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cox-labs
PerseusR:Perseus R Interop
Enables the interoperability between the Perseus platform for omics data analysis (Tyanova et al. 2016) <doi:10.1038/nmeth.3901> and R. It provides the foundation for developing and running Perseus plugins implemented in R by providing all required input and output handling, including data and parameter parsing as described in Rudolph and Cox 2018 <doi:10.1101/447268>.
Maintained by Jan Rudolph. Last updated 3 years ago.
bioinformaticsinteropmaxquantperseusproteomics
14.3 match 13 stars 5.88 score 58 scripts
bioc
basecallQC:Working with Illumina Basecalling and Demultiplexing input and output files
The basecallQC package provides tools to work with Illumina bcl2Fastq (versions >= 2.1.7) software.Prior to basecalling and demultiplexing using the bcl2Fastq software, basecallQC functions allow the user to update Illumina sample sheets from versions <= 1.8.9 to >= 2.1.7 standards, clean sample sheets of common problems such as invalid sample names and IDs, create read and index basemasks and the bcl2Fastq command. Following the generation of basecalled and demultiplexed data, the basecallQC packages allows the user to generate HTML tables, plots and a self contained report of summary metrics from Illumina XML output files.
Maintained by Thomas Carroll. Last updated 5 months ago.
sequencinginfrastructuredataimportqualitycontrol
1.7 match 4.32 score 21 scripts