Showing 10 of total 10 results (show query)
ropensci
ijtiff:Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files
General purpose TIFF file I/O for R users. Currently the only such package with read and write support for TIFF files with floating point (real-numbered) pixels, and the only package that can correctly import TIFF files that were saved from 'ImageJ' and write TIFF files than can be correctly read by 'ImageJ' <https://imagej.net/ij/>. Also supports text image I/O.
Maintained by Rory Nolan. Last updated 5 days ago.
image-manipulationimagejpeer-reviewedtiff-filestiff-imagestiff
22.3 match 18 stars 8.97 score 36 scripts 7 dependents
davidcsterratt
RImageJROI:Read and Write 'ImageJ' Region of Interest (ROI) Files
Provides functions to read and write 'ImageJ' (<https://imagej.net>) Region of Interest (ROI) files, to plot the ROIs and to convert them to 'spatstat' (<https://spatstat.org/>) spatial patterns.
Maintained by David C Sterratt. Last updated 7 months ago.
12.5 match 12 stars 3.83 score 28 scripts
rorynolan
autothresholdr:An R Port of the 'ImageJ' Plugin 'Auto Threshold'
Algorithms for automatically finding appropriate thresholds for numerical data, with special functions for thresholding images. Provides the 'ImageJ' 'Auto Threshold' plugin functionality to R users. See <https://imagej.net/plugins/auto-threshold> and Landini et al. (2017) <DOI:10.1111/jmi.12474>.
Maintained by Rory Nolan. Last updated 1 years ago.
3.7 match 6 stars 6.73 score 31 scripts 4 dependents
mattocci27
LeafArea:Rapid Digital Image Analysis of Leaf Area
An interface for the image processing program 'ImageJ', which allows a rapid digital image analysis for particle sizes. This package includes function to write an 'ImageJ' macro which is optimized for a leaf area analysis by default.
Maintained by Masatoshi Katabuchi. Last updated 2 years ago.
2.8 match 36 stars 4.84 score 19 scripts
leef-uzh
bemovi.LEEF:BEMOVI, software for extracting BEhaviour and MOrphology from VIdeos. This version is adapted for LEEF-UZH
An R and ImageJ based work flow to automatically measure behaviour and morphology from videos. Moving individuals are identified by background subtraction, morphology extracted, and trajectories assembled through time from coordinate data. Abundance, morphology and behaviour can be summarized based on trajectory data.
Maintained by Rainer M Krug. Last updated 1 years ago.
3.5 match 3.32 score 2 dependents
yeyuan98
ijAnalysis:Miscellaneous tools for image analysis tasks
A miscellaneous toolbox for various image analysis tasks. Initially contains tools for downstream analysis of my ImageJ plugin Puncta Tracker and hence the ij name. Part of the y3628 analysis suite.
Maintained by Ye Yuan. Last updated 1 months ago.
3.9 match 2.85 score 1 scripts
stathwang
patternator:Feature Extraction from Female Brown Anole Lizard Dorsal Patterns
Provides a set of functions to efficiently recognize and clean the continuous dorsal pattern of a female brown anole lizard (Anolis sagrei) traced from 'ImageJ', an open platform for scientific image analysis (see <https://imagej.net> for more information), and extract common features such as the pattern sinuosity indices, coefficient of variation, and max-min width.
Maintained by Seong Hyun Hwang. Last updated 8 years ago.
2.4 match 1.00 score 2 scripts
guanqiaoding
frapplot:Automatic Data Processing and Visualization for FRAP
Automatically process Fluorescence Recovery After Photobleaching (FRAP) data and generate consistent, publishable figures. Note: this package does not replace 'ImageJ' (or its equivalence) in raw image quantification. Some references about the methods: Sprague, Brian L. (2004) <doi:10.1529/biophysj.103.026765>; Day, Charles A. (2012) <doi:10.1002/0471142956.cy0219s62>.
Maintained by Guanqiao Ding. Last updated 6 years ago.
0.5 match 5 stars 3.40 score 4 scripts
burgerga
mdftracks:Read and Write 'MTrackJ Data Files'
'MTrackJ' is an 'ImageJ' plugin for motion tracking and analysis (see <https://imagescience.org/meijering/software/mtrackj/>). This package reads and writes 'MTrackJ Data Files' ('.mdf', see <https://imagescience.org/meijering/software/mtrackj/format/>). It supports 2D data and read/writes cluster, point, and channel information. If desired, generates track identifiers that are unique over the clusters. See the project page for more information and examples.
Maintained by Gerhard Burger. Last updated 1 years ago.
0.5 match 1 stars 2.78 score 12 scripts
phgrosjean
zooimage:Analysis of Numerical Plankton Images
A free (open source) solution for analyzing digital images of plankton. In combination with ImageJ, a free image analysis system, it processes digital images, measures individuals, trains for automatic classification of taxa, and finally, measures plankton samples (abundances, total and partial size spectra or biomasses, etc.).
Maintained by Philippe Grosjean. Last updated 7 years ago.
0.5 match 1.32 score 21 scripts