header Library for Logging
The mature and widely-used C++ logging library 'spdlog' by Gabi Melman provides many desirable features. This package bundles these header files for easy use by R packages from both their R and C or C++ code. Explicit use via 'LinkingTo:' is also supported. Also see the 'spdl' package which enhanced this package with a consistent R and C++ interface.
Maintained by Dirk Eddelbuettel. Last updated 1 months ago.
0.5 match 16 stars 8.36 score 6 scripts 13 dependentsbioc
srnadiff:Finding differentially expressed unannotated genomic regions from RNA-seq data
srnadiff is a package that finds differently expressed regions from RNA-seq data at base-resolution level without relying on existing annotation. To do so, the package implements the identify-then-annotate methodology that builds on the idea of combining two pipelines approachs differential expressed regions detection and differential expression quantification. It reads BAM files as input, and outputs a list differentially regions, together with the adjusted p-values.
Maintained by Zytnicki Matthias. Last updated 2 months ago.
immunooncologygeneexpressioncoveragesmallrnaepigeneticsstatisticalmethodpreprocessingdifferentialexpressioncpp
1.1 match 3.70 score 3 scriptsbioc
eisaR:Exon-Intron Split Analysis (EISA) in R
Exon-intron split analysis (EISA) uses ordinary RNA-seq data to measure changes in mature RNA and pre-mRNA reads across different experimental conditions to quantify transcriptional and post-transcriptional regulation of gene expression. For details see Gaidatzis et al., Nat Biotechnol 2015. doi: 10.1038/nbt.3269. eisaR implements the major steps of EISA in R.
Maintained by Michael Stadler. Last updated 2 months ago.
transcriptiongeneexpressiongeneregulationfunctionalgenomicstranscriptomicsregressionrnaseq
0.5 match 16 stars 7.48 score 63 scripts
gleidsonuern
bodycomp:Percent Body Fat Values Using Anthropometric Prediction Equations
Skinfold measurements is one of the most popular and practical methods for estimating percent body fat. Body composition is a term that describes the relative proportions of fat, bone, and muscle mass in the human body. Following the collection of skinfold measurements, regression analysis (a statistical procedure used to predict a dependent variable based on one or more independent or predictor variables) is used to estimate total percent body fat in humans. <doi:10.4324/9780203868744>.
Maintained by Gleidson Mendes Rebouças. Last updated 3 years ago.
3.6 match 1.00 score
shrektan
fcl:A Financial Calculator
A financial calculator that provides very fast implementations of common financial indicators using 'Rust' code. It includes functions for bond-related indicators, such as yield to maturity ('YTM'), modified duration, and Macaulay duration, as well as functions for calculating time-weighted and money-weighted rates of return (using 'Modified Dietz' method) for multiple portfolios, given their market values and profit and loss ('PnL') data. 'fcl' is designed to be efficient and accurate for financial analysis and computation. The methods used in this package are based on the following references: <https://en.wikipedia.org/wiki/Modified_Dietz_method>, <https://en.wikipedia.org/wiki/Time-weighted_return>.
Maintained by Xianying Tan. Last updated 4 months ago.
0.5 match 2 stars 5.39 score 27 scripts
gpilgrim2670
SwimmeR:Data Import, Cleaning, and Conversions for Swimming Results
The goal of the 'SwimmeR' package is to provide means of acquiring, and then analyzing, data from swimming (and diving) competitions. To that end 'SwimmeR' allows results to be read in from .html sources, like 'Hy-Tek' real time results pages, '.pdf' files, 'ISL' results, 'Omega' results, and (on a development basis) '.hy3' files. Once read in, 'SwimmeR' can convert swimming times (performances) between the computationally useful format of seconds reported to the '100ths' place (e.g. 95.37), and the conventional reporting format (1:35.37) used in the swimming community. 'SwimmeR' can also score meets in a variety of formats with user defined point values, convert times between courses ('LCM', 'SCM', 'SCY') and draw single elimination brackets, as well as providing a suite of tools for working cleaning swimming data. This is a developmental package, not yet mature.
Maintained by Greg Pilgrim. Last updated 2 years ago.
0.5 match 4 stars 4.53 score 17 scripts
jimclarkatduke
mastif:Mast Inference and Forecasting
Analyzes production and dispersal of seeds dispersed from trees and recovered in seed traps. Motivated by long-term inventory plots where seed collections are used to infer seed production by each individual plant.
Maintained by James S. Clark. Last updated 12 months ago.
1.1 match 2.00 score
mlthom
cogirt:Cognitive Testing Using Item Response Theory
Psychometrically analyze latent individual differences related to tasks, interventions, or maturational/aging effects in the context of experimental or longitudinal cognitive research using methods first described by Thomas et al. (2020) <doi:10.1177/0013164420919898>.
Maintained by Michael Thomas. Last updated 1 months ago.
0.5 match 4.00 score 2 scriptsbioc
miRNAmeConverter:Convert miRNA Names to Different miRBase Versions
Translating mature miRNA names to different miRBase versions, sequence retrieval, checking names for validity and detecting miRBase version of a given set of names (data from http://www.mirbase.org/).
Maintained by Stefan J. Haunsberger. Last updated 5 months ago.
0.5 match 3.78 score 4 scripts
mrbcuda
ustyc:Fetch US Treasury yield curve data.
Forms a query to submit for US Treasury yield curve data, posting this query to the US Treasury web site's data feed service. By default the download includes data yield data for 12 products from January 1, 1990, some of which are NA during this span. The caller can pass parameters to limit the query to a certain year or year and month, but the full download is not especially large. The download data from the service is in XML format. The package's main function transforms that XML data into a numeric data frame with treasury product items (constant maturity yields for 12 kinds of bills, notes, and bonds) as columns and dates as row names. The function returns a list which includes an item for this data frame as well as query-related values for reference and the update date from the service.
Maintained by Matt Barry. Last updated 5 years ago.
0.5 match 9 stars 3.65 score 9 scripts
mdkrause
SoyURT:USDA Northern Region Uniform Soybean Tests Dataset
Data sets used by 'Krause et al. (2022)' <doi:10.1101/2022.04.11.487885>. It comprises phenotypic records obtained from the USDA Northern Region Uniform Soybean Tests from 1989 to 2019 for maturity groups II and III. In addition, soil and weather variables are provided for the 591 observed environments (combination of locations and years).
Maintained by Matheus Dalsente Krause. Last updated 8 months ago.
0.5 match 1 stars 2.70 score 5 scripts
jmmonnet
lidaRtRee:Forest Analysis with Airborne Laser Scanning (LiDAR) Data
Provides functions for forest objects detection, structure metrics computation, model calibration and mapping with airborne laser scanning: co-registration of field plots (Monnet and Mermin (2014) <doi:10.3390/f5092307>); tree detection (method 1 in Eysn et al. (2015) <doi:10.3390/f6051721>) and segmentation; forest parameters estimation with the area-based approach: model calibration with ground reference, and maps export (Aussenac et al. (2023) <doi:10.12688/openreseurope.15373.2>); extraction of both physical (gaps, edges, trees) and statistical features useful for e.g. habitat suitability modeling (Glad et al. (2020) <doi:10.1002/rse2.117>) and forest maturity mapping (Fuhr et al. (2022) <doi:10.1002/rse2.274>).
Maintained by Jean-Matthieu Monnet. Last updated 2 months ago.
0.5 match 3 stars 2.18 score
aursiber
CINID:Curculionidae INstar IDentification
Method for identifying the instar of Curculionid larvae from the observed distribution of the headcapsule size of mature larvae.
Maintained by Aurelie Siberchicot. Last updated 5 years ago.
0.5 match 1.70 score 3 scripts
cran
BondValuation:Fixed Coupon Bond Valuation Allowing for Odd Coupon Periods and Various Day Count Conventions
Analysis of large datasets of fixed coupon bonds, allowing for irregular first and last coupon periods and various day count conventions. With this package you can compute the yield to maturity, the modified and MacAulay durations and the convexity of fixed-rate bonds. It provides the function AnnivDates, which can be used to evaluate the quality of the data and return time-invariant properties and temporal structure of a bond.
Maintained by Djatschenko Wadim. Last updated 3 years ago.
0.5 match 1.00 score 8 scriptscran
sephora:Statistical Estimation of Phenological Parameters
Provides functions and methods for estimating phenological dates (green up, start of a season, maturity, senescence, end of a season and dormancy) from (nearly) periodic Earth Observation time series. These dates are critical points of some derivatives of an idealized curve which, in turn, is obtained through a functional principal component analysis-based regression model. Some of the methods implemented here are based on T. Krivobokova, P. Serra and F. Rosales (2022) <https://www.sciencedirect.com/science/article/pii/S0167947322000998>. Methods for handling and plotting Earth observation time series are also provided.
Maintained by Inder Tecuapetla-Gómez. Last updated 1 years ago.
0.5 match 1.00 score