Showing 3 of total 3 results (show query)
jlmelville
RcppHNSW:'Rcpp' Bindings for 'hnswlib', a Library for Approximate Nearest Neighbors
'Hnswlib' is a C++ library for Approximate Nearest Neighbors. This package provides a minimal R interface by relying on the 'Rcpp' package. See <https://github.com/nmslib/hnswlib> for more on 'hnswlib'. 'hnswlib' is released under Version 2.0 of the Apache License.
Maintained by James Melville. Last updated 3 months ago.
approximate-nearest-neighbor-searchhnswk-nearest-neighborsknnnearest-neighbor-searchnmslibrcppcpp
11.0 match 36 stars 10.07 score 63 scripts 77 dependents
bioc
recountmethylation:Access and analyze public DNA methylation array data compilations
Resources for cross-study analyses of public DNAm array data from NCBI GEO repo, produced using Illumina's Infinium HumanMethylation450K (HM450K) and MethylationEPIC (EPIC) platforms. Provided functions enable download, summary, and filtering of large compilation files. Vignettes detail background about file formats, example analyses, and more. Note the disclaimer on package load and consult the main manuscripts for further info.
Maintained by Sean K Maden. Last updated 5 months ago.
dnamethylationepigeneticsmicroarraymethylationarrayexperimenthub
1.2 match 9 stars 6.28 score 9 scriptsbioc
BiocNeighbors:Nearest Neighbor Detection for Bioconductor Packages
Implements exact and approximate methods for nearest neighbor detection, in a framework that allows them to be easily switched within Bioconductor packages or workflows. Exact searches can be performed using the k-means for k-nearest neighbors algorithm or with vantage point trees. Approximate searches can be performed using the Annoy or HNSW libraries. Searching on either Euclidean or Manhattan distances is supported. Parallelization is achieved for all methods by using BiocParallel. Functions are also provided to search for all neighbors within a given distance.
Maintained by Aaron Lun. Last updated 12 days ago.
0.5 match 10.14 score 646 scripts 89 dependents