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bioc
Gviz:Plotting data and annotation information along genomic coordinates
Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.
Maintained by Robert Ivanek. Last updated 5 months ago.
visualizationmicroarraysequencing
79 stars 13.05 score 1.4k scripts 46 dependents
ropensci
geojson:Classes for 'GeoJSON'
Classes for 'GeoJSON' to make working with 'GeoJSON' easier. Includes S3 classes for 'GeoJSON' classes with brief summary output, and a few methods such as extracting and adding bounding boxes, properties, and coordinate reference systems; working with newline delimited 'GeoJSON'; and serializing to/from 'Geobuf' binary 'GeoJSON' format.
Maintained by Michael Sumner. Last updated 2 years ago.
geojsongeospatialconversiondatainput-outputbboxpolygongeobufcrsndgeojsonspatial
32 stars 10.56 score 166 scripts 14 dependentsbioc
AnnotationFilter:Facilities for Filtering Bioconductor Annotation Resources
This package provides class and other infrastructure to implement filters for manipulating Bioconductor annotation resources. The filters will be used by ensembldb, Organism.dplyr, and other packages.
Maintained by Bioconductor Package Maintainer. Last updated 5 months ago.
annotationinfrastructuresoftwarebioconductor-packagecore-package
5 stars 10.19 score 45 scripts 160 dependents
iqis
Q7:Types and Features for Object Oriented Programming
Construct message-passing style objects with types and features. Q7 types uses composition instead of inheritance in creating derived types, allowing definining any code segment as feature and associating any feature to any object. Compared to R6, Q7 is simpler, more flexible, and more friendly.
Maintained by Siqi Zhang. Last updated 3 years ago.
5 stars 5.10 score 10 scripts
rajarshi
fingerprint:Functions to Operate on Binary Fingerprint Data
Functions to manipulate binary fingerprints of arbitrary length. A fingerprint is represented by an object of S4 class 'fingerprint' which is internally represented a vector of integers, such that each element represents the position in the fingerprint that is set to 1. The bitwise logical functions in R are overridden so that they can be used directly with 'fingerprint' objects. A number of distance metrics are also available (many contributed by Michael Fadock). Fingerprints can be converted to Euclidean vectors (i.e., points on the unit hypersphere) and can also be folded using OR. Arbitrary fingerprint formats can be handled via line handlers. Currently handlers are provided for CDK, MOE and BCI fingerprint data.
Maintained by Rajarshi Guha. Last updated 7 years ago.
4.27 score 82 scripts 12 dependents