Showing 17 of total 17 results (show query)
gustavobio
flora:Tools for Interacting with the Brazilian Flora 2020
Tools to quickly compile taxonomic and distribution data from the Brazilian Flora 2020.
Maintained by Gustavo Carvalho. Last updated 1 years ago.
63.1 match 29 stars 5.37 score 54 scripts 1 dependents
wevertonbio
florabr:Explore Flora e Funga do Brasil Database
A collection of functions designed to retrieve, filter and spatialize data from the Flora e Funga do Brasil dataset. For more information about the dataset, please visit <https://floradobrasil.jbrj.gov.br/consulta/>.
Maintained by Weverton Trindade. Last updated 3 months ago.
20.4 match 2 stars 5.72 score 12 scripts
florale
multilevelcoda:Estimate Bayesian Multilevel Models for Compositional Data
Implement Bayesian Multilevel Modelling for compositional data in a multilevel framework. Compute multilevel compositional data and Isometric log ratio (ILR) at between and within-person levels, fit Bayesian multilevel models for compositional predictors and outcomes, and run post-hoc analyses such as isotemporal substitution models. References: Le, Stanford, Dumuid, and Wiley (2024) <doi:10.48550/arXiv.2405.03985>, Le, Dumuid, Stanford, and Wiley (2024) <doi:10.48550/arXiv.2411.12407>.
Maintained by Flora Le. Last updated 3 days ago.
bayesian-inferencecompositional-data-analysismultilevel-modelsmultilevelcoda
9.1 match 14 stars 8.31 score 118 scripts
paulesantos
peruflorads43:Reviewed Official Classification of Endangered Wild Flora Species in Peru
Provide users with a convenient way to access and analyze information on endangered plant species in Peru based on `Decreto Supremo N 043-2006-AG - Aprueban categorizacion de especies amenazadas de flora silvestre`<https://sinia.minam.gob.pe/normas/aprueban-categorizacion-especies-amenazadas-flora-silvestre>.
Maintained by Paul E. Santos Andrade. Last updated 2 years ago.
21.0 match 2.70 score 2 scripts
lbbe-software
nlsMicrobio:Nonlinear Regression in Predictive Microbiology
Data sets and nonlinear regression models dedicated to predictive microbiology.
Maintained by Aurelie Siberchicot. Last updated 13 days ago.
7.0 match 1 stars 5.57 score 41 scripts 1 dependents
roelandkindt
WorldFlora:Standardize Plant Names According to World Flora Online Taxonomic Backbone
World Flora Online is an online flora of all known plants, available from <https://www.worldfloraonline.org/>. Methods are provided of matching a list of plant names (scientific names, taxonomic names, botanical names) against a static copy of the World Flora Online Taxonomic Backbone data that can be downloaded from the World Flora Online website. The World Flora Online Taxonomic Backbone is an updated version of The Plant List (<http://www.theplantlist.org/>), a working list of plant names that has become static since 2013.
Maintained by Roeland Kindt. Last updated 6 months ago.
10.5 match 3 stars 3.09 score 33 scripts 1 dependents
biogeomacro
GIFT:Access to the Global Inventory of Floras and Traits (GIFT)
Retrieving regional plant checklists, species traits and distributions, and environmental data from the Global Inventory of Floras and Traits (GIFT). More information about the GIFT database can be found at <https://gift.uni-goettingen.de/about> and the map of available floras can be visualized at <https://gift.uni-goettingen.de/map>. The API and associated queries can be accessed according the following scheme: <https://gift.uni-goettingen.de/api/extended/index2.0.php?query=env_raster>.
Maintained by Pierre Denelle. Last updated 7 days ago.
biodiversitybiodiversity-informaticsplants-databaseplants-distribution
3.7 match 18 stars 6.51 score 24 scripts
temp20250212
MultiTraits:Analyzing and Visualizing Multidimensional Plant Traits
Implements analytical methods for multidimensional plant traits, including Competitors-Stress tolerators-Ruderals strategy analysis using leaf traits, Leaf-Height-Seed strategy analysis, Niche Periodicity Table analysis, and Trait Network analysis. Provides functions for data analysis, visualization, and network metrics calculation. Methods are based on Grime (1974) <doi:10.1038/250026a0>, Pierce et al. (2017) <doi:10.1111/1365-2435.12882>, Westoby (1998) <doi:10.1023/A:1004327224729>, Yang et al. (2022) <doi:10.1016/j.foreco.2022.120540>, Winemiller et al. (2015) <doi:10.1111/ele.12462>, He et al. (2020) <doi:10.1016/j.tree.2020.06.003>.
Maintained by Anonymous Author. Last updated 24 days ago.
4.5 match 3.90 score 16 scripts
jayemerson
gpairs:The Generalized Pairs Plot
Offers a generalization of the scatterplot matrix based on the recognition that most datasets include both categorical and quantitative information. Traditional grids of scatterplots often obscure important features of the data when one or more variables are categorical but coded as numerical. The generalized pairs plot offers a range of displays of paired combinations of categorical and quantitative variables. Emerson et al. (2013) <DOI:10.1080/10618600.2012.694762>.
Maintained by John W. Emerson. Last updated 5 years ago.
3.8 match 3.77 score 117 scripts
cseljatib
datana:Datasets and Functions to Accompany Analisis De Datos Con R
Datasets and functions to accompany the book 'Analisis de datos con el programa estadistico R: una introduccion aplicada' by Salas-Eljatib (2021, ISBN: 9789566086109). The package helps carry out data management, exploratory analyses, and model fitting.
Maintained by Christian Salas-Eljatib. Last updated 6 months ago.
8.5 match 1.30 score 1 scripts
ajpelu
famexploreR:Exploration of Threathened Flora field data
A shiny app that explores data from Threathened Flora. It uses customized forms to explore the data and generate several plots, tables.
Maintained by Antonio Jesús Pérez-Luque. Last updated 4 months ago.
3.5 match 2 stars 2.60 score 2 scripts
giobo
TR8:A Tool for Downloading Functional Traits Data for Plant Species
Plant ecologists often need to collect "traits" data about plant species which are often scattered among various databases: TR8 contains a set of tools which take care of automatically retrieving some of those functional traits data for plant species from publicly available databases (The Ecological Flora of the British Isles, LEDA traitbase, Ellenberg values for Italian Flora, Mycorrhizal intensity databases, BROT, PLANTS, Jepson Flora Project). The TR8 name, inspired by "car plates" jokes, was chosen since it both reminds of the main object of the package and is extremely short to type.
Maintained by Gionata Bocci. Last updated 6 months ago.
0.9 match 20 stars 6.16 score 16 scripts
eduardoarle
bRacatus:A Method to Estimate the Accuracy and Biogeographical Status of Georeferenced Biological Data
Automated assessment of accuracy and geographical status of georeferenced biological data. The methods rely on reference regions, namely checklists and range maps. Includes functions to obtain data from the Global Biodiversity Information Facility <https://www.gbif.org/> and from the Global Inventory of Floras and Traits <https://gift.uni-goettingen.de/home>. Alternatively, the user can input their own data. Furthermore, provides easy visualisation of the data and the results through the plotting functions. Especially suited for large datasets. The reference for the methodology is: Arlé et al. (under review).
Maintained by Eduardo Arlé. Last updated 11 months ago.
0.5 match 8 stars 4.08 score 4 scripts
bemts-hhs
traumar:Calculate Metrics for Trauma System Performance
Hospitals, hospital systems, and even trauma systems that provide care to injured patients may not be aware of robust metrics that can help gauge the efficacy of their programs in saving the lives of injured patients. 'traumar' provides robust functions driven by the academic literature to automate the calculation of relevant metrics to individuals desiring to measure the performance of their trauma center or even a trauma system. 'traumar' also provides some helper functions for the data analysis journey. Users can refer to the following publications for descriptions of the methods used in 'traumar'. TRISS methodology, including probability of survival, and the W, M, and Z Scores - Flora (1978) <doi:10.1097/00005373-197810000-00003>, Boyd et al. (1987, PMID:3106646), Llullaku et al. (2009) <doi:10.1186/1749-7922-4-2>, Singh et al. (2011) <doi:10.4103/0974-2700.86626>, Baker et al. (1974, PMID:4814394), and Champion et al. (1989) <doi:10.1097/00005373-198905000-00017>. For the Relative Mortality Metric, see Napoli et al. (2017) <doi:10.1080/24725579.2017.1325948>, Schroeder et al. (2019) <doi:10.1080/10903127.2018.1489021>, and Kassar et al. (2016) <doi:10.1177/00031348221093563>.
Maintained by Nicolas Foss. Last updated 16 days ago.
emsmortalitypiprobabilityqualitysurvivaltraumatriss
0.5 match 3 stars 4.02 score
philchalmers
faoutlier:Influential Case Detection Methods for Factor Analysis and Structural Equation Models
Tools for detecting and summarize influential cases that can affect exploratory and confirmatory factor analysis models as well as structural equation models more generally (Chalmers, 2015, <doi:10.1177/0146621615597894>; Flora, D. B., LaBrish, C. & Chalmers, R. P., 2012, <doi:10.3389/fpsyg.2012.00055>).
Maintained by Phil Chalmers. Last updated 2 years ago.
0.5 match 7 stars 3.80 score 18 scripts
knickodem
kfa:K-Fold Cross Validation for Factor Analysis
Provides functions to identify plausible and replicable factor structures for a set of variables via k-fold cross validation. The process combines the exploratory and confirmatory factor analytic approach to scale development (Flora & Flake, 2017) <doi:10.1037/cbs0000069> with a cross validation technique that maximizes the available data (Hastie, Tibshirani, & Friedman, 2009) <isbn:978-0-387-21606-5>. Also available are functions to determine k by drawing on power analytic techniques for covariance structures (MacCallum, Browne, & Sugawara, 1996) <doi:10.1037/1082-989X.1.2.130>, generate model syntax, and summarize results in a report.
Maintained by Kyle Nickodem. Last updated 1 years ago.
cross-validationfactor-analysispsychometricsscale-development
0.5 match 7 stars 3.54 score 7 scripts
