Showing 13 of total 13 results (show query)
safetygraphics
safetyGraphics:Interactive Graphics for Monitoring Clinical Trial Safety
A framework for evaluation of clinical trial safety. Users can interactively explore their data using the included 'Shiny' application.
Maintained by Jeremy Wildfire. Last updated 2 years ago.
99 stars 8.19 score 111 scripts
tetratech
baytrends:Long Term Water Quality Trend Analysis
Enable users to evaluate long-term trends using a Generalized Additive Modeling (GAM) approach. The model development includes selecting a GAM structure to describe nonlinear seasonally-varying changes over time, incorporation of hydrologic variability via either a river flow or salinity, the use of an intervention to deal with method or laboratory changes suspected to impact data values, and representation of left- and interval-censored data. The approach has been applied to water quality data in the Chesapeake Bay, a major estuary on the east coast of the United States to provide insights to a range of management- and research-focused questions. Methodology described in Murphy (2019) <doi:10.1016/j.envsoft.2019.03.027>.
Maintained by Erik W Leppo. Last updated 5 months ago.
12 stars 6.67 score 97 scripts
phil8192
obAnalytics:Limit Order Book Analytics
Data processing, visualisation and analysis of Limit Order Book event data.
Maintained by Philip Stubbings. Last updated 6 years ago.
bitcoinlimit-order-booktradingvisualisation
152 stars 6.36 score 30 scripts
bbuchsbaum
neuroim:Data Structures and Handling for Neuroimaging Data
A collection of data structures that represent volumetric brain imaging data. The focus is on basic data handling for 3D and 4D neuroimaging data. In addition, there are function to read and write NIFTI files and limited support for reading AFNI files.
Maintained by Bradley Buchsbaum. Last updated 4 years ago.
6 stars 5.64 score 48 scripts
xufengduan
MacBehaviour:Behavioural Studies of Large Language Models
Efficient way to design and conduct psychological experiments for testing the performance of large language models. It simplifies the process of setting up experiments and data collection via language models’ API, facilitating a smooth workflow for researchers in the field of machine behaviour.
Maintained by Xufeng Duan. Last updated 3 months ago.
24 stars 5.58 score
bioc
diffHic:Differential Analysis of Hi-C Data
Detects differential interactions across biological conditions in a Hi-C experiment. Methods are provided for read alignment and data pre-processing into interaction counts. Statistical analysis is based on edgeR and supports normalization and filtering. Several visualization options are also available.
Maintained by Aaron Lun. Last updated 3 months ago.
multiplecomparisonpreprocessingsequencingcoveragealignmentnormalizationclusteringhiccurlbzip2xz-utilszlibcpp
5.58 score 38 scripts
tinnlab
RCPA:Consensus Pathway Analysis
Provides a set of functions to perform pathway analysis and meta-analysis from multiple gene expression datasets, as well as visualization of the results. This package wraps functionality from the following packages: Ritchie et al. (2015) <doi:10.1093/nar/gkv007>, Love et al. (2014) <doi:10.1186/s13059-014-0550-8>, Robinson et al. (2010) <doi:10.1093/bioinformatics/btp616>, Korotkevich et al. (2016) <arxiv:10.1101/060012>, Efron et al. (2015) <https://CRAN.R-project.org/package=GSA>, and Gu et al. (2012) <https://CRAN.R-project.org/package=CePa>.
Maintained by Ha Nguyen. Last updated 5 months ago.
biobasedeseq2geoqueryedgerlimmarcyjsfgseabrowservizsummarizedexperimentannotationdbirontotools
1 stars 5.50 score 70 scripts
ropensci
DoOR.data:Integrating Heterogeneous Odorant Response Data into a Common Response Model: A DoOR to the Complete Olfactome
This is a data package providing Drosophila odorant response data for DoOR.functions. See URLs for the original and the DoOR 2.0 publications.
Maintained by Daniel Münch. Last updated 3 years ago.
7 stars 4.45 score 135 scripts 1 dependents
choi-phd
PROsetta:Linking Patient-Reported Outcomes Measures
Perform scale linking to establish relationships between instruments that measure similar constructs according to the PROsetta Stone methodology, as in Choi, Schalet, Cook, & Cella (2014) <doi:10.1037/a0035768>.
Maintained by Seung W. Choi. Last updated 4 months ago.
1 stars 4.44 score 11 scripts
pandora-isomemo
Pandora:Retrieve Data using the API of the 'Pandora' Data Platform
API wrapper that contains functions to retrieve data from the 'Pandora' databases. Web services for API: <https://pandora.earth/>.
Maintained by Jan Abel. Last updated 2 months ago.
4.00 score 2 scripts
okgreece
TrafficBDE:Traffic Predictions Using Neural Networks
Estimate and return either the traffic speed or the car entries in the city of Thessaloniki using historical traffic data. It's used in transport pilot of the 'BigDataEurope' project. There are functions for processing these data, training a neural network, select the most appropriate model and predict the traffic speed or the car entries for a selected time date.
Maintained by Kleanthis Koupidis. Last updated 3 years ago.
big-data-europeneural-networksthessalonikitraffic-status-prediction
1 stars 3.98 score 19 scriptsbioc
SubCellBarCode:SubCellBarCode: Integrated workflow for robust mapping and visualizing whole human spatial proteome
Mass-Spectrometry based spatial proteomics have enabled the proteome-wide mapping of protein subcellular localization (Orre et al. 2019, Molecular Cell). SubCellBarCode R package robustly classifies proteins into corresponding subcellular localization.
Maintained by Taner Arslan. Last updated 5 months ago.
proteomicsmassspectrometryclassification
3.78 score 1 scripts
cran
ELISAtools:ELISA Data Analysis with Batch Correction
To run data analysis for enzyme-link immunosorbent assays (ELISAs). Either the five- or four-parameter logistic model will be fitted for data of single ELISA. Moreover, the batch effect correction/normalization will be carried out, when there are more than one batches of ELISAs. Feng (2018) <doi:10.1101/483800>.
Maintained by Feng Feng. Last updated 4 years ago.
1 stars 2.70 score