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cogdisreslab
KRSA:KRSA: Kinome Random Sampling Analyzer
The goal of this package is to analyze the PamChip data and identify the changes in the active kinome. The package can preprocess the PamChip data output from BioNavigator and use Random Sampling and Permutation Analysis to identify upstream kinases. Additionally, this package provides a set of useful visualizations for the PamChip data.
Maintained by Ali Sajid Imami. Last updated 10 days ago.
kinasephosphatasespamchipkinomerandom samplingpermutation analysis
15.2 match 4 stars 4.42 score 49 scriptscogdisreslab
creedenzymatic:creedenzymatic
Combine kinome results from KRSA and UKA and other tools A package for integrating upstream kinases analyses
Maintained by Ali Sajid Imami. Last updated 12 months ago.
bioconductorbioconductor-packagekinome
10.5 match 1 stars 3.60 score 20 scriptscogdisreslab
kinograte:Kinograte: Netwrok-based multi-omics Integration
Netwrok-based multi-omics integration using a prize-collecting Steiner forest (PCSF) algorithm.
Maintained by Khaled Alganem. Last updated 3 years ago.
4.0 match 1.70 score 2 scriptscogdisreslab
KINNET:Kinase INteraction NETwork Generation
This package provides the functionality to process PamGene's PamChip Data Output and generate kinase interaction networks from that. This project uses a bayesian algorithm to generate bayesian networks for defining dependence relationships between peptide sequences in the PamChip data. It then uses a novel kinase assignment method to assign upstream kinases to each peptide which is then output as a graph.
Maintained by Ali Sajid Imami. Last updated 3 years ago.
2.0 match 2 stars 2.00 score 3 scripts