Showing 20 of total 20 results (show query)
tidyverse
ggplot2:Create Elegant Data Visualisations Using the Grammar of Graphics
A system for 'declaratively' creating graphics, based on "The Grammar of Graphics". You provide the data, tell 'ggplot2' how to map variables to aesthetics, what graphical primitives to use, and it takes care of the details.
Maintained by Thomas Lin Pedersen. Last updated 4 days ago.
data-visualisationvisualisation
6.6k stars 25.10 score 645k scripts 7.6k dependents
bioc
ggtree:an R package for visualization of tree and annotation data
'ggtree' extends the 'ggplot2' plotting system which implemented the grammar of graphics. 'ggtree' is designed for visualization and annotation of phylogenetic trees and other tree-like structures with their annotation data.
Maintained by Guangchuang Yu. Last updated 5 months ago.
alignmentannotationclusteringdataimportmultiplesequencealignmentphylogeneticsreproducibleresearchsoftwarevisualizationannotationsggplot2phylogenetic-trees
871 stars 16.83 score 5.1k scripts 109 dependents
dieghernan
tidyterra:'tidyverse' Methods and 'ggplot2' Helpers for 'terra' Objects
Extension of the 'tidyverse' for 'SpatRaster' and 'SpatVector' objects of the 'terra' package. It includes also new 'geom_' functions that provide a convenient way of visualizing 'terra' objects with 'ggplot2'.
Maintained by Diego Hernangómez. Last updated 4 days ago.
terraggplot-extensionr-spatialrspatial
190 stars 13.59 score 1.9k scripts 25 dependents
paleolimbot
ggspatial:Spatial Data Framework for ggplot2
Spatial data plus the power of the ggplot2 framework means easier mapping when input data are already in the form of spatial objects.
Maintained by Dewey Dunnington. Last updated 2 years ago.
379 stars 12.85 score 4.1k scripts 24 dependents
yutannihilation
gghighlight:Highlight Lines and Points in 'ggplot2'
Make it easier to explore data with highlights.
Maintained by Hiroaki Yutani. Last updated 7 months ago.
523 stars 11.64 score 1.6k scripts 4 dependents
nlmixr2
rxode2:Facilities for Simulating from ODE-Based Models
Facilities for running simulations from ordinary differential equation ('ODE') models, such as pharmacometrics and other compartmental models. A compilation manager translates the ODE model into C, compiles it, and dynamically loads the object code into R for improved computational efficiency. An event table object facilitates the specification of complex dosing regimens (optional) and sampling schedules. NB: The use of this package requires both C and Fortran compilers, for details on their use with R please see Section 6.3, Appendix A, and Appendix D in the "R Administration and Installation" manual. Also the code is mostly released under GPL. The 'VODE' and 'LSODA' are in the public domain. The information is available in the inst/COPYRIGHTS.
Maintained by Matthew L. Fidler. Last updated 1 months ago.
40 stars 11.24 score 220 scripts 13 dependents
dreamrs
billboarder:Create Interactive Chart with the JavaScript 'Billboard' Library
Provides an 'htmlwidgets' interface to 'billboard.js', a re-usable easy interface JavaScript chart library, based on D3 v4+. Chart types include line charts, scatterplots, bar/lollipop charts, histogram/density plots, pie/donut charts and gauge charts. All charts are interactive, and a proxy method is implemented to smoothly update a chart without rendering it again in 'shiny' apps.
Maintained by Victor Perrier. Last updated 9 days ago.
175 stars 9.70 score 96 scripts 4 dependents
animint
animint2:Animated Interactive Grammar of Graphics
Functions are provided for defining animated, interactive data visualizations in R code, and rendering on a web page. The 2018 Journal of Computational and Graphical Statistics paper, <doi:10.1080/10618600.2018.1513367> describes the concepts implemented.
Maintained by Toby Hocking. Last updated 1 months ago.
64 stars 8.84 score 173 scriptsdreamrs
apexcharter:Create Interactive Chart with the JavaScript 'ApexCharts' Library
Provides an 'htmlwidgets' interface to 'apexcharts.js'. 'Apexcharts' is a modern JavaScript charting library to build interactive charts and visualizations with simple API. 'Apexcharts' examples and documentation are available here: <https://apexcharts.com/>.
Maintained by Victor Perrier. Last updated 1 months ago.
144 stars 8.43 score 247 scriptsbioc
ggsc:Visualizing Single Cell and Spatial Transcriptomics
Useful functions to visualize single cell and spatial data. It supports visualizing 'Seurat', 'SingleCellExperiment' and 'SpatialExperiment' objects through grammar of graphics syntax implemented in 'ggplot2'.
Maintained by Guangchuang Yu. Last updated 5 months ago.
dimensionreductiongeneexpressionsinglecellsoftwarespatialtranscriptomicsvisualizationopenblascppopenmp
47 stars 7.59 score 18 scripts
guangchuangyu
meme:Create Meme
The word 'Meme' was originated from the book, 'The Selfish Gene', authored by Richard Dawkins (1976). It is a unit of culture that is passed from one generation to another and correlates to the gene, the unit of physical heredity. The internet memes are captioned photos that are intended to be funny, ridiculous. Memes behave like infectious viruses and travel from person to person quickly through social media. The 'meme' package allows users to make custom memes.
Maintained by Guangchuang Yu. Last updated 4 years ago.
45 stars 7.08 score 54 scriptsdreamrs
vchartr:Interactive Charts with the 'JavaScript' 'VChart' Library
Provides an 'htmlwidgets' interface to 'VChart.js'. 'VChart', more than just a cross-platform charting library, but also an expressive data storyteller. 'VChart' examples and documentation are available here: <https://www.visactor.io/vchart>.
Maintained by Victor Perrier. Last updated 2 months ago.
9 stars 6.89 score 96 scriptsguangchuangyu
ggtangle:Draw Network with Data
Extends the 'ggplot2' plotting system to support network visualization. Inspired by the 'Method 1' in 'ggtree' (G Yu (2018) <doi:10.1093/molbev/msy194>), 'ggtangle' is designed to work with network associated data.
Maintained by Guangchuang Yu. Last updated 3 months ago.
1 stars 6.87 score 3 scripts 59 dependents
ddsjoberg
dcurves:Decision Curve Analysis for Model Evaluation
Diagnostic and prognostic models are typically evaluated with measures of accuracy that do not address clinical consequences. Decision-analytic techniques allow assessment of clinical outcomes, but often require collection of additional information may be cumbersome to apply to models that yield a continuous result. Decision curve analysis is a method for evaluating and comparing prediction models that incorporates clinical consequences, requires only the data set on which the models are tested, and can be applied to models that have either continuous or dichotomous results. See the following references for details on the methods: Vickers (2006) <doi:10.1177/0272989X06295361>, Vickers (2008) <doi:10.1186/1472-6947-8-53>, and Pfeiffer (2020) <doi:10.1002/bimj.201800240>.
Maintained by Daniel D. Sjoberg. Last updated 8 months ago.
40 stars 6.77 score 95 scripts
yulab-smu
tidydr:Unify Dimensionality Reduction Results
Dimensionality reduction (DR) is widely used in many domain for analyzing and visualizing high-dimensional data. 'tidydr' provides uniform output and is compatible with multiple methods, including 'prcomp', 'mds', 'Rtsne'. etc.
Maintained by Guangchuang Yu. Last updated 1 years ago.
14 stars 6.47 score 71 scripts 1 dependents
stocnet
manynet:Many Ways to Make, Modify, Map, Mark, and Measure Myriad Networks
Many tools for making, modifying, mapping, marking, measuring, and motifs and memberships of many different types of networks. All functions operate with matrices, edge lists, and 'igraph', 'network', and 'tidygraph' objects, and on one-mode, two-mode (bipartite), and sometimes three-mode networks. The package includes functions for importing and exporting, creating and generating networks, modifying networks and node and tie attributes, and describing and visualizing networks with sensible defaults.
Maintained by James Hollway. Last updated 3 months ago.
diffusion-modelsgraphsnetwork-analysis
13 stars 6.41 score 35 scripts 1 dependentsstocnet
migraph:Univariate and Multivariate Tests for Multimodal and Other Networks
A set of tools for testing networks. It includes functions for univariate and multivariate conditional uniform graph and quadratic assignment procedure testing, and network regression. The package is a complement to 'Multimodal Political Networks' (2021, ISBN:9781108985000), and includes various datasets used in the book. Built on the 'manynet' package, all functions operate with matrices, edge lists, and 'igraph', 'network', and 'tidygraph' objects, and on one-mode and two-mode (bipartite) networks.
Maintained by James Hollway. Last updated 4 months ago.
igraphmultilevel-networksmultimodal-networknetwork-analysissna
41 stars 6.37 score 33 scripts
cran
ggtern:An Extension to 'ggplot2', for the Creation of Ternary Diagrams
Extends the functionality of 'ggplot2', providing the capability to plot ternary diagrams for (subset of) the 'ggplot2' geometries. Additionally, 'ggtern' has implemented several NEW geometries which are unavailable to the standard 'ggplot2' release. For further examples and documentation, please proceed to the 'ggtern' website.
Maintained by Nicholas Hamilton. Last updated 1 years ago.
4 stars 5.09 score 6 dependents
elipousson
maplayer:Make Map Layers With ggplot2
Make map-making with ggplot2 and sf more convenient with layers that subset by location.
Maintained by Eli Pousson. Last updated 7 months ago.
9 stars 3.26 score 7 scripts
tanho63
mobileCharts:Mobile Charts
Create charts optimized for mobile.
Maintained by John Coene. Last updated 5 years ago.
1.70 score 5 scripts