Showing 10 of total 10 results (show query)
thoree
Familias:Probabilities for Pedigrees Given DNA Data
An interface to the core 'Familias' functions which are programmed in C++. The implementation is described in Egeland, Mostad and Olaisen (1997) <doi:10.1016/S1355-0306(97)72202-0> and Simonsson and Mostad (2016) <doi:10.1016/j.fsigen.2016.04.005>.
Maintained by Thore Egeland. Last updated 2 months ago.
52.2 match 8 stars 6.00 score 14 scripts 1 dependents
magnusdv
pedFamilias:Import and Export 'Familias' Files
Tools for exchanging pedigree data between the 'pedsuite' packages and the 'Familias' software for forensic kinship computations (Egeland et al. (2000) <doi:10.1016/s0379-0738(00)00147-x>). These functions were split out from the 'forrel' package to streamline maintenance and provide a lightweight alternative for packages otherwise independent of 'forrel'.
Maintained by Magnus Dehli Vigeland. Last updated 6 months ago.
familiaskinship-testingpedsuite
17.2 match 2 stars 4.56 score 5 scripts 6 dependents
kimjoaoun
owdbr:Open Welfare Data Brazil
Tools for collecting municipal-level data <http://www.transparencia.gov.br/swagger-ui.html> from several Brazilian governmental social programs.
Maintained by Joao Pedro Oliveira dos Santos. Last updated 6 years ago.
bolsa-familiabrasilbrazilgovernmentgovernment-datawelfare-data
9.2 match 14 stars 3.85 score 4 scriptsmagnusdv
forrel:Forensic Pedigree Analysis and Relatedness Inference
Forensic applications of pedigree analysis, including likelihood ratios for relationship testing, general relatedness inference, marker simulation, and power analysis. 'forrel' is part of the 'pedsuite', a collection of packages for pedigree analysis, further described in the book 'Pedigree Analysis in R' (Vigeland, 2021, ISBN:9780128244302). Several functions deal specifically with power analysis in missing person cases, implementing methods described in Vigeland et al. (2020) <doi:10.1016/j.fsigen.2020.102376>. Data import from the 'Familias' software (Egeland et al. (2000) <doi:10.1016/S0379-0738(00)00147-X>) is supported through the 'pedFamilias' package.
Maintained by Magnus Dehli Vigeland. Last updated 6 days ago.
2.5 match 11 stars 6.98 score 63 scripts 7 dependents
marsicofl
fbnet:Forensic Bayesian Networks
Open-source package for computing likelihood ratios in kinship testing and human identification cases (Chernomoretz et al. (2021) <doi:10.1016/j.fsir.2020.100132>). It has the core function of the software GENis, developed by Fundación Sadosky. It relies on a Bayesian Networks framework and is particularly well suited to efficiently perform large-size queries against databases of missing individuals (Darwiche (2009) <doi:10.1017/CBO9780511811357>).
Maintained by Franco Marsico. Last updated 1 years ago.
3.5 match 1 stars 3.18 score 4 scripts 1 dependents
mateusmaiads
randomMachines:An Ensemble Modeling using Random Machines
A novel ensemble method employing Support Vector Machines (SVMs) as base learners. This powerful ensemble model is designed for both classification (Ara A., et. al, 2021) <doi:10.6339/21-JDS1014>, and regression (Ara A., et. al, 2021) <doi:10.1016/j.eswa.2022.117107> problems, offering versatility and robust performance across different datasets and compared with other consolidated methods as Random Forests (Maia M, et. al, 2021) <doi:10.6339/21-JDS1025>.
Maintained by Mateus Maia. Last updated 12 months ago.
4.0 match 1 stars 2.74 score 11 scripts
carlosfamilia
appnn:Amyloid Propensity Prediction Neural Network
Amyloid propensity prediction neural network (APPNN) is an amyloidogenicity propensity predictor based on a machine learning approach through recursive feature selection and feed-forward neural networks, taking advantage of newly published sequences with experimental, in vitro, evidence of amyloid formation.
Maintained by Carlos Família. Last updated 3 months ago.
9.1 match 1.00 score 7 scriptsmagnusdv
dvir:Disaster Victim Identification
Joint DNA-based disaster victim identification (DVI), as described in Vigeland and Egeland (2021) <doi:10.21203/rs.3.rs-296414/v1>. Identification is performed by optimising the joint likelihood of all victim samples and reference individuals. Individual identification probabilities, conditional on all available information, are derived from the joint solution in the form of posterior pairing probabilities. 'dvir' is part of the 'pedsuite' collection of packages for pedigree analysis.
Maintained by Magnus Dehli Vigeland. Last updated 3 months ago.
1.8 match 3 stars 5.05 score 21 scripts 1 dependentsmagnusdv
KLINK:Kinship Analysis with Linked Markers
A 'shiny' application for forensic kinship testing, based on the 'pedsuite' R packages. 'KLINK' is closely aligned with the (non-R) software 'Familias' and 'FamLink', but offers several unique features, including visualisations and automated report generation. The calculation of likelihood ratios supports pairs of linked markers, and all common mutation models.
Maintained by Magnus Dehli Vigeland. Last updated 6 days ago.
forensic-geneticskinship-testingpedsuiteshiny
0.5 match 1 stars 3.88 score 5 scripts